mRNA_P-wetherbeei_contig6412.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6412.1.1
Unique NamemRNA_P-wetherbeei_contig6412.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6412.1.1 vs. uniprot
Match: F0YDU7_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YDU7_AURAN)

HSP 1 Score: 233 bits (595), Expect = 3.300e-73
Identity = 132/228 (57.89%), Postives = 163/228 (71.49%), Query Frame = 2
Query:  254 MAAAEPNNTIYIHNLNEKIKKPVLKKSLHSIFSQFGRIIDIVACRGEKLRGQAWVVFEDKAAATNAVKQMQGFPFYDKPMRIEFSKNESDVIARRRGTFVPREKRQKTEAAKGPKGPQQLGQEPAGAPPATSMGAAPT-AVGGPGGPLAAPNSVLFAENLPAECTQGMLNLLFQQYRGLREVRMAAGQGGRGVAFVEFEDATLAGLALQGLAGFKLTQTDALQLSYAK 934
            MA+ +PN T+YI+NLNEKIKK  LKKS++S+FSQFG+I+D+V CRG KLRGQAWVVF D  AATNA++QMQGFPF+DKPMRI F+K +SDV+++  G+FV REKR K EA             P  APPAT    AP  A        A P++VLFA++LP +C   ML++LFQQY G +EVRM  G+  +G+AFVEF D T A LALQGL  FKLT TD L LS+AK
Sbjct:    1 MASVQPNQTVYINNLNEKIKKDALKKSIYSVFSQFGKILDVVCCRGLKLRGQAWVVFADVGAATNALRQMQGFPFFDKPMRIAFAKAKSDVVSKADGSFVAREKR-KREAP------------PPKAPPATEALEAPKPAKAAKADKNATPSNVLFAQDLPDDCNDMMLSILFQQYGGFKEVRMVPGK--KGIAFVEFADETQASLALQGLDNFKLTPTDTLALSFAK 213          
BLAST of mRNA_P-wetherbeei_contig6412.1.1 vs. uniprot
Match: A0A7S2UV81_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UV81_9STRA)

HSP 1 Score: 228 bits (582), Expect = 2.340e-71
Identity = 132/224 (58.93%), Postives = 156/224 (69.64%), Query Frame = 2
Query:  272 NNTIYIHNLNEKIKKPVLKKSLHSIFSQFGRIIDIVACRGEKLRGQAWVVFEDKAAATNAVKQMQGFPFYDKPMRIEFSKNESDVIARRRGTFVPREKRQKTEAAKGPKGPQQLGQEPAGAPPATSMGAAP----TAVGGPGGPLAAPNSVLFAENLPAECTQGMLNLLFQQYRGLREVRMAAGQGGRGVAFVEFEDATLAGLALQGLAGFKLTQTDALQLSYA 931
            N TIYI+NLNEKIKK VLKKSLHSIFSQFG+II I ACRG KLRGQAWVVF+DKA+ATNA++QMQGFPFY+KPMRI FSK +SDV+A+R GT+  R++          K P      PA AP A +  +AP    TA  G   P   PN +LFAE LP +C + +L +LF+QY G  EVRM  G+ G  +AFVEFED   AG A+ GL GFKLT  D L LSYA
Sbjct:    2 NETIYINNLNEKIKKEVLKKSLHSIFSQFGKIIQITACRGIKLRGQAWVVFQDKASATNALRQMQGFPFYEKPMRIAFSKTKSDVVAKRDGTYTKRKR----------KAP------PAPAPDAPAQPSAPFAQTTAAAGKNNP---PNRILFAEGLPDDCNEMVLGMLFKQYIGFSEVRMVPGKSG--IAFVEFEDEMQAGYAMTGLNGFKLTPNDTLSLSYA 204          
BLAST of mRNA_P-wetherbeei_contig6412.1.1 vs. uniprot
Match: A0A6V1NUL1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NUL1_HETAK)

HSP 1 Score: 227 bits (578), Expect = 2.340e-70
Identity = 133/232 (57.33%), Postives = 164/232 (70.69%), Query Frame = 2
Query:  266 EPNNTIYIHNLNEKIKKPVLKKSLHSIFSQFGRIIDIVACRGEKLRGQAWVVFEDKAAATNAVKQMQGFPFYDKPMRIEFSKNESDVIARRRGTFVPREKRQKTEAAKGP-------KGPQQLGQEPAGAPPATSMGAAPTAVGGPGGPLAA--PNSVLFAENLPAECTQGMLNLLFQQYRGLREVRMAAGQGGRGVAFVEFEDATLAGLALQGLAGFKLTQTDALQLSYAK 934
            +P  TIYI+NLNEKIKK VLKKSLHSIFSQFG+II+IVACRG KLRGQAWV F D AAATNA++QMQGFPFY+KPMRI F+KN+SD + +R G + P +KR+K E            +    + QEP    PA  +  A TAV     P+ A  P+ +LFA+NLP +C + ML++LFQQY G +EVRM  G+  +G+AF+EF D   AG ALQGL GFKLT  D LQLSYA+
Sbjct:    7 KPLETIYINNLNEKIKKDVLKKSLHSIFSQFGKIIEIVACRGLKLRGQAWVCFADTAAATNALRQMQGFPFYEKPMRIAFAKNKSDKVLKREGVYDPAKKRRKMEXXXXXXXXXXXXESVAAMEQEPT---PAAVVQPAFTAVQQVEQPVPANVPHRILFAQNLPDDCNEMMLDMLFQQYNGYKEVRMVPGK--KGLAFIEFGDEMQAGYALQGLNGFKLTPQDLLQLSYAR 233          
BLAST of mRNA_P-wetherbeei_contig6412.1.1 vs. uniprot
Match: A0A8J2X4I1_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X4I1_9STRA)

HSP 1 Score: 225 bits (573), Expect = 7.440e-70
Identity = 131/238 (55.04%), Postives = 159/238 (66.81%), Query Frame = 2
Query:  254 MAAAEPNNTIYIHNLNEKIKKPVLKKSLHSIFSQFGRIIDIVACRGEKLRGQAWVVFEDKAAATNAVKQMQGFPFYDKPMRIEFSKNESDVIARRRGTFVPREKRQKTEAAKGPKGPQQLGQEPAGAPPATSMGAAPTAVGGPGGPLAAPNSVLFA-----------ENLPAECTQGMLNLLFQQYRGLREVRMAAGQGGRGVAFVEFEDATLAGLALQGLAGFKLTQTDALQLSYAK 934
            MAA EPN T+YI+NLNEKIKK  LKKS++S+FSQFG+I+D+V CRG KLRGQAWVVF D  AATNA++QMQGFPFYDKPMRI F+K++SD+IA+R GTF PREKR++              ++P  A PA +      A+  PG   A P  V               NLP +C+  ML +LFQQY G +EVRM  G   +G+AFVEF D T A LA QGL GFKLT TDAL L +AK
Sbjct:    1 MAAIEPNQTVYINNLNEKIKKDALKKSIYSVFSQFGKILDVVCCRGLKLRGQAWVVFADVGAATNALRQMQGFPFYDKPMRIAFAKSKSDMIAKRDGTFKPREKRKR--------------EDPKPAAPAAAK-----ALPAPGD--APPPKVXXXXXXXXXXXXXXSNLPEDCSDMMLGILFQQYAGFKEVRMVPGN--KGIAFVEFADETQASLARQGLDGFKLTPTDALSLVFAK 215          
BLAST of mRNA_P-wetherbeei_contig6412.1.1 vs. uniprot
Match: A0A7S2DHN7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DHN7_9STRA)

HSP 1 Score: 221 bits (562), Expect = 6.480e-68
Identity = 125/229 (54.59%), Postives = 160/229 (69.87%), Query Frame = 2
Query:  251 EMAAAEPNNTIYIHNLNEKIKKPVLKKSLHSIFSQFGRIIDIVACRGEKLRGQAWVVFEDKAAATNAVKQMQGFPFYDKPMRIEFSKNESDVIARRRGTFVPREKRQKTEAAKGPKGPQQLGQEPAGAPPATSMGAAPTAVGGPGGPL-AAPNSVLFAENLPAECTQGMLNLLFQQYRGLREVRMAAGQGGRGVAFVEFEDATLAGLALQGLAGFKLTQTDALQLSYAK 934
            EMA   P+ TIYI+NLNEKIKK  L+K+L+S+FSQFG+I++IVACRG KLRGQAW+ FE   AAT+A+ +MQGFPFYDKPM+I FSK +SD +A+R GTFV REKR++ E A       +   EP     + S  + PT        L A P+S+LFA+NLP +C   ML++LF+ Y G +EVRM  G+  +G+AF+EF D   AG ALQGL GFKLT T  L LS+AK
Sbjct:   15 EMADISPSQTIYINNLNEKIKKQPLRKALYSVFSQFGKIVEIVACRGLKLRGQAWICFETVEAATHAMAKMQGFPFYDKPMKIAFSKTKSDCVAKRDGTFVAREKRKREEKAP------RAESEPTAMDTSASKISTPTPQILQAADLNATPSSILFAQNLPEDCNDMMLSMLFKTYAGFKEVRMVPGK--KGLAFIEFTDEVSAGSALQGLHGFKLTPTQTLALSFAK 235          
BLAST of mRNA_P-wetherbeei_contig6412.1.1 vs. uniprot
Match: A0A7S3NJ60_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NJ60_9STRA)

HSP 1 Score: 219 bits (557), Expect = 2.070e-67
Identity = 124/233 (53.22%), Postives = 160/233 (68.67%), Query Frame = 2
Query:  251 EMAAAEPNNTIYIHNLNEKIKKPVLKKSLHSIFSQFGRIIDIVACRGEKLRGQAWVVFEDKAAATNAVKQMQGFPFYDKPMRIEFSKNESDVIARRRGTFVPREKRQKTEAAKGPKGPQQLGQEPAGAPPATSMGAAPTA-----VGGPGGPLAAPNSVLFAENLPAECTQGMLNLLFQQYRGLREVRMAAGQGGRGVAFVEFEDATLAGLALQGLAGFKLTQTDALQLSYAK 934
            E  A + N T+YI+NLNEKIKK VLKK+L+S+FSQFG+I+D+V CRG +LRGQAW+ F D  AAT+A+++MQGFPFYDKPMRI F+K++SD+IA+  GTFV REKR++                   +PPA +  AA  A     +  P   L  P++VLFA+NLP EC Q ML +LFQQY G +EVRM  G+  +G+AF+EF D   A LAL GL GF L+ T AL LS+AK
Sbjct:    5 EDVALQVNQTLYINNLNEKIKKQVLKKALYSLFSQFGKILDLVCCRGIRLRGQAWICFADIGAATSAMQKMQGFPFYDKPMRIAFAKSKSDIIAKADGTFVSREKRKRE------------------SPPAANTDAAHQAPQKKQLPTPPTNLTPPSNVLFAQNLPDECNQNMLVILFQQYTGYKEVRMVPGK--KGIAFIEFADDVQASLALAGLNGFSLSPTHALNLSFAK 217          
BLAST of mRNA_P-wetherbeei_contig6412.1.1 vs. uniprot
Match: A0A812Y221_SYMMI (Snrpb2 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812Y221_SYMMI)

HSP 1 Score: 211 bits (538), Expect = 1.570e-64
Identity = 110/222 (49.55%), Postives = 158/222 (71.17%), Query Frame = 2
Query:  269 PNNTIYIHNLNEKIKKPVLKKSLHSIFSQFGRIIDIVACRGEKLRGQAWVVFEDKAAATNAVKQMQGFPFYDKPMRIEFSKNESDVIARRRGTFVPREKRQKTEAAKGPKGPQQLGQEPAGAPPATSMGAAPTAVGGPGGPLAAPNSVLFAENLPAECTQGMLNLLFQQYRGLREVRMAAGQGGRGVAFVEFEDATLAGLALQGLAGFKLTQTDALQLSYAK 934
            P+ T+YI+N+NEKIKK VLKK+L+++FSQ+G++I+IVAC+G +LRGQAW+V++D ++ATNA++++QGF FYDKP+RI F+K +SD++A++ GTF PR+KR + E +        +      APP       P A          P+ +LFA+NLP EC   ML  LFQQY G +EVRMA G+  +G+AF+EF+D   AG+ALQ L+GF+L+  D LQL+Y K
Sbjct:    5 PSQTLYINNINEKIKKDVLKKTLYALFSQYGKVIEIVACKGIRLRGQAWIVYQDTSSATNAMRRLQGFNFYDKPLRISFAKTKSDIVAKKDGTFNPRQKRVREEQSSA------MEDGARAAPPPAQYKEPPVAKTPKPIVNNVPHRILFAQNLPDECNDQMLAALFQQYPGFQEVRMAPGK--KGIAFIEFQDVVQAGIALQQLSGFQLSAADTLQLTYGK 218          
BLAST of mRNA_P-wetherbeei_contig6412.1.1 vs. uniprot
Match: D7FNU9_ECTSI (RNA binding / nucleic acid binding n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNU9_ECTSI)

HSP 1 Score: 211 bits (538), Expect = 4.440e-64
Identity = 126/251 (50.20%), Postives = 163/251 (64.94%), Query Frame = 2
Query:  272 NNTIYIHNLNEKIKKPVLKKSLHSIFSQFGRIIDIVACRGEKLRGQAWVVFEDKAAATNAVKQMQGFPFYDKPMRIEFSKNESDVIARRRGTFVPREKRQKTEA-AKGPKGPQQLGQEPAGAPPATSMGAAPT----------------------------AVGGPGGPLA-APNSVLFAENLPAECTQGMLNLLFQQYRGLREVRMAAGQGGRGVAFVEFEDATLAGLALQGLAGFKLTQTDALQLSYAK 934
            N+TIY+ NLNEKIKKP+LKKSLHS+FSQFG+I+DIVACRG KL+GQAWVVF +K+ ATNA++QMQGFPF++K MRI+F+K+ESDV+ ++ GT+VPR+KR+   A A    G  Q    PA    AT+ GA                               AV  P GP+   P+++L+A  LP E TQ ML+ LF+QY G  E RMA G    G AF+EF D   AG+AL  L GFKL+ T+ LQL++A+
Sbjct:    8 NHTIYVSNLNEKIKKPLLKKSLHSVFSQFGKIVDIVACRGLKLKGQAWVVFAEKSMATNALRQMQGFPFFEKKMRIQFAKSESDVVTKKAGTYVPRDKRKLPSADASNGNGLHQAAPAPA----ATTPGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVPQPAGPIGDVPHNILYATGLPPEITQVMLSKLFEQYPGFSEARMAPG----GQAFIEFADQMQAGIALNALNGFKLSATNPLQLAFAR 250          
BLAST of mRNA_P-wetherbeei_contig6412.1.1 vs. uniprot
Match: A0A176VE80_MARPO (Uncharacterized protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A176VE80_MARPO)

HSP 1 Score: 211 bits (536), Expect = 5.920e-64
Identity = 118/238 (49.58%), Postives = 157/238 (65.97%), Query Frame = 2
Query:  257 AAAEPNNTIYIHNLNEKIKKPVLKKSLHSIFSQFGRIIDIVACRGEKLRGQAWVVFEDKAAATNAVKQMQGFPFYDKPMRIEFSKNESDVIARRRGTFVPREKRQKTEAAKGPKGPQQLGQEPAGAPPATSMGAAPTAVGGPGGPLAA------------PNSVLFAENLPAECTQGMLNLLFQQYRGLREVRMAAGQGGRGVAFVEFEDATLAGLALQGLAGFKLTQTDALQLSYAK 934
            A   PN TIYI+NLNEKIKK  LKKSL+++FSQFG+I+DIVAC+  KLRGQAWVVF+D  AATNA++QMQGFPFYDKPMRI+++K++SD +++  GTFV REKR+K +     K  +   + PA  PPA++                             PN++LFA+NLP E    M+ +LFQQ+ G +EVRM   + G  +AF+EF D   A +ALQ L  FK+T T+ +Q+SYAK
Sbjct:    3 ADTPPNQTIYINNLNEKIKKEELKKSLYAVFSQFGKILDIVACKTLKLRGQAWVVFDDVTAATNALRQMQGFPFYDKPMRIQYAKSKSDAVSKADGTFVSREKRKKNDEKAERKRREHQAEAPAAGPPASAYXXXXXXXXXXXXXXXXXXXXXXXXXXXPPNNILFAQNLPREANNLMIEMLFQQFPGFKEVRMIEAKPG--IAFIEFGDEMQASVALQALHNFKITPTNPMQISYAK 238          
BLAST of mRNA_P-wetherbeei_contig6412.1.1 vs. uniprot
Match: A0A1D1YL34_9ARAE (U2 small nuclear ribonucleoprotein B n=2 Tax=Araceae TaxID=4454 RepID=A0A1D1YL34_9ARAE)

HSP 1 Score: 210 bits (534), Expect = 9.800e-64
Identity = 121/227 (53.30%), Postives = 154/227 (67.84%), Query Frame = 2
Query:  269 PNNTIYIHNLNEKIKKPVLKKSLHSIFSQFGRIIDIVACRGEKLRGQAWVVFEDKAAATNAVKQMQGFPFYDKPMRIEFSKNESDVIARRRGTFVPREKRQKTEAAKGPKGPQQLGQEPAGA---PPATSMGAAPTAVGGPGGPLAA--PNSVLFAENLPAECTQGMLNLLFQQYRGLREVRMAAGQGGRGVAFVEFEDATLAGLALQGLAGFKLTQTDALQLSYAK 934
            PN TIYI NLNEK+KK  LK+SL+++FSQ+GRI+DIVA + EKLRGQAWVVF +  AA+ AV+QMQ FPFYDKPMRI+++K +SD IA+  GT+ PREKR+K E         +  Q    A   P A S GA+    G P    AA  PN++LF +NLP E T  ML +LFQQY G REVRM   + G  +AFVEFED   A +A+Q L GFK+T  + + ++YAK
Sbjct:    8 PNKTIYIKNLNEKVKKEELKRSLYALFSQYGRILDIVALKTEKLRGQAWVVFSEVTAASAAVRQMQNFPFYDKPMRIQYAKTKSDCIAKEEGTYTPREKRKKQEXXXXXXXXXEDAQRSGAASNGPSAQSNGASQAFHGKPSAQDAANAPNNILFIQNLPYETTSMMLQILFQQYPGFREVRMIEAKPG--IAFVEFEDDVQASIAMQSLQGFKITPQNPMAIAYAK 232          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6412.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
F0YDU7_AURAN3.300e-7357.89Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S2UV81_9STRA2.340e-7158.93Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6V1NUL1_HETAK2.340e-7057.33Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A8J2X4I1_9STRA7.440e-7055.04Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2DHN7_9STRA6.480e-6854.59Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S3NJ60_9STRA2.070e-6753.22Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A812Y221_SYMMI1.570e-6449.55Snrpb2 protein n=1 Tax=Symbiodinium microadriaticu... [more]
D7FNU9_ECTSI4.440e-6450.20RNA binding / nucleic acid binding n=2 Tax=Ectocar... [more]
A0A176VE80_MARPO5.920e-6449.58Uncharacterized protein n=2 Tax=Marchantia polymor... [more]
A0A1D1YL34_9ARAE9.800e-6453.30U2 small nuclear ribonucleoprotein B n=2 Tax=Arace... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6412contigP-wetherbeei_contig6412:884..2779 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog44056.XP_009038606.1
Preferred nameSNRPB2
PFAMsRRM_1
Model size937
Max annot lvl2759|Eukaryota
KEGG koko:K11091,ko:K11094
KEGG Pathwayko03040,map03040
KEGG ModuleM00351,M00352
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000245,GO:0000354,GO:0000375,GO:0000377,GO:0000381,GO:0000398,GO:0001650,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003727,GO:0003729,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005685,GO:0005686,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006325,GO:0006342,GO:0006355,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006996,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007530,GO:0007538,GO:0007539,GO:0007542,GO:0008150,GO:0008152,GO:0008187,GO:0008266,GO:0008380,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0015030,GO:0016043,GO:0016070,GO:0016071,GO:0016458,GO:0016604,GO:0016607,GO:0017069,GO:0018992,GO:0018993,GO:0019099,GO:0019219,GO:0019222,GO:0019953,GO:0022412,GO:0022414,GO:0022607,GO:0022613,GO:0022618,GO:0030154,GO:0030237,GO:0030532,GO:0030619,GO:0030620,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0034401,GO:0034622,GO:0034641,GO:0035613,GO:0035614,GO:0036002,GO:0040029,GO:0042802,GO:0043021,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043484,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044452,GO:0044464,GO:0044703,GO:0044877,GO:0045292,GO:0045814,GO:0045892,GO:0045934,GO:0046483,GO:0048024,GO:0048468,GO:0048477,GO:0048519,GO:0048523,GO:0048609,GO:0048856,GO:0048869,GO:0050684,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051276,GO:0051704,GO:0060255,GO:0065003,GO:0065007,GO:0070013,GO:0070828,GO:0070868,GO:0070990,GO:0071004,GO:0071005,GO:0071007,GO:0071010,GO:0071011,GO:0071013,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0097157,GO:0097158,GO:0097159,GO:0097525,GO:0097549,GO:0120114,GO:1901360,GO:1901363,GO:1902494,GO:1902679,GO:1903311,GO:1903506,GO:1903507,GO:1990904,GO:2000112,GO:2000113,GO:2001141
Exons4
Evalue2.8e-75
EggNOG OGsKOG4206@1|root,KOG4206@2759|Eukaryota
Ec32 ortholog descriptionNucleotide-binding alpha-beta plait domain
Ec32 orthologEc-12_003280.1
DescriptionsnRNA stem-loop binding
Cds size684
COG categoryJ
BRITEko00000,ko00001,ko00002,ko03041
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186911.6368186-UTR-P-wetherbeei_contig6412:883..9701683186911.6368186-UTR-P-wetherbeei_contig6412:883..970Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6412 884..970 +
1683186911.6530805-UTR-P-wetherbeei_contig6412:1415..15811683186911.6530805-UTR-P-wetherbeei_contig6412:1415..1581Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6412 1416..1581 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186911.6632564-CDS-P-wetherbeei_contig6412:1581..18651683186911.6632564-CDS-P-wetherbeei_contig6412:1581..1865Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6412 1582..1865 +
1683186911.6736877-CDS-P-wetherbeei_contig6412:2017..21631683186911.6736877-CDS-P-wetherbeei_contig6412:2017..2163Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6412 2018..2163 +
1683186911.6845946-CDS-P-wetherbeei_contig6412:2525..27791683186911.6845946-CDS-P-wetherbeei_contig6412:2525..2779Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6412 2526..2779 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6412.1.1prot_P-wetherbeei_contig6412.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6412 1582..2779 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6412.1.1

>prot_P-wetherbeei_contig6412.1.1 ID=prot_P-wetherbeei_contig6412.1.1|Name=mRNA_P-wetherbeei_contig6412.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=228bp
MAAAEPNNTIYIHNLNEKIKKPVLKKSLHSIFSQFGRIIDIVACRGEKLR
GQAWVVFEDKAAATNAVKQMQGFPFYDKPMRIEFSKNESDVIARRRGTFV
PREKRQKTEAAKGPKGPQQLGQEPAGAPPATSMGAAPTAVGGPGGPLAAP
NSVLFAENLPAECTQGMLNLLFQQYRGLREVRMAAGQGGRGVAFVEFEDA
TLAGLALQGLAGFKLTQTDALQLSYAK*
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mRNA from alignment at P-wetherbeei_contig6412:884..2779+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6412.1.1 ID=mRNA_P-wetherbeei_contig6412.1.1|Name=mRNA_P-wetherbeei_contig6412.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1896bp|location=Sequence derived from alignment at P-wetherbeei_contig6412:884..2779+ (Phaeothamnion wetherbeei SAG_119_79)
GACCTCGACCTGCTGGCCGTCGACTGCCCCGTCGTGCTTGACGTCGCGGG CAAGGACCCGTTTGCTGGGTTTTGAACAACGTGCATGGTAAGTGGGAGAA AAACAGAGAGGAAGAGTGCTAGGAGTTTGTGAGTTGCCGCGACAACGCCG AGAGGCGACGAGAAGGGGCTGCGAGTTGTTATTCGGCCGTAGATACGGCC TGTACTTCGAGAAGGTGAAGAGAGATGCGATCGTGGTGGGGATCGACTGT ATCAGACGCAAATTTGAGGCGTTTCCTCCTCTTCTCTTCTCCGCGGGGCC ATAGCTACTGTGGCAGCCTAGTGTCGACCATCCATTCGCCGCTGCTGAGA CAACACTCGTGCTGCTACCAGTCCGAAGCTGGCAGCGGTATCACCGGCAA CGGCGGCGCTCTGAGCGGTAGTTGCTCCGTTGCGGGCGCCACCTGCCGGT GCAGCGGTCGCCGCCACCGTGGCACCGCTTCGCTTAACGGCTCTCCAACT TCTCCTCTCCTTCGCTTTTCTTGATTCCGTAGGCGCTTCCATCACTGCTC CGTCACGCGATAAAAAGGGAGGGAGGAGAGGAGAGCCTCTTAGACGACGT GCTACGCAGCCATCTTGCAATCTCAGCCACCGACGTGTCTGTGCCATCTT TGCGCTTAGTGGTTCTAGTTTCTGGACCAAACGAGAAGTGCGAGTGAGAT GGCTGCTGCCGAGCCAAATAACACCATCTATATCCACAACCTCAACGAAA AGATCAAGAAGCCTGTCCTGAAGAAGAGCCTGCACAGTATCTTCAGCCAG TTCGGCCGAATCATCGACATTGTGGCATGCCGAGGGGAGAAGCTGCGAGG ACAGGCGTGGGTCGTCTTTGAGGACAAGGCGGCCGCCACCAATGCGGTCA AGCAGATGCAGGGCTTTCCCTTCTACGACAAGCCCATGCGAATAGAGTTC TCAAAGAACGAGAGCGACGTCATCGCACGCAGGTCTGCATTGCTCTACCG CGTAAATCTCTCCTCTTTCTTGCGGCATCGCTTTGCTTTTCGTTAATGCA TTATGTTTAAAGCACTGCTAGCACTCTTGTTCACCAAGCCACGGCATCTT AACCACTATGCTTTACTCGCTCCTGCACTGCCAGGCGCGGCACGTTCGTG CCACGGGAAAAGCGCCAAAAAACGGAGGCAGCGAAGGGGCCGAAGGGACC GCAGCAGCTAGGGCAGGAGCCCGCGGGAGCACCACCGGCGACGTCAATGG GTGCGGCGCCGACGGCGGTGGGAGGGCCCGGTGAGTCTTATGTCTCTGAT GCGACGTCCTTCTTGTACGGATTTTCTTTTCCTCTTGGCGCCTTTTTTGC ATTGTTGTCATGAATGCTGGAAGTGAGAGTGACTTTGATCCTCTCCTATT TGTGAAAGACGTGTATCGGTTGGGTATTGGTACTTCCTGGCTGAACAGCG ATTCGACGCAGAGCGAAGACACAGGCATTTATTTGATGTGCAGCTGAAAT GGGTAGATTTAGTGCCGCCTAACTGCGTCATATTCTTGGAGCTGTACTCG ATGAAACCTGACGTCATACTTTCTCATTCTCCCCTTCCTTCCCTCTCATT TCTCTTGCCGTTGCCCCTATCCTCTCCTCCATGCCGTGGCAGGAGGGCCG CTGGCGGCGCCGAACAGCGTGCTCTTCGCCGAAAATCTGCCGGCGGAATG CACGCAGGGCATGCTAAACCTGCTCTTCCAGCAGTACCGCGGCCTGCGCG AGGTGCGCATGGCGGCCGGGCAGGGCGGGCGCGGTGTCGCCTTCGTTGAG TTCGAGGACGCCACACTGGCCGGCCTGGCGCTGCAGGGGCTGGCGGGTTT CAAGCTGACGCAGACAGATGCGCTGCAACTGAGCTATGCCAAATGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6412:884..2779+

>mRNA_P-wetherbeei_contig6412.1.1 ID=mRNA_P-wetherbeei_contig6412.1.1|Name=mRNA_P-wetherbeei_contig6412.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=684bp|location=Sequence derived from alignment at P-wetherbeei_contig6412:884..2779+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCTGCTGCCGAGCCAAATAACACCATCTATATCCACAACCTCAACGA
AAAGATCAAGAAGCCTGTCCTGAAGAAGAGCCTGCACAGTATCTTCAGCC
AGTTCGGCCGAATCATCGACATTGTGGCATGCCGAGGGGAGAAGCTGCGA
GGACAGGCGTGGGTCGTCTTTGAGGACAAGGCGGCCGCCACCAATGCGGT
CAAGCAGATGCAGGGCTTTCCCTTCTACGACAAGCCCATGCGAATAGAGT
TCTCAAAGAACGAGAGCGACGTCATCGCACGCAGGCGCGGCACGTTCGTG
CCACGGGAAAAGCGCCAAAAAACGGAGGCAGCGAAGGGGCCGAAGGGACC
GCAGCAGCTAGGGCAGGAGCCCGCGGGAGCACCACCGGCGACGTCAATGG
GTGCGGCGCCGACGGCGGTGGGAGGGCCCGGAGGGCCGCTGGCGGCGCCG
AACAGCGTGCTCTTCGCCGAAAATCTGCCGGCGGAATGCACGCAGGGCAT
GCTAAACCTGCTCTTCCAGCAGTACCGCGGCCTGCGCGAGGTGCGCATGG
CGGCCGGGCAGGGCGGGCGCGGTGTCGCCTTCGTTGAGTTCGAGGACGCC
ACACTGGCCGGCCTGGCGCTGCAGGGGCTGGCGGGTTTCAAGCTGACGCA
GACAGATGCGCTGCAACTGAGCTATGCCAAATGA
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