mRNA_P-wetherbeei_contig6414.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6414.2.1
Unique NamemRNA_P-wetherbeei_contig6414.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig6414.2.1 vs. uniprot
Match: D7FV69_ECTSI (DPH-type MB domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FV69_ECTSI)

HSP 1 Score: 114 bits (286), Expect = 7.830e-30
Identity = 54/85 (63.53%), Postives = 66/85 (77.65%), Query Frame = 1 
Query:   34 VYEEVQLREMDWDEDAQMYFYTCPCGDKFEISLEDLYDGEDIAPCPSCTLRLRVLFDEADLPPLRKEHKLMEL----DPGLQPVV 276
            VYEEV L EM +++  QMY+Y CPCGDKFEISLEDLYDGEDIAPCPSCTL+++VLF+E++LP LR E +  E       G +PVV
Sbjct:    5 VYEEVALEEMVYNDSEQMYYYECPCGDKFEISLEDLYDGEDIAPCPSCTLQIKVLFEESELPELRPEEEKEEEHGHDSRGGEPVV 89
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BLAST of mRNA_P-wetherbeei_contig6414.2.1 vs. uniprot
Match: A0A835Z4X0_9STRA (Diphthamide biosynthesis protein 3 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4X0_9STRA)

HSP 1 Score: 108 bits (269), Expect = 2.030e-27
Identity = 53/82 (64.63%), Postives = 60/82 (73.17%), Query Frame = 1 
Query:   34 VYEEVQLREMDWDEDAQMYFYTCPCGDKFEISLEDLYDGEDIAPCPSCTLRLRVLFDEADLPPLRKEHKLMELDPGLQPVVA 279
            VYEEV L +M +D   QMY Y+CPCGD FEISLEDL DGEDIAPCPSCTLR+RVL+D   LPPL++     E D GL P  A
Sbjct:    6 VYEEVALADMTFDAAEQMYTYSCPCGDLFEISLEDLLDGEDIAPCPSCTLRIRVLYDMESLPPLQQP----EGDGGLSPSTA 83
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BLAST of mRNA_P-wetherbeei_contig6414.2.1 vs. uniprot
Match: A0A7S2W7Y0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W7Y0_9STRA)

HSP 1 Score: 104 bits (260), Expect = 8.680e-26
Identity = 50/84 (59.52%), Postives = 61/84 (72.62%), Query Frame = 1 
Query:   34 VYEEVQLREMDWDEDAQMYFYTCPCGDKFEISLEDLYDGEDIAPCPSCTLRLRVLFDEADLP--PLRKEHKLMELDPGLQPVVA 279
            VYEEVQL++M +DE   M+FY CPCGD FEISLE+L+DGEDIAPCPSC+L++RVL++E DLP  P             L PVVA
Sbjct:    3 VYEEVQLKDMRYDEANLMFFYQCPCGDLFEISLEELHDGEDIAPCPSCSLKIRVLYEEEDLPALPTGANAPAERSSKPLPPVVA 86
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BLAST of mRNA_P-wetherbeei_contig6414.2.1 vs. uniprot
Match: A0A1V9ZHU1_9STRA (Diphthamide biosynthesis protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZHU1_9STRA)

HSP 1 Score: 103 bits (256), Expect = 1.400e-25
Identity = 44/79 (55.70%), Postives = 62/79 (78.48%), Query Frame = 1 
Query:   34 VYEEVQLREMDWDEDAQMYFYTCPCGDKFEISLEDLYDGEDIAPCPSCTLRLRVLFDEADLPPLRKEHKLMELDPGLQP 270
            VY+EV++ +M++DE  Q+Y+Y CPCGDKF I L++LYDGEDIA CPSC+L +R++FDE  LPPLR++ +    D G +P
Sbjct:    3 VYDEVEIEDMEFDEAEQIYYYPCPCGDKFFIGLDELYDGEDIASCPSCSLTIRIIFDEDALPPLREDDE----DGGNEP 77
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BLAST of mRNA_P-wetherbeei_contig6414.2.1 vs. uniprot
Match: A0A6A4D2K3_9STRA (DPH-type MB domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A4D2K3_9STRA)

HSP 1 Score: 103 bits (257), Expect = 1.740e-25
Identity = 43/79 (54.43%), Postives = 62/79 (78.48%), Query Frame = 1 
Query:   25 MTGVYEEVQLREMDWDEDAQMYFYTCPCGDKFEISLEDLYDGEDIAPCPSCTLRLRVLFDEADLPPLRKEHKLMELDPG 261
            M  VY+EV++ +M++D + Q+Y+Y CPCGD+F I LE+LYDGEDIA CPSC+L +RV+FDE +LP L++E    ++D G
Sbjct:    1 MAAVYDEVEIEDMEFDAEEQVYYYPCPCGDRFSIDLEELYDGEDIATCPSCSLTIRVVFDEENLPELKEEEDA-DMDTG 78
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BLAST of mRNA_P-wetherbeei_contig6414.2.1 vs. uniprot
Match: G4YJ90_PHYSP (DPH-type MB domain-containing protein n=12 Tax=Phytophthora TaxID=4783 RepID=G4YJ90_PHYSP)

HSP 1 Score: 102 bits (255), Expect = 1.980e-25
Identity = 41/72 (56.94%), Postives = 58/72 (80.56%), Query Frame = 1 
Query:   25 MTGVYEEVQLREMDWDEDAQMYFYTCPCGDKFEISLEDLYDGEDIAPCPSCTLRLRVLFDEADLPPLRKEHK 240
            M  VY+EV++ +M++D + Q+Y+Y CPCGD+F I LE+LYDGEDIA CPSC+L +RV+FDE  LP L++E +
Sbjct:    1 MAAVYDEVEIEDMEFDAEEQVYYYPCPCGDRFSIDLEELYDGEDIATCPSCSLTIRVIFDEETLPELKEEEE 72
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BLAST of mRNA_P-wetherbeei_contig6414.2.1 vs. uniprot
Match: A0A6S8TRC5_9STRA (Hypothetical protein n=2 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A6S8TRC5_9STRA)

HSP 1 Score: 102 bits (254), Expect = 7.130e-25
Identity = 41/67 (61.19%), Postives = 56/67 (83.58%), Query Frame = 1 
Query:   34 VYEEVQLREMDWDEDAQMYFYTCPCGDKFEISLEDLYDGEDIAPCPSCTLRLRVLFDEADLPPLRKE 234
            +YEEV++ ++D+D    +Y Y CPCGDKF I+LE+L+DGEDIAPCPSCTLR+ +++DE DLPPL +E
Sbjct:    3 IYEEVEIEDLDYDPVELLYTYPCPCGDKFRITLEELWDGEDIAPCPSCTLRIEIIYDEDDLPPLPEE 69
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BLAST of mRNA_P-wetherbeei_contig6414.2.1 vs. uniprot
Match: A0A662X3X8_9STRA (DPH-type MB domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X3X8_9STRA)

HSP 1 Score: 100 bits (250), Expect = 1.150e-24
Identity = 41/69 (59.42%), Postives = 58/69 (84.06%), Query Frame = 1 
Query:   34 VYEEVQLREMDWDEDAQMYFYTCPCGDKFEISLEDLYDGEDIAPCPSCTLRLRVLFDEADLPPLRKEHK 240
            VY+EV++ +M+++ + Q Y+Y CPCGDKF I+LEDLYDGEDIA CPSC+L +RV+FDE +LP L++E +
Sbjct:    3 VYDEVEIEDMEFNAEEQAYYYPCPCGDKFVIALEDLYDGEDIASCPSCSLTIRVVFDEDELPELKEEEE 71
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BLAST of mRNA_P-wetherbeei_contig6414.2.1 vs. uniprot
Match: A0A662Y1E6_9STRA (DPH-type MB domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y1E6_9STRA)

HSP 1 Score: 101 bits (252), Expect = 1.170e-24
Identity = 41/69 (59.42%), Postives = 58/69 (84.06%), Query Frame = 1 
Query:   34 VYEEVQLREMDWDEDAQMYFYTCPCGDKFEISLEDLYDGEDIAPCPSCTLRLRVLFDEADLPPLRKEHK 240
            VY+EV++ +M+++ + Q Y+Y CPCGDKF I+LEDLYDGEDIA CPSC+L +RV+FDE +LP L++E +
Sbjct:   27 VYDEVEIEDMEFNAEEQAYYYPCPCGDKFVIALEDLYDGEDIASCPSCSLTIRVVFDEGELPELKEEEE 95
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BLAST of mRNA_P-wetherbeei_contig6414.2.1 vs. uniprot
Match: K3WTP3_GLOUD (DPH-type MB domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WTP3_GLOUD)

HSP 1 Score: 99.0 bits (245), Expect = 5.840e-24
Identity = 40/67 (59.70%), Postives = 57/67 (85.07%), Query Frame = 1 
Query:   34 VYEEVQLREMDWDEDAQMYFYTCPCGDKFEISLEDLYDGEDIAPCPSCTLRLRVLFDEADLPPLRKE 234
            VY+EV++ +M++D + Q+Y+Y CPCGDKF I+L++LYDGEDIA CPSC+L LRV+F+E DLP L+ +
Sbjct:    3 VYDEVEIEDMEYDAEEQVYYYPCPCGDKFFITLDELYDGEDIATCPSCSLTLRVVFEEDDLPELKDD 69
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6414.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FV69_ECTSI7.830e-3063.53DPH-type MB domain-containing protein n=2 Tax=Ecto... [more]
A0A835Z4X0_9STRA2.030e-2764.63Diphthamide biosynthesis protein 3 n=1 Tax=Tribone... [more]
A0A7S2W7Y0_9STRA8.680e-2659.52Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A1V9ZHU1_9STRA1.400e-2555.70Diphthamide biosynthesis protein n=1 Tax=Achlya hy... [more]
A0A6A4D2K3_9STRA1.740e-2554.43DPH-type MB domain-containing protein n=3 Tax=Phyt... [more]
G4YJ90_PHYSP1.980e-2556.94DPH-type MB domain-containing protein n=12 Tax=Phy... [more]
A0A6S8TRC5_9STRA7.130e-2561.19Hypothetical protein n=2 Tax=Chaetoceros debilis T... [more]
A0A662X3X8_9STRA1.150e-2459.42DPH-type MB domain-containing protein n=1 Tax=Noth... [more]
A0A662Y1E6_9STRA1.170e-2459.42DPH-type MB domain-containing protein n=1 Tax=Noth... [more]
K3WTP3_GLOUD5.840e-2459.70DPH-type MB domain-containing protein n=1 Tax=Glob... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6414contigP-wetherbeei_contig6414:1383..1953 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FV69
Preferred nameDPH3
PFAMszf-CSL
Model size571
Max annot lvl2759|Eukaryota
KEGG rclassRC00004,RC00027,RC00627,RC02742,RC02744,RC02882
KEGG koko:K00162,ko:K15455
KEGG ReactionR00014,R00209,R01699,R03270
KEGG Pathwayko00010,ko00020,ko00620,ko01100,ko01110,ko01120,ko01130,ko01200,ko04066,ko04922,ko05230,map00010,map00020,map00620,map01100,map01110,map01120,map01130,map01200,map04066,map04922,map05230
KEGG ModuleM00307
Hectar predicted targeting categoryother localisation
GOsGO:0002097,GO:0002098,GO:0002791,GO:0002792,GO:0003674,GO:0003824,GO:0005488,GO:0005506,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006091,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006417,GO:0006448,GO:0006464,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008270,GO:0009055,GO:0009058,GO:0009451,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010608,GO:0016070,GO:0016491,GO:0017182,GO:0017183,GO:0018193,GO:0018202,GO:0019222,GO:0019538,GO:0022900,GO:0031323,GO:0031326,GO:0031974,GO:0031981,GO:0032268,GO:0032879,GO:0032880,GO:0034248,GO:0034470,GO:0034641,GO:0034660,GO:0036211,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0046872,GO:0046914,GO:0048519,GO:0048523,GO:0050708,GO:0050709,GO:0050789,GO:0050794,GO:0051046,GO:0051048,GO:0051049,GO:0051051,GO:0051098,GO:0051099,GO:0051171,GO:0051223,GO:0051224,GO:0051246,GO:0055114,GO:0060255,GO:0065007,GO:0065009,GO:0070013,GO:0070201,GO:0071704,GO:0080090,GO:0090087,GO:0090304,GO:1900247,GO:1901360,GO:1901564,GO:1903530,GO:1903531,GO:1904950,GO:2000112,GO:2000765
Exons1
Evalue6.11e-32
EggNOG OGsCOG5216@1|root,KOG2923@2759|Eukaryota
Ec32 ortholog descriptionZinc finger, DPH-type
Ec32 orthologEc-12_007340.1
EC1.2.4.1
Descriptionpeptidyl-diphthamide biosynthetic process from peptidyl-histidine
Cds size258
COG categoryO
BRITEbr01601,ko00000,ko00001,ko00002,ko01000,ko03012,ko03016
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186911.9635808-UTR-P-wetherbeei_contig6414:1382..14061683186911.9635808-UTR-P-wetherbeei_contig6414:1382..1406Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6414 1383..1406 +
1683186911.987586-UTR-P-wetherbeei_contig6414:1664..19531683186911.987586-UTR-P-wetherbeei_contig6414:1664..1953Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6414 1665..1953 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186911.977012-CDS-P-wetherbeei_contig6414:1406..16641683186911.977012-CDS-P-wetherbeei_contig6414:1406..1664Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6414 1407..1664 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6414.2.1prot_P-wetherbeei_contig6414.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6414 1407..1664 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6414.2.1

>prot_P-wetherbeei_contig6414.2.1 ID=prot_P-wetherbeei_contig6414.2.1|Name=mRNA_P-wetherbeei_contig6414.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=86bp
MTGVYEEVQLREMDWDEDAQMYFYTCPCGDKFEISLEDLYDGEDIAPCPS
CTLRLRVLFDEADLPPLRKEHKLMELDPGLQPVVA*
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mRNA from alignment at P-wetherbeei_contig6414:1383..1953+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6414.2.1 ID=mRNA_P-wetherbeei_contig6414.2.1|Name=mRNA_P-wetherbeei_contig6414.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=571bp|location=Sequence derived from alignment at P-wetherbeei_contig6414:1383..1953+ (Phaeothamnion wetherbeei SAG_119_79)
GCCACAGCGTCAGGTCAAGCCAAGATGACGGGTGTGTACGAGGAGGTCCA
GCTCCGAGAAATGGACTGGGACGAAGACGCGCAAATGTATTTCTACACGT
GCCCGTGCGGCGACAAGTTTGAGATCAGCCTCGAGGACCTGTACGACGGC
GAGGACATCGCGCCATGCCCGTCATGCACGCTGCGGTTGAGGGTGCTCTT
CGACGAGGCGGATCTTCCACCACTAAGAAAAGAACACAAGCTGATGGAGC
TAGATCCGGGCCTTCAGCCCGTTGTTGCGTGAAAGAAAGAAACATGGGAT
TGTCAAACTTCACACAGTTTCCGCAACGAAGGCGAGACGTAGTCGTCAGT
CGATGGATAACTATCGTGGCGTCGTGCCACGGCACCTGTATGTAGACGTA
AGCCCGACCTATTCAAGAAGGAAATTCTGTTCAATCACTTTCGTTTTAGC
AAGCCAGCGTACCGCTGCCGCCCTGCCGGCTCTTCCTTTTCCTAAATCTC
ATTGCCTCTCTGGAAGCATCCTGCTTATTGTGCACCTCATGGGAAAGTAA
TGGAAGGAGGTATCAGAAGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6414:1383..1953+

>mRNA_P-wetherbeei_contig6414.2.1 ID=mRNA_P-wetherbeei_contig6414.2.1|Name=mRNA_P-wetherbeei_contig6414.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=258bp|location=Sequence derived from alignment at P-wetherbeei_contig6414:1383..1953+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACGGGTGTGTACGAGGAGGTCCAGCTCCGAGAAATGGACTGGGACGA
AGACGCGCAAATGTATTTCTACACGTGCCCGTGCGGCGACAAGTTTGAGA
TCAGCCTCGAGGACCTGTACGACGGCGAGGACATCGCGCCATGCCCGTCA
TGCACGCTGCGGTTGAGGGTGCTCTTCGACGAGGCGGATCTTCCACCACT
AAGAAAAGAACACAAGCTGATGGAGCTAGATCCGGGCCTTCAGCCCGTTG
TTGCGTGA
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