mRNA_P-wetherbeei_contig6414.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
|
Overview
Homology
BLAST of mRNA_P-wetherbeei_contig6414.1.1 vs. uniprot
Match: A0A6H5L164_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L164_9PHAE) HSP 1 Score: 104 bits (259), Expect = 5.680e-24 Identity = 42/63 (66.67%), Postives = 53/63 (84.13%), Query Frame = 1
Query: 58 VDISYWRDIKKDDEWVSPYKAIGPAEKYVTFEPDCGGFNNIRMGFETAVVLALLTGRTLVLPP 246
VDI+YW+++ D+ WVSPY ++GPA KYVTFEPDC G+NN+RM FET VV A +TGRTLV+PP
Sbjct: 339 VDIAYWKEVPGDESWVSPYSSLGPAAKYVTFEPDCAGWNNVRMAFETVVVFAYVTGRTLVMPP 401
BLAST of mRNA_P-wetherbeei_contig6414.1.1 vs. uniprot
Match: A0A7S4W364_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4W364_9STRA) HSP 1 Score: 82.8 bits (203), Expect = 3.310e-18 Identity = 41/83 (49.40%), Postives = 54/83 (65.06%), Query Frame = 1
Query: 16 SCASHDSSLSLPRQVDISYWRDIKKDDEWVSPYKAIGPAE-KYVTFEPDCGGFNNIRMGFETAVVLALLTGRTLVLPPPRFVY 261
SC H+ S+ D+ YW +I D E+ SP+ P+E KY+TFEPD GG+NNIRM ET +V+A+ GRTLVLPP +Y
Sbjct: 8 SCVDHNGPESIESASDVVYWSNIPSDAEYKSPF--YDPSEEKYLTFEPDHGGWNNIRMSMETVLVMAVAMGRTLVLPPDAGMY 88
BLAST of mRNA_P-wetherbeei_contig6414.1.1 vs. uniprot
Match: A0A6S7ZGN1_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A6S7ZGN1_9STRA) HSP 1 Score: 86.7 bits (213), Expect = 9.110e-18 Identity = 37/66 (56.06%), Postives = 47/66 (71.21%), Query Frame = 1
Query: 64 ISYWRDIKKDDEWVSPYKAIGPAEKYVTFEPDCGGFNNIRMGFETAVVLALLTGRTLVLPPPRFVY 261
+ YW+++ KD W SPYK +GP KY+ FEPD GG+NN+R+GFE + LA TGRT VLPP VY
Sbjct: 153 VVYWQNLPKDKVWESPYKNLGPKNKYLLFEPDEGGWNNLRLGFEANLALAFATGRTFVLPPRDRVY 218
BLAST of mRNA_P-wetherbeei_contig6414.1.1 vs. uniprot
Match: A0A7S4AJA1_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AJA1_9STRA) HSP 1 Score: 84.3 bits (207), Expect = 5.930e-17 Identity = 38/81 (46.91%), Postives = 52/81 (64.20%), Query Frame = 1
Query: 19 CASHDSSLSLPRQVDISYWRDIKKDDEWVSPYKAIGPAEKYVTFEPDCGGFNNIRMGFETAVVLALLTGRTLVLPPPRFVY 261
C+ HD + +++YWRDIK D+ W SP+ + Y+TFEPD GG+NNIRM ET + +AL GR LVLPP + +Y
Sbjct: 134 CSEHDGPNRMEDAQEMAYWRDIKPDNSWTSPFLKKDKRQ-YLTFEPDGGGWNNIRMSMETVLTMALAMGRVLVLPPSQKMY 213
BLAST of mRNA_P-wetherbeei_contig6414.1.1 vs. uniprot
Match: B5Y3N4_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B5Y3N4_PHATC) HSP 1 Score: 83.6 bits (205), Expect = 1.090e-16 Identity = 37/87 (42.53%), Postives = 57/87 (65.52%), Query Frame = 1
Query: 1 RVLKTSCASHDSSLSLPRQVDISYWRDIKKDDEWVSPYKAIGPAEKYVTFEPDCGGFNNIRMGFETAVVLALLTGRTLVLPPPRFVY 261
R+ + +C ++ L ++ YW+DI +D ++ SP+ G ++Y+TFEPD GGFNN+RM ET + +A TGRTLVLPP + +Y
Sbjct: 77 RMAQLTCDAYGGPLDKEATDEMVYWQDIPEDSKFKSPFLESG-TQRYLTFEPDIGGFNNVRMSMETVIAIAHATGRTLVLPPEQNIY 162
BLAST of mRNA_P-wetherbeei_contig6414.1.1 vs. uniprot
Match: A0A448ZJR9_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZJR9_9STRA) HSP 1 Score: 81.6 bits (200), Expect = 5.220e-16 Identity = 37/67 (55.22%), Postives = 45/67 (67.16%), Query Frame = 1
Query: 61 DISYWRDIKKDDEWVSPYKAIGPAEKYVTFEPDCGGFNNIRMGFETAVVLALLTGRTLVLPPPRFVY 261
++ YWRDI D + SPY + G KY+TFEPD GGFNNIRM ETA +A GR LVLPP + +Y
Sbjct: 133 EMVYWRDIPSDAHFTSPYASYGDDPKYLTFEPDEGGFNNIRMSMETATAMAHAMGRILVLPPEQEIY 199
BLAST of mRNA_P-wetherbeei_contig6414.1.1 vs. uniprot
Match: A0A7S3PYB4_9STRA (Hypothetical protein n=2 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PYB4_9STRA) HSP 1 Score: 81.3 bits (199), Expect = 7.210e-16 Identity = 42/87 (48.28%), Postives = 54/87 (62.07%), Query Frame = 1
Query: 16 SCASHDSSLSLPRQVDISYWRDIKKDDEWVSPYKAIGPAEK-----YVTFEPDCGGFNNIRMGFETAVVLALLTGRTLVLPPPRFVY 261
SC+ + ++ YW DIK D E+VSP+K A+K Y+TFEPD GG+NNIRM ET VV+A GRTLVLPP + +Y
Sbjct: 223 SCSVYGGPDDESATKEMIYWSDIKSDAEYVSPFKKHNDAKKGSATQYMTFEPDGGGWNNIRMAMETVVVMAHAMGRTLVLPPAQGMY 309
BLAST of mRNA_P-wetherbeei_contig6414.1.1 vs. uniprot
Match: K0RI29_THAOC (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RI29_THAOC) HSP 1 Score: 79.7 bits (195), Expect = 7.840e-16 Identity = 38/71 (53.52%), Postives = 51/71 (71.83%), Query Frame = 1
Query: 61 DISYWRDIK--KDDEWVSPYKA--IGPAEKYVTFEPDCGGFNNIRMGFETAVVLALLTGRTLVLPPPRFVY 261
D++YW + +D+E+VSP+K + KY+TFEPD GGFNNIRM E +V+A TGRTLVLPPP+ +Y
Sbjct: 184 DLAYWNSPQGTRDEEFVSPFKVEDLPGKAKYLTFEPDPGGFNNIRMSLENILVIAAATGRTLVLPPPQRIY 254
BLAST of mRNA_P-wetherbeei_contig6414.1.1 vs. uniprot
Match: A0A7S2LNI6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LNI6_9STRA) HSP 1 Score: 79.3 bits (194), Expect = 9.510e-16 Identity = 41/83 (49.40%), Postives = 52/83 (62.65%), Query Frame = 1
Query: 16 SCASHDS-SLSLPRQVDISYWRDIKKDDEWVSPYKAIGPAEKYVTFEPDCGGFNNIRMGFETAVVLALLTGRTLVLPPPRFVY 261
SC+ H S L +++ YW DI DD +VSP A KY+TFEPD GGFNNIRM ET +V+A RTLV+PP + +Y
Sbjct: 126 SCSDHGGPSDDLAKEM--IYWSDIPSDDAFVSPIGANSKKRKYLTFEPDGGGFNNIRMSMETMIVMAHAMSRTLVMPPSQGMY 206
BLAST of mRNA_P-wetherbeei_contig6414.1.1 vs. uniprot
Match: B5Y3Q8_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B5Y3Q8_PHATC) HSP 1 Score: 80.1 bits (196), Expect = 1.800e-15 Identity = 39/84 (46.43%), Postives = 51/84 (60.71%), Query Frame = 1
Query: 19 CASHDSSLSLPRQVDISYWRDIKKDDEWVSPYKAIGPAEK---YVTFEPDCGGFNNIRMGFETAVVLALLTGRTLVLPPPRFVY 261
C H ++ YWRDI KD + SP+++ + + Y+TFEPD GG+NNIRM ETAV LAL GR LVLPP + +Y
Sbjct: 51 CHDHGGPTDSLAAEEMVYWRDIPKDASFASPFRSTASSSQRNQYLTFEPDEGGWNNIRMAMETAVTLALAMGRILVLPPEQNIY 134 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6414.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig6414.1.1 >prot_P-wetherbeei_contig6414.1.1 ID=prot_P-wetherbeei_contig6414.1.1|Name=mRNA_P-wetherbeei_contig6414.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=97bp RVLKTSCASHDSSLSLPRQVDISYWRDIKKDDEWVSPYKAIGPAEKYVTFback to top mRNA from alignment at P-wetherbeei_contig6414:84..675- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig6414.1.1 ID=mRNA_P-wetherbeei_contig6414.1.1|Name=mRNA_P-wetherbeei_contig6414.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=592bp|location=Sequence derived from alignment at P-wetherbeei_contig6414:84..675- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig6414:84..675- >mRNA_P-wetherbeei_contig6414.1.1 ID=mRNA_P-wetherbeei_contig6414.1.1|Name=mRNA_P-wetherbeei_contig6414.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=291bp|location=Sequence derived from alignment at P-wetherbeei_contig6414:84..675- (Phaeothamnion wetherbeei SAG_119_79)back to top |