mRNA_P-wetherbeei_contig6416.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6416.2.1
Unique NamemRNA_P-wetherbeei_contig6416.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig6416.2.1 vs. uniprot
Match: A0A7S1UG10_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UG10_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 6.140e-21
Identity = 74/88 (84.09%), Postives = 78/88 (88.64%), Query Frame = 1 
Query:    1 EQRRQALRQQQQRLLLLRHASKCP-QSDSGQ-CSVTPHCAGMKKLWKHIAECKDQHCAIXXXXXXXXXXXXXXXXXXXXXXVCAPVRE 258
            EQ +  LRQQQQRLLLLRHASKCP  S+SGQ C+VTPHCA MKKLWKHIAECKDQ C +XXXXXXXXXXXXXXXXXXXXX VCAPVRE
Sbjct:  388 EQHKALLRQQQQRLLLLRHASKCPFDSESGQQCTVTPHCASMKKLWKHIAECKDQRCQVXXXXXXXXXXXXXXXXXXXXXSVCAPVRE 475
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BLAST of mRNA_P-wetherbeei_contig6416.2.1 vs. uniprot
Match: A0A7S4WAS7_9STRA (Histone acetyltransferase (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4WAS7_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 2.270e-20
Identity = 69/84 (82.14%), Postives = 74/84 (88.10%), Query Frame = 1 
Query:    7 RRQALRQQQQRLLLLRHASKCPQSDSGQCSVTPHCAGMKKLWKHIAECKDQHCAIXXXXXXXXXXXXXXXXXXXXXXVCAPVRE 258
            R+Q LR QQQRLLLLRHA+KCP  D G+C VTPHCAGMK+LWKHIAECKDQ C +XXXXXXXXXXXXXXXXXXXXX VC PVRE
Sbjct:  261 RQQVLRHQQQRLLLLRHAAKCPHED-GRCPVTPHCAGMKRLWKHIAECKDQKCLVXXXXXXXXXXXXXXXXXXXXXPVCGPVRE 343
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BLAST of mRNA_P-wetherbeei_contig6416.2.1 vs. uniprot
Match: A0A7S2UKV4_9STRA (Histone acetyltransferase (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UKV4_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 2.510e-20
Identity = 69/84 (82.14%), Postives = 74/84 (88.10%), Query Frame = 1 
Query:    7 RRQALRQQQQRLLLLRHASKCPQSDSGQCSVTPHCAGMKKLWKHIAECKDQHCAIXXXXXXXXXXXXXXXXXXXXXXVCAPVRE 258
            R+Q LR QQQRLLLLRHA+KCP  D G+C VTPHCAGMK+LWKHIAECKDQ C +XXXXXXXXXXXXXXXXXXXXX VC PVRE
Sbjct:  387 RQQVLRHQQQRLLLLRHAAKCPHED-GRCPVTPHCAGMKRLWKHIAECKDQKCLVXXXXXXXXXXXXXXXXXXXXXPVCGPVRE 469
[Close]
BLAST of mRNA_P-wetherbeei_contig6416.2.1 vs. uniprot
Match: A0A7S2R3Z8_9STRA (Histone acetyltransferase n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R3Z8_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 2.550e-20
Identity = 69/84 (82.14%), Postives = 74/84 (88.10%), Query Frame = 1 
Query:    7 RRQALRQQQQRLLLLRHASKCPQSDSGQCSVTPHCAGMKKLWKHIAECKDQHCAIXXXXXXXXXXXXXXXXXXXXXXVCAPVRE 258
            R+Q LR QQQRLLLLRHA+KCP  D G+C VTPHCAGMK+LWKHIAECKDQ C +XXXXXXXXXXXXXXXXXXXXX VC PVRE
Sbjct:   48 RQQVLRHQQQRLLLLRHAAKCPHED-GRCPVTPHCAGMKRLWKHIAECKDQKCLVXXXXXXXXXXXXXXXXXXXXXPVCGPVRE 130
[Close]
BLAST of mRNA_P-wetherbeei_contig6416.2.1 vs. uniprot
Match: A0A7S2UIC4_9STRA (Histone acetyltransferase n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UIC4_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 2.560e-20
Identity = 69/84 (82.14%), Postives = 74/84 (88.10%), Query Frame = 1 
Query:    7 RRQALRQQQQRLLLLRHASKCPQSDSGQCSVTPHCAGMKKLWKHIAECKDQHCAIXXXXXXXXXXXXXXXXXXXXXXVCAPVRE 258
            R+Q LR QQQRLLLLRHA+KCP  D G+C VTPHCAGMK+LWKHIAECKDQ C +XXXXXXXXXXXXXXXXXXXXX VC PVRE
Sbjct:  387 RQQVLRHQQQRLLLLRHAAKCPHED-GRCPVTPHCAGMKRLWKHIAECKDQKCLVXXXXXXXXXXXXXXXXXXXXXPVCGPVRE 469
[Close]
BLAST of mRNA_P-wetherbeei_contig6416.2.1 vs. uniprot
Match: A0A6U3SN67_9STRA (Histone acetyltransferase (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A6U3SN67_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 3.460e-20
Identity = 69/84 (82.14%), Postives = 74/84 (88.10%), Query Frame = 1 
Query:    7 RRQALRQQQQRLLLLRHASKCPQSDSGQCSVTPHCAGMKKLWKHIAECKDQHCAIXXXXXXXXXXXXXXXXXXXXXXVCAPVRE 258
            R+Q LR QQQRLLLLRHA+KCP  D+ QC VTPHCAGMK+LWKHIAECKDQ C +XXXXXXXXXXXXXXXXXXXXX VC PVRE
Sbjct:   64 RQQVLRHQQQRLLLLRHAAKCPHQDN-QCPVTPHCAGMKRLWKHIAECKDQKCMVXXXXXXXXXXXXXXXXXXXXXPVCGPVRE 146
[Close]
BLAST of mRNA_P-wetherbeei_contig6416.2.1 vs. uniprot
Match: A0A448Z166_9STRA (Histone acetyltransferase n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z166_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 6.520e-20
Identity = 69/84 (82.14%), Postives = 74/84 (88.10%), Query Frame = 1 
Query:    7 RRQALRQQQQRLLLLRHASKCPQSDSGQCSVTPHCAGMKKLWKHIAECKDQHCAIXXXXXXXXXXXXXXXXXXXXXXVCAPVRE 258
            R+Q LR QQQRLLLLRHA+KC Q D G+C VTPHCAGMK+LWKHIAECKDQ C +XXXXXXXXXXXXXXXXXXXXX VC PVRE
Sbjct:  352 RQQVLRHQQQRLLLLRHAAKC-QHDDGRCPVTPHCAGMKRLWKHIAECKDQKCLVXXXXXXXXXXXXXXXXXXXXXPVCGPVRE 434
[Close]
BLAST of mRNA_P-wetherbeei_contig6416.2.1 vs. uniprot
Match: A0A7S2VVC1_9STRA (Histone acetyltransferase (Fragment) n=1 Tax=Triparma pacifica TaxID=91992 RepID=A0A7S2VVC1_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 8.790e-20
Identity = 68/84 (80.95%), Postives = 75/84 (89.29%), Query Frame = 1 
Query:    7 RRQALRQQQQRLLLLRHASKCPQSDSGQCSVTPHCAGMKKLWKHIAECKDQHCAIXXXXXXXXXXXXXXXXXXXXXXVCAPVRE 258
            R+Q LR QQQRLLLLRHA+KCP  ++G+C VTPHCAGMK+LWKHIAECKDQ C +XXXXXXXXXXXXXXXXXXXXX VC PVRE
Sbjct:  191 RQQVLRHQQQRLLLLRHAAKCPH-ENGKCPVTPHCAGMKRLWKHIAECKDQKCQVXXXXXXXXXXXXXXXXXXXXXPVCMPVRE 273
[Close]
BLAST of mRNA_P-wetherbeei_contig6416.2.1 vs. uniprot
Match: B8LBX0_THAPS (Histone acetyltransferase (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8LBX0_THAPS)

HSP 1 Score: 84.3 bits (207), Expect = 1.110e-19
Identity = 63/75 (84.00%), Postives = 66/75 (88.00%), Query Frame = 1 
Query:   31 QQRLLLLRHASKCPQSDSGQCSVTPHCAGMKKLWKHIAECKDQHCAIXXXXXXXXXXXXXXXXXXXXXXVCAPVR 255
            QQRLLLLRHA+KCP  D+ QC VTPHCAGMK+LWKHIAECKDQ C  XXXXXXXXXXXXXXXXXXXXX VC PVR
Sbjct:    1 QQRLLLLRHAAKCPHQDN-QCPVTPHCAGMKRLWKHIAECKDQKCVXXXXXXXXXXXXXXXXXXXXXXPVCGPVR 74
[Close]
BLAST of mRNA_P-wetherbeei_contig6416.2.1 vs. uniprot
Match: A0A7S4AKT6_9STRA (Histone acetyltransferase n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AKT6_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 1.660e-19
Identity = 69/84 (82.14%), Postives = 73/84 (86.90%), Query Frame = 1 
Query:    7 RRQALRQQQQRLLLLRHASKCPQSDSGQCSVTPHCAGMKKLWKHIAECKDQHCAIXXXXXXXXXXXXXXXXXXXXXXVCAPVRE 258
            R+Q LR QQQRLLLLRHA+KC Q D G C VTPHCAGMK+LWKHIAECKDQ C +XXXXXXXXXXXXXXXXXXXXX VC PVRE
Sbjct:  144 RQQVLRHQQQRLLLLRHAAKC-QHDDGLCPVTPHCAGMKRLWKHIAECKDQKCLVXXXXXXXXXXXXXXXXXXXXXPVCGPVRE 226
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6416.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S1UG10_9STRA6.140e-2184.09Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S4WAS7_9STRA2.270e-2082.14Histone acetyltransferase (Fragment) n=1 Tax=Dityl... [more]
A0A7S2UKV4_9STRA2.510e-2082.14Histone acetyltransferase (Fragment) n=1 Tax=Atthe... [more]
A0A7S2R3Z8_9STRA2.550e-2082.14Histone acetyltransferase n=1 Tax=Eucampia antarct... [more]
A0A7S2UIC4_9STRA2.560e-2082.14Histone acetyltransferase n=1 Tax=Attheya septentr... [more]
A0A6U3SN67_9STRA3.460e-2082.14Histone acetyltransferase (Fragment) n=1 Tax=Skele... [more]
A0A448Z166_9STRA6.520e-2082.14Histone acetyltransferase n=1 Tax=Pseudo-nitzschia... [more]
A0A7S2VVC1_9STRA8.790e-2080.95Histone acetyltransferase (Fragment) n=1 Tax=Tripa... [more]
B8LBX0_THAPS1.110e-1984.00Histone acetyltransferase (Fragment) n=1 Tax=Thala... [more]
A0A7S4AKT6_9STRA1.660e-1982.14Histone acetyltransferase n=1 Tax=Pseudo-nitzschia... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6416contigP-wetherbeei_contig6416:2882..3148 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2850.Phatr45764
PFAMsKIX_2,zf-TAZ
Model size267
Max annot lvl2836|Bacillariophyta
KEGG koko:K04498
KEGG Pathwayko04024,ko04066,ko04068,ko04110,ko04310,ko04330,ko04350,ko04520,ko04630,ko04720,ko04916,ko04919,ko04922,ko05016,ko05152,ko05161,ko05164,ko05165,ko05166,ko05167,ko05168,ko05169,ko05200,ko05203,ko05206,ko05211,ko05215,map04024,map04066,map04068,map04110,map04310,map04330,map04350,map04520,map04630,map04720,map04916,map04919,map04922,map05016,map05152,map05161,map05164,map05165,map05166,map05167,map05168,map05169,map05200,map05203,map05206,map05211,map05215
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.71e-20
EggNOG OGsCOG5076@1|root,KOG1474@2759|Eukaryota,KOG1778@2759|Eukaryota,2XENY@2836|Bacillariophyta
EC2.3.1.48
DescriptionTAZ zinc finger, present in p300 and CBP
Cds size267
COG categoryK
BRITEko00000,ko00001,ko01000,ko03000,ko03029,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186912.122622-CDS-P-wetherbeei_contig6416:2881..31481683186912.122622-CDS-P-wetherbeei_contig6416:2881..3148Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6416 2882..3148 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6416.2.1prot_P-wetherbeei_contig6416.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6416 2882..3148 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6416.2.1

>prot_P-wetherbeei_contig6416.2.1 ID=prot_P-wetherbeei_contig6416.2.1|Name=mRNA_P-wetherbeei_contig6416.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=89bp
EQRRQALRQQQQRLLLLRHASKCPQSDSGQCSVTPHCAGMKKLWKHIAEC
KDQHCAIPHCVSSRFVLSHYHRCKDTKCAVCAPVREVR*
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mRNA from alignment at P-wetherbeei_contig6416:2882..3148-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6416.2.1 ID=mRNA_P-wetherbeei_contig6416.2.1|Name=mRNA_P-wetherbeei_contig6416.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=267bp|location=Sequence derived from alignment at P-wetherbeei_contig6416:2882..3148- (Phaeothamnion wetherbeei SAG_119_79)
GAGCAGCGGCGGCAGGCGCTGCGCCAGCAGCAGCAGCGGCTCCTATTACT
GCGGCACGCGAGCAAGTGCCCGCAAAGCGATTCGGGGCAATGCTCGGTGA
CACCGCACTGTGCGGGGATGAAGAAGCTGTGGAAGCACATCGCCGAATGC
AAGGACCAGCACTGCGCGATCCCGCACTGCGTCTCGAGCCGGTTTGTGCT
GAGTCACTACCACCGCTGCAAGGACACTAAGTGCGCCGTCTGCGCGCCGG
TCCGCGAGGTAAGATGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6416:2882..3148-

>mRNA_P-wetherbeei_contig6416.2.1 ID=mRNA_P-wetherbeei_contig6416.2.1|Name=mRNA_P-wetherbeei_contig6416.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=267bp|location=Sequence derived from alignment at P-wetherbeei_contig6416:2882..3148- (Phaeothamnion wetherbeei SAG_119_79)
GAGCAGCGGCGGCAGGCGCTGCGCCAGCAGCAGCAGCGGCTCCTATTACT
GCGGCACGCGAGCAAGTGCCCGCAAAGCGATTCGGGGCAATGCTCGGTGA
CACCGCACTGTGCGGGGATGAAGAAGCTGTGGAAGCACATCGCCGAATGC
AAGGACCAGCACTGCGCGATCCCGCACTGCGTCTCGAGCCGGTTTGTGCT
GAGTCACTACCACCGCTGCAAGGACACTAAGTGCGCCGTCTGCGCGCCGG
TCCGCGAGGTAAGATGA
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