mRNA_P-wetherbeei_contig6428.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6428.4.1
Unique NamemRNA_P-wetherbeei_contig6428.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig6428.4.1 vs. uniprot
Match: A0A7S2RGQ9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RGQ9_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 9.660e-10
Identity = 39/73 (53.42%), Postives = 51/73 (69.86%), Query Frame = 1 
Query:    4 RRQSSYSSVVNQGLDEEELAFKRTLEMQGDDIDDMFSFADHG--ELEFDNQELGQIQMLEEYRERLMQ-SSGA 213
            R++    ++V+ GLD+EE AFKR LE Q D+IDD+F+F   G  E+EFD  EL QI+MLE YR  L+  SSGA
Sbjct:   81 RKKDYRYTMVHHGLDDEEQAFKRNLETQTDEIDDLFNFTADGDQEIEFDASELEQIEMLENYRSNLVAASSGA 153
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BLAST of mRNA_P-wetherbeei_contig6428.4.1 vs. uniprot
Match: D8LB60_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB60_ECTSI)

HSP 1 Score: 60.5 bits (145), Expect = 6.820e-9
Identity = 31/60 (51.67%), Postives = 42/60 (70.00%), Query Frame = 1 
Query:   25 SVVNQGLDEEELAFKRTLEMQ---GDDIDDMFSFADHGELEFDNQELGQIQMLEEYRERL 195
            + VN  LDEEE+AFK +LE Q   GDDID++F+F+   ELEFD  +L  ++ML+ YR  L
Sbjct:   44 TAVNHSLDEEEIAFKNSLEAQNEGGDDIDELFNFSGQDELEFDTNDLDNLEMLQMYRSNL 103
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BLAST of mRNA_P-wetherbeei_contig6428.4.1 vs. uniprot
Match: A0A6H5K9N2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9N2_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 4.260e-8
Identity = 43/108 (39.81%), Postives = 57/108 (52.78%), Query Frame = 1 
Query:   25 SVVNQGLDEEELAFKRTLEMQ---GDDIDDMFSFADHGELEFDNQELGQIQMLEEYRERLMQ-------SSGAGPDSAAKVHRRSAEANSVSGANAEDAAETHRLEAL 318
            + VN  LDEEE AFK +LE Q   GDDID++F+F+   ELEFD  +L  ++M++ YR  L          +G G D AA ++    E     GA      E   LEAL
Sbjct:   44 TAVNHSLDEEETAFKNSLEAQNEGGDDIDELFNFSGQDELEFDTNDLDNLEMMQMYRSNLGVPANPRGVETGLGKDGAAAINGSGRE-----GAGRNTVQEAEDLEAL 146
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BLAST of mRNA_P-wetherbeei_contig6428.4.1 vs. uniprot
Match: A0A7S2V8A7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V8A7_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 2.270e-7
Identity = 31/69 (44.93%), Postives = 49/69 (71.01%), Query Frame = 1 
Query:    4 RRQSSYSSVVNQGLDEEELAFKRTLEMQGDD-IDDMFSFADHGELEFDNQELGQIQMLEEYRERLMQSS 207
            R Q  Y++V ++ LD++EL FK+TLEM+GDD ID +F F    ++EFD ++L  ++ LE YR+ L+ S+
Sbjct:   37 RSQVPYNAVAHE-LDDDELLFKKTLEMKGDDVIDKLFDFDGQDDMEFDAKDLDNLESLESYRKNLVASA 104
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BLAST of mRNA_P-wetherbeei_contig6428.4.1 vs. uniprot
Match: A0A7S2G3L3_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G3L3_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 2.880e-6
Identity = 31/61 (50.82%), Postives = 42/61 (68.85%), Query Frame = 1 
Query:   31 VNQGLDEEELAFKRTLEMQGDDIDDMFSFADHG--ELEFDNQELGQIQMLEEYRERLMQSS 207
            V+ GLD+EE  FK+ L+ Q D+IDD+F+F +    EL FD  EL QI+MLE YR  L+ +S
Sbjct:  133 VHHGLDDEEQEFKKILDSQTDEIDDLFNFNEENDEELAFDASELEQIEMLENYRNNLVAAS 193
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6428.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A7S2RGQ9_9STRA9.660e-1053.42Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
D8LB60_ECTSI6.820e-951.67Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K9N2_9PHAE4.260e-839.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2V8A7_9STRA2.270e-744.93Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2G3L3_9STRA2.880e-650.82Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6428contigP-wetherbeei_contig6428:1687..2532 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size464
Hectar predicted targeting categoryother localisation
Exons2
Cds size357
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186912.6491327-UTR-P-wetherbeei_contig6428:1686..17121683186912.6491327-UTR-P-wetherbeei_contig6428:1686..1712Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6428 1687..1712 -
1683186912.6737235-UTR-P-wetherbeei_contig6428:2451..25321683186912.6737235-UTR-P-wetherbeei_contig6428:2451..2532Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6428 2452..2532 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186912.6577508-CDS-P-wetherbeei_contig6428:1712..20631683186912.6577508-CDS-P-wetherbeei_contig6428:1712..2063Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6428 1713..2063 -
1683186912.6657417-CDS-P-wetherbeei_contig6428:2445..24511683186912.6657417-CDS-P-wetherbeei_contig6428:2445..2451Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6428 2446..2451 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6428.4.1prot_P-wetherbeei_contig6428.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6428 1713..2451 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6428.4.1

>prot_P-wetherbeei_contig6428.4.1 ID=prot_P-wetherbeei_contig6428.4.1|Name=mRNA_P-wetherbeei_contig6428.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=119bp
MQGDDIDDMFSFADHGELEFDNQELGQIQMLEEYRERLMQSSGAGPDSAA
KVHRRSAEANSVSGANAEDAAETHRLEALEAEPQAATGRGGGSGSSGGGS
GGGAGSGGGGGGIGKNGA*
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mRNA from alignment at P-wetherbeei_contig6428:1687..2532-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6428.4.1 ID=mRNA_P-wetherbeei_contig6428.4.1|Name=mRNA_P-wetherbeei_contig6428.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=846bp|location=Sequence derived from alignment at P-wetherbeei_contig6428:1687..2532- (Phaeothamnion wetherbeei SAG_119_79)
CAACGGCGGCAGAGCTCGTACTCTTCTGTCGTAAACCAAGGATTAGATGA
GGAAGAGCTGGCGTTTAAACGCACGCTTGAGATGCAGGTGCGTGTAATTG
CACTTTCCGCAGGCAACTTTTCCTGTTAGCTTTTTCTTCGCAACAGAAAA
ACCCGGCAGTTTGTTGAGAGAAAGCGTGCCTGCAACCCCACACATTGCCA
TGCTTTGTGCCGTATGCCACGGGTAACGAAATCTTGCAGCGAGGAGTTCA
CTGGAGGAAGAACGGTCCTGACTAAAAGAGGGGTTTGGCTTGATTTGACA
AGCGAAGTATTCCATTCGCTCTAATGACTGCTGTGCAGACCTTTCGAAGC
GCTCGTTGCCTGTGCAAGGGCCTTGATATCGTTAACTACCTGGGTTTTCA
CGGGAATTTCCAGCAGTCACGCTCACTTCAAATAAAATGCCTTCCCAATT
GCTGCACTGTCTGCGGCAGGGCGACGACATTGACGATATGTTCTCCTTTG
CGGATCATGGCGAGCTCGAATTCGACAACCAGGAGCTGGGCCAAATCCAG
ATGCTTGAGGAGTATAGGGAGAGGTTGATGCAGTCCAGCGGAGCAGGCCC
GGACTCTGCGGCGAAGGTGCATCGGCGCAGTGCTGAAGCCAACAGCGTCA
GCGGCGCAAATGCCGAAGACGCCGCGGAGACGCATAGGTTAGAAGCGCTC
GAGGCCGAGCCCCAAGCTGCGACAGGAAGAGGAGGCGGCAGCGGCAGCAG
CGGCGGTGGCAGTGGCGGCGGCGCCGGCAGTGGTGGAGGCGGAGGCGGCA
TTGGGAAAAACGGAGCATAAACGGTGACGATTCCTCCAATCCGAAT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6428:1687..2532-

>mRNA_P-wetherbeei_contig6428.4.1 ID=mRNA_P-wetherbeei_contig6428.4.1|Name=mRNA_P-wetherbeei_contig6428.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=357bp|location=Sequence derived from alignment at P-wetherbeei_contig6428:1687..2532- (Phaeothamnion wetherbeei SAG_119_79)
ATGCAGGGCGACGACATTGACGATATGTTCTCCTTTGCGGATCATGGCGA
GCTCGAATTCGACAACCAGGAGCTGGGCCAAATCCAGATGCTTGAGGAGT
ATAGGGAGAGGTTGATGCAGTCCAGCGGAGCAGGCCCGGACTCTGCGGCG
AAGGTGCATCGGCGCAGTGCTGAAGCCAACAGCGTCAGCGGCGCAAATGC
CGAAGACGCCGCGGAGACGCATAGGTTAGAAGCGCTCGAGGCCGAGCCCC
AAGCTGCGACAGGAAGAGGAGGCGGCAGCGGCAGCAGCGGCGGTGGCAGT
GGCGGCGGCGCCGGCAGTGGTGGAGGCGGAGGCGGCATTGGGAAAAACGG
AGCATAA
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