mRNA_P-wetherbeei_contig6413.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6413.2.1
Unique NamemRNA_P-wetherbeei_contig6413.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig6413.2.1 vs. uniprot
Match: A0A835Z7S4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7S4_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 4.820e-17
Identity = 46/74 (62.16%), Postives = 56/74 (75.68%), Query Frame = 1 
Query:   94 SAPKTQG-VKMSLDAFASAIPAAAQTQLAELANSAIVLA---GKTDDFGGYIGPISGLVAIGALILVLSPPLQD 303
            SAPKTQ  + MSLDAFA+A+P AAQ       N+A++LA    K  DFGGY+GP++GL+AIGALILVLSPPL D
Sbjct:   30 SAPKTQAKMSMSLDAFATALPQAAQATN----NAAVILAEASSKAGDFGGYVGPVAGLLAIGALILVLSPPLVD 99
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BLAST of mRNA_P-wetherbeei_contig6413.2.1 vs. uniprot
Match: A0A4D9CRV1_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CRV1_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 1.990e-7
Identity = 24/36 (66.67%), Postives = 30/36 (83.33%), Query Frame = 1 
Query:  190 SAIVLAGKTDDFGGYIGPISGLVAIGALILVLSPPL 297
            S ++LA K  DFGGY GPI+GL+ +GALILVL+PPL
Sbjct:   54 SDVLLAAKDTDFGGYTGPIAGLITLGALILVLAPPL 89
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BLAST of mRNA_P-wetherbeei_contig6413.2.1 vs. uniprot
Match: W7T5H2_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T5H2_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 6.150e-7
Identity = 25/38 (65.79%), Postives = 31/38 (81.58%), Query Frame = 1 
Query:  184 ANSAIVLAGKTDDFGGYIGPISGLVAIGALILVLSPPL 297
            A S ++LA K  DFGGY GPI+GL+ +GALILVL+PPL
Sbjct:  131 AASDVLLAAKDTDFGGYTGPIAGLITLGALILVLAPPL 168
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BLAST of mRNA_P-wetherbeei_contig6413.2.1 vs. uniprot
Match: A0A1X6P042_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P042_PORUM)

HSP 1 Score: 52.8 bits (125), Expect = 6.900e-7
Identity = 33/87 (37.93%), Postives = 49/87 (56.32%), Query Frame = 1 
Query:   46 VGAVRA-GAFAPALPATSAPKTQGVKMSLDAFASAIPAAAQTQLAELANSAIVLAGKTDDFGGYIGPISGLVAIGALILVLSPPLQD 303
            VGA  A  A AP  PATSA     V  ++    S    + +  +  ++NS + L     DFGGY GP++GLV IG +I +L+PP+++
Sbjct:    4 VGAAAAFRASAPTRPATSAFTGTRVSAAVSRRTSGPVMSLEPVVTSISNSLVTLGAADGDFGGYTGPVAGLVIIGVIIALLTPPVKE 90
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BLAST of mRNA_P-wetherbeei_contig6413.2.1 vs. uniprot
Match: A0A2V3J0D8_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J0D8_9FLOR)

HSP 1 Score: 48.9 bits (115), Expect = 2.080e-5
Identity = 25/51 (49.02%), Postives = 35/51 (68.63%), Query Frame = 1 
Query:  151 PAAAQTQLAELANSAIVLAGKTDDFGGYIGPISGLVAIGALILVLSPPLQD 303
            P A Q  L  L ++AI+L+ K  DFGGY GPI GL+ I  +I VL+PP+++
Sbjct:   39 PLAQQVSL-RLNDAAILLSAKDVDFGGYTGPIIGLLTIAVIIAVLTPPVKE 88
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6413.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A835Z7S4_9STRA4.820e-1762.16Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A4D9CRV1_9STRA1.990e-766.67Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
W7T5H2_9STRA6.150e-765.79Uncharacterized protein n=1 Tax=Nannochloropsis ga... [more]
A0A1X6P042_PORUM6.900e-737.93Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A2V3J0D8_9FLOR2.080e-549.02Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6413contigP-wetherbeei_contig6413:2957..3262 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2850.Phatr46433
Model size306
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.09e-05
EggNOG OGs2EZE9@1|root,2T0RN@2759|Eukaryota,2XHJT@2836|Bacillariophyta
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-24_001000.1
Cds size306
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186911.8255117-CDS-P-wetherbeei_contig6413:2956..32621683186911.8255117-CDS-P-wetherbeei_contig6413:2956..3262Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6413 2957..3262 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6413.2.1prot_P-wetherbeei_contig6413.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6413 2957..3262 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6413.2.1

>prot_P-wetherbeei_contig6413.2.1 ID=prot_P-wetherbeei_contig6413.2.1|Name=mRNA_P-wetherbeei_contig6413.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=102bp
ILFFSPETPPSFSTMVGAVRAGAFAPALPATSAPKTQGVKMSLDAFASAI
PAAAQTQLAELANSAIVLAGKTDDFGGYIGPISGLVAIGALILVLSPPLQ
D*
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mRNA from alignment at P-wetherbeei_contig6413:2957..3262-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6413.2.1 ID=mRNA_P-wetherbeei_contig6413.2.1|Name=mRNA_P-wetherbeei_contig6413.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=306bp|location=Sequence derived from alignment at P-wetherbeei_contig6413:2957..3262- (Phaeothamnion wetherbeei SAG_119_79)
ATTCTTTTCTTTTCGCCTGAAACTCCTCCATCGTTTTCGACGATGGTGGG
AGCAGTGCGGGCCGGCGCATTCGCCCCTGCTTTGCCAGCGACGTCGGCAC
CCAAAACCCAGGGTGTGAAGATGTCCCTGGACGCGTTCGCGAGCGCCATC
CCGGCAGCGGCACAGACGCAGCTGGCGGAGCTTGCCAATTCGGCCATTGT
GCTGGCGGGCAAGACTGACGACTTCGGCGGATACATTGGCCCGATCTCGG
GACTGGTCGCCATCGGCGCTCTCATCCTGGTGCTGTCGCCCCCCCTGCAG
GACTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6413:2957..3262-

>mRNA_P-wetherbeei_contig6413.2.1 ID=mRNA_P-wetherbeei_contig6413.2.1|Name=mRNA_P-wetherbeei_contig6413.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=306bp|location=Sequence derived from alignment at P-wetherbeei_contig6413:2957..3262- (Phaeothamnion wetherbeei SAG_119_79)
ATTCTTTTCTTTTCGCCTGAAACTCCTCCATCGTTTTCGACGATGGTGGG
AGCAGTGCGGGCCGGCGCATTCGCCCCTGCTTTGCCAGCGACGTCGGCAC
CCAAAACCCAGGGTGTGAAGATGTCCCTGGACGCGTTCGCGAGCGCCATC
CCGGCAGCGGCACAGACGCAGCTGGCGGAGCTTGCCAATTCGGCCATTGT
GCTGGCGGGCAAGACTGACGACTTCGGCGGATACATTGGCCCGATCTCGG
GACTGGTCGCCATCGGCGCTCTCATCCTGGTGCTGTCGCCCCCCCTGCAG
GACTAA
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