mRNA_P-wetherbeei_contig6414.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6414.3.1
Unique NamemRNA_P-wetherbeei_contig6414.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6414.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6414contigP-wetherbeei_contig6414:1989..3430 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1053
Hectar predicted targeting categorysignal peptide
Exons2
Ec32 ortholog descriptionHeat shock protein DnaJ, cysteine-rich domain
Ec32 orthologEc-08_004890.1
Cds size606
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186911.85682-UTR-P-wetherbeei_contig6414:1988..23831683186911.85682-UTR-P-wetherbeei_contig6414:1988..2383Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6414 1989..2383 -
1683186911.8917148-UTR-P-wetherbeei_contig6414:3378..34301683186911.8917148-UTR-P-wetherbeei_contig6414:3378..3430Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6414 3379..3430 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186911.8688934-CDS-P-wetherbeei_contig6414:2383..26271683186911.8688934-CDS-P-wetherbeei_contig6414:2383..2627Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6414 2384..2627 -
1683186911.8801823-CDS-P-wetherbeei_contig6414:3016..33781683186911.8801823-CDS-P-wetherbeei_contig6414:3016..3378Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6414 3017..3378 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6414.3.1prot_P-wetherbeei_contig6414.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6414 2384..3378 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6414.3.1

>prot_P-wetherbeei_contig6414.3.1 ID=prot_P-wetherbeei_contig6414.3.1|Name=mRNA_P-wetherbeei_contig6414.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=202bp
MNTNYFERKNMGFLTILLAACALCASLLSTARAFVAPYAPAWRSNSRWRS
FALSAAPDGDVGGEGMADGDQERDEKEDGADWLPGSAPPPARLDRVSEGL
GRGVQPRAQRLRQYKEGLEIRWRMGQQQAAGSEAKACRRCSGSGFWECRF
CSGTGFLRFNGEIVRSAGGAVSSCPICKARGEEACGRCHGTGSIAAWLVQ
P*
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mRNA from alignment at P-wetherbeei_contig6414:1989..3430-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6414.3.1 ID=mRNA_P-wetherbeei_contig6414.3.1|Name=mRNA_P-wetherbeei_contig6414.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1442bp|location=Sequence derived from alignment at P-wetherbeei_contig6414:1989..3430- (Phaeothamnion wetherbeei SAG_119_79)
GTCTCCCCTTATTTTTTTTTATTTTCTCCTTACCCCATGATGAGAGTAGA
AAATGAACACAAACTATTTTGAAAGAAAAAACATGGGATTTCTTACGATT
CTCTTGGCAGCGTGCGCCCTATGTGCGTCCCTACTCTCCACAGCCCGGGC
CTTCGTAGCCCCGTACGCCCCAGCATGGCGATCTAACTCCAGATGGCGAT
CCTTCGCATTGTCAGCTGCTCCAGACGGGGACGTCGGAGGAGAGGGAATG
GCGGACGGAGACCAGGAGCGCGACGAAAAGGAAGATGGGGCAGACTGGTT
GCCGGGCTCGGCGCCGCCGCCAGCGCGGCTCGACCGCGTGTCTGAGGGGC
TCGGGAGGGGGGTCCAACCGAGGGCACAACGATTGCGTCAATATAAGGAA
GGGCTAGAAATAAGGTGCGACCGTATTTTCTTAAGACTCTGCATGAATTG
CAGTGTCTTAACCATTGTTTCTCTTCGACTTCTTTTCCGTTTGGGCTTTC
CCTTCCCCTATCCATAACTTAAGCTGTCTTTTATTCTTGCATTTTCATTC
GAAGACGTGTTAACTGCGGAGCTAGTAGCGTCGTTTCAAGGGGTGTTAGG
AATGGCCGGACATATTTACTTTATCACTGAACCTGCATCGGACGATCCTT
TTTTGAAAATCCCTTTTCTGTCTAATAGCATTCGCGCATTTCATACCTCT
TGTCGTTACTTGTTTGCGACGTCACAGACGCCGGCCATCCCGATTCAAGT
TTTGAAGGCAAAAATGGCCCCTCATGACATGCCCGCCTCTACACCGTGCA
CAGGTGGCGAATGGGGCAGCAACAAGCCGCGGGCAGCGAGGCCAAGGCCT
GCCGTCGTTGCAGCGGTAGCGGCTTCTGGGAATGCCGCTTCTGCAGCGGC
ACGGGGTTCCTCCGCTTCAACGGCGAGATTGTGCGGTCTGCCGGCGGCGC
AGTGTCGTCGTGCCCCATCTGTAAGGCCCGCGGCGAGGAGGCGTGCGGCC
GCTGCCATGGCACCGGCAGCATAGCTGCATGGCTGGTGCAGCCGTGATTT
GATGGACGGACATAGGAGCGACAAACACGGCGGCGGTGGCGATATGGGCT
GGTGGCATTGCCGGCAGTGGCAGTGCCTATGGGTTCCACGACGTATTCAC
GCTCGTGGCTTCCCACGGCCACAGCTCACGAGAAGAGACGCAGGAGACGG
AAAGAAGGAACATATGCATTCACTGGAGAGAGGGCCTGGCAGAAAGCAAG
TGGAGGGGAAAGAAGCGCCGTTTTCCGGTAAGGGCGCTCGCGGACGAGAG
AGCTTCCGCGCATCAGAAGCGAGACTGGCACGGGGCGTTAAGGTGTAGGT
AATGGCAGGAAAATAGGAGGGAATGAGGGAAAGGCGTGAAGACTGGAATC
AAACAAGTTTTAAAATACGAATAACAGAGAAACGGAAAAGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6414:1989..3430-

>mRNA_P-wetherbeei_contig6414.3.1 ID=mRNA_P-wetherbeei_contig6414.3.1|Name=mRNA_P-wetherbeei_contig6414.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=606bp|location=Sequence derived from alignment at P-wetherbeei_contig6414:1989..3430- (Phaeothamnion wetherbeei SAG_119_79)
ATGAACACAAACTATTTTGAAAGAAAAAACATGGGATTTCTTACGATTCT
CTTGGCAGCGTGCGCCCTATGTGCGTCCCTACTCTCCACAGCCCGGGCCT
TCGTAGCCCCGTACGCCCCAGCATGGCGATCTAACTCCAGATGGCGATCC
TTCGCATTGTCAGCTGCTCCAGACGGGGACGTCGGAGGAGAGGGAATGGC
GGACGGAGACCAGGAGCGCGACGAAAAGGAAGATGGGGCAGACTGGTTGC
CGGGCTCGGCGCCGCCGCCAGCGCGGCTCGACCGCGTGTCTGAGGGGCTC
GGGAGGGGGGTCCAACCGAGGGCACAACGATTGCGTCAATATAAGGAAGG
GCTAGAAATAAGGTGGCGAATGGGGCAGCAACAAGCCGCGGGCAGCGAGG
CCAAGGCCTGCCGTCGTTGCAGCGGTAGCGGCTTCTGGGAATGCCGCTTC
TGCAGCGGCACGGGGTTCCTCCGCTTCAACGGCGAGATTGTGCGGTCTGC
CGGCGGCGCAGTGTCGTCGTGCCCCATCTGTAAGGCCCGCGGCGAGGAGG
CGTGCGGCCGCTGCCATGGCACCGGCAGCATAGCTGCATGGCTGGTGCAG
CCGTGA
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