mRNA_P-wetherbeei_contig6411.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6411.2.1
Unique NamemRNA_P-wetherbeei_contig6411.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6411.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6411contigP-wetherbeei_contig6411:1742..3345 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size973
Hectar predicted targeting categoryother localisation
Exons2
Cds size510
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186911.5700674-UTR-P-wetherbeei_contig6411:1741..17681683186911.5700674-UTR-P-wetherbeei_contig6411:1741..1768Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6411 1742..1768 +
1683186911.5845177-UTR-P-wetherbeei_contig6411:2399..24531683186911.5845177-UTR-P-wetherbeei_contig6411:2399..2453Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6411 2400..2453 +
1683186911.607152-UTR-P-wetherbeei_contig6411:2963..33451683186911.607152-UTR-P-wetherbeei_contig6411:2963..3345Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6411 2964..3345 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186911.596889-CDS-P-wetherbeei_contig6411:2453..29631683186911.596889-CDS-P-wetherbeei_contig6411:2453..2963Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6411 2454..2963 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6411.2.1prot_P-wetherbeei_contig6411.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6411 2454..2963 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6411.2.1

>prot_P-wetherbeei_contig6411.2.1 ID=prot_P-wetherbeei_contig6411.2.1|Name=mRNA_P-wetherbeei_contig6411.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=170bp
MHGWSTCCGCRGRRWRCCTAITGCWAGLGIRVGPTGPSGPSSASAASCAT
LPTQPRRRRRADRPRWQRRQLRRWRPALPAAVPGTSGRAWGEAGRRHPLT
NSRDTTASCRRRRRRLRWRPWRPGHTGACLHPARVHGADRGTARAVAGSS
ARSPAAVSRAGRGLSQNAS*
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mRNA from alignment at P-wetherbeei_contig6411:1742..3345+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6411.2.1 ID=mRNA_P-wetherbeei_contig6411.2.1|Name=mRNA_P-wetherbeei_contig6411.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1604bp|location=Sequence derived from alignment at P-wetherbeei_contig6411:1742..3345+ (Phaeothamnion wetherbeei SAG_119_79)
CAGCTGCGGGAGCCGAGCCTGATCCAGGTGGGTGGGGTTGGGGCGGCGCG
CAGATTTACAGGAGAAAGCATGCGCTTAGTTGCTCGCTTGCAGAGGTCAC
AACTTGGTTCCGTCTATCACTTTAGGCGATTTGCGAGCCGAAGGTGGGAC
CTTGAGCTGCTCATTGGAGCGGAGAGGGCGGCCGTCAAGAAGCTGCTGGC
TTGGAGGAGCTGCAGCAGCTGATGGAGGAGAGCTGCCTCGAAAAGCCCGA
GGCTGCCGAGCTGCGGAGATAGGCCGCGCGGCCAGTCAACCCCGGGGGAG
CCGGGGGATGGCGGCAGCGGCGGCGGTGTTGCTCCAGGCGCGCTTGGACG
CTGTACGGGCAGCGGTCATATCGCCAATGTCGGGGTTACCGGACGAGCTT
TTGCCTCGTTTTGTCTTGCCCTTCTTTTCGGAGGTCGGTCCTCCGCCTAT
CATTCCTAATCCGCTTGTTGTTTGTTTTGTATTGTTCCTTTTCTCCCCTG
TGTGTGCTCCGCTGCGGTTGTTAAGGGAATGTGACGACTGATCCCTGGTG
TCGGAGAAGAGCATCCTCTTTGCGTCCGGCCCGATATCCGACCTTGCCTT
ATTCCGGGCAAAATTCATCCCTTTACCTCACGCTGTTTTTCCCGTTTTTT
CGCTGCAGGCAAGTGGGCGGGGGGGGGAGGGGTTCAAGCGAACGGCGACC
CGCTTCCGCGAGATGCACGGCTGGAGCACGTGCTGCGGGTGCCGCGGCAG
GAGGTGGCGCTGCTGTACGGCGATCACGGGCTGCTGGGCTGGACTGGGCA
TCCGAGTGGGACCGACCGGCCCGAGCGGACCGTCCAGCGCCTCAGCCGCC
TCGTGTGCGACATTGCCAACCCAACCCCGCCGACGTCGGCGTGCCGACAG
ACCGCGGTGGCAGCGGCGGCAGTTGCGGCGGTGGCGGCCAGCTTTGCCGG
CAGCGGTGCCGGGAACTTCAGGGCGGGCGTGGGGGGAGGCTGGACGGCGC
CATCCCCTTACCAACAGCCGGGATACTACGGCAAGCTGCCGCCGGCGGCG
GCGGCGGCTTCGATGGCGGCCCTGGCGGCCAGGTCATACGGGGGCATGTT
TGCATCCGGCGCGAGTTCATGGGGCGGACCGGGGCACGGCGAGGGCGGTA
GCAGGGTCGAGTGCCCGAAGCCCCGCCGCCGTTAGCCGGGCAGGACGGGG
GCTCAGTCAGAACGCCTCGTGAAGTGGCGGTGGCGGGTGGTGCTTACGGC
GGATTCCGGGCTGTGGGGCCAGCGATACCGGCAGTGGCGGCGCTGGACAG
ATCTGCGTCCAGATGGTGCACTCGCAGGACCGCCAGCACCGTCGCGCCTT
CGGTGGCTGCCGCCGCCTGTCCACCCACCGGAGCACGCACAGCCGCACAG
GGAAGGGCATTGCAGGCAGCAACCATTTGTCCATCAGTCCGAGCTTAGCC
CCTCTTCTTCTCTTTCACCAGCGAAGAAAACGTTGGCATCGCTCAAACGC
GAGATCTTTTCACGTAAAAGAAAGGGGCAGTTATTGTTTCGGAAAACAGA
AGAGAATCGGCAGGAGATAAGCTTTTTAAAGAGGTCTATGAGACTTTGCG
TGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6411:1742..3345+

>mRNA_P-wetherbeei_contig6411.2.1 ID=mRNA_P-wetherbeei_contig6411.2.1|Name=mRNA_P-wetherbeei_contig6411.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=510bp|location=Sequence derived from alignment at P-wetherbeei_contig6411:1742..3345+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCACGGCTGGAGCACGTGCTGCGGGTGCCGCGGCAGGAGGTGGCGCTG
CTGTACGGCGATCACGGGCTGCTGGGCTGGACTGGGCATCCGAGTGGGAC
CGACCGGCCCGAGCGGACCGTCCAGCGCCTCAGCCGCCTCGTGTGCGACA
TTGCCAACCCAACCCCGCCGACGTCGGCGTGCCGACAGACCGCGGTGGCA
GCGGCGGCAGTTGCGGCGGTGGCGGCCAGCTTTGCCGGCAGCGGTGCCGG
GAACTTCAGGGCGGGCGTGGGGGGAGGCTGGACGGCGCCATCCCCTTACC
AACAGCCGGGATACTACGGCAAGCTGCCGCCGGCGGCGGCGGCGGCTTCG
ATGGCGGCCCTGGCGGCCAGGTCATACGGGGGCATGTTTGCATCCGGCGC
GAGTTCATGGGGCGGACCGGGGCACGGCGAGGGCGGTAGCAGGGTCGAGT
GCCCGAAGCCCCGCCGCCGTTAGCCGGGCAGGACGGGGGCTCAGTCAGAA
CGCCTCGTGA
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