mRNA_P-wetherbeei_contig6421.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6421.1.1
Unique NamemRNA_P-wetherbeei_contig6421.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6421.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6421contigP-wetherbeei_contig6421:3242..3409 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog35128.Thaps21152
PFAMszf-RING_2
Model size168
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue1.42e-05
EggNOG OGsKOG0800@1|root,KOG0800@2759|Eukaryota,2XFFQ@2836|Bacillariophyta
Ec32 ortholog descriptionZinc finger, RING/FYVE/PHD-type
Ec32 orthologEc-08_001660.1
DescriptionRING-type zinc-finger
Cds size168
COG categoryO
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186912.4010813-CDS-P-wetherbeei_contig6421:3241..34091683186912.4010813-CDS-P-wetherbeei_contig6421:3241..3409Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6421 3242..3409 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6421.1.1prot_P-wetherbeei_contig6421.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6421 3242..3409 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6421.1.1

>prot_P-wetherbeei_contig6421.1.1 ID=prot_P-wetherbeei_contig6421.1.1|Name=mRNA_P-wetherbeei_contig6421.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=56bp
GVGGGGAETASAGVEGAVRLEDLEPMCSICLSEYVEGEACTLLPCTHIFH
AEVRV*
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mRNA from alignment at P-wetherbeei_contig6421:3242..3409+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6421.1.1 ID=mRNA_P-wetherbeei_contig6421.1.1|Name=mRNA_P-wetherbeei_contig6421.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=168bp|location=Sequence derived from alignment at P-wetherbeei_contig6421:3242..3409+ (Phaeothamnion wetherbeei SAG_119_79)
GGCGTCGGCGGTGGCGGAGCGGAAACGGCGTCGGCGGGCGTGGAAGGCGC
GGTGCGGCTGGAAGACTTGGAGCCAATGTGCTCCATCTGCCTCTCTGAGT
ACGTTGAGGGAGAGGCATGTACGCTGCTCCCGTGCACGCACATATTCCAC
GCGGAGGTGAGAGTGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6421:3242..3409+

>mRNA_P-wetherbeei_contig6421.1.1 ID=mRNA_P-wetherbeei_contig6421.1.1|Name=mRNA_P-wetherbeei_contig6421.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=168bp|location=Sequence derived from alignment at P-wetherbeei_contig6421:3242..3409+ (Phaeothamnion wetherbeei SAG_119_79)
GGCGTCGGCGGTGGCGGAGCGGAAACGGCGTCGGCGGGCGTGGAAGGCGC
GGTGCGGCTGGAAGACTTGGAGCCAATGTGCTCCATCTGCCTCTCTGAGT
ACGTTGAGGGAGAGGCATGTACGCTGCTCCCGTGCACGCACATATTCCAC
GCGGAGGTGAGAGTGTGA
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