mRNA_P-wetherbeei_contig641.2.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig641.2.2
Unique NamemRNA_P-wetherbeei_contig641.2.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig641.2.2 vs. uniprot
Match: A0A835YM08_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YM08_9STRA)

HSP 1 Score: 268 bits (686), Expect = 1.680e-84
Identity = 138/247 (55.87%), Postives = 175/247 (70.85%), Query Frame = 3
Query:  186 RWGLTGQTALVTGGTKGIGKAITTELATLGARVLICARSEEGLEEAQREWKSAGLEIHAVKADVGISEERSALLAKANDLFAGNLSILVNNVGNNVKRKTVDYTDGEFHEMMNINFGSVYQLTRAAHPLLKSA-GHSSVVNISSVAGVAAISSESAYAAAKASLNHMTSYLGCEWAKDGIRVNAICPWFTNTPLVAPVLRDAATMAGVLRRTPLGRIAQPEEVSALAAFLCMQPASYVTAQVICVDG 923
            RW L GQ ALVTGGTKGIG AI  ELA LGA V  CARS+  L++   EW++ GL++H   ADV  +E+R+ALL K  + F G+L ILVNNVG +++R TVDYT  E   ++ +NF S + + +  HPLLK A G  SVVNI SVAGV +I S + YAA+KA+++ +T    CEWA DGIRVN + PW+TNTPL +PV  D    A +L RTP+ RIA+ EEVSAL AFLCM+ ASY+T QV+CVDG
Sbjct:    4 RWRLDGQKALVTGGTKGIGNAIVVELAHLGAEVYTCARSDADLQQCLAEWRAQGLKVHGSVADVSSAEDRAALLQKVGEAFGGSLDILVNNVGTSIRRATVDYTSEEAEHVLRVNFHSCFAMMQLCHPLLKEAQGGGSVVNIGSVAGVTSIKSGTPYAASKAAMHKVTQNCACEWAGDGIRVNCVAPWYTNTPLASPVFEDKIKYAEILSRTPMKRIAEAEEVSALVAFLCMRGASYITGQVVCVDG 250          
BLAST of mRNA_P-wetherbeei_contig641.2.2 vs. uniprot
Match: UPI0002C34EFE (tropinone reductase homolog n=1 Tax=Fragaria vesca subsp. vesca TaxID=101020 RepID=UPI0002C34EFE)

HSP 1 Score: 256 bits (653), Expect = 2.190e-79
Identity = 129/251 (51.39%), Postives = 171/251 (68.13%), Query Frame = 3
Query:  171 DMAAERWGLTGQTALVTGGTKGIGKAITTELATLGARVLICARSEEGLEEAQREWKSAGLEIHAVKADVGISEERSALLAKANDLFAGNLSILVNNVGNNVKRKTVDYTDGEFHEMMNINFGSVYQLTRAAHPLLKSAGHSSVVNISSVAGVAAISSESAYAAAKASLNHMTSYLGCEWAKDGIRVNAICPWFTNTPLVAPVLRDAATMAGVLRRTPLGRIAQPEEVSALAAFLCMQPASYVTAQVICVDG 923
            ++A  RW LTG TALVTGGT+GIG A+  ELA+LGA V  C+R+ E LE   +EW + G  I  +  DV +  ER  L+ +    FAG L+I VNNVG N+++ T +YT  E+ ++M+ N  S Y L + AHPLLK +G  SVV ISSVAG+ ++ S + YAA+KA++N +T  L CEWAKD IR NA+ PW+T T LV  +L D   +  V  RTPL R+A+PEEVS+L AFLC+  ASY+T Q+ICVDG
Sbjct:    7 NLATPRWSLTGTTALVTGGTRGIGYAVVEELASLGAYVFTCSRNAEELERCLKEWSAKGFRITGIVCDVSVKSEREKLMEQVGVSFAGRLNIFVNNVGTNIRKPTTEYTFEEYSKVMSTNLESTYHLCQIAHPLLKGSGAGSVVFISSVAGLVSLGSGTIYAASKAAINQLTKNLACEWAKDNIRSNAVAPWYTRTSLVEHMLEDKKFLEEVTSRTPLNRVAEPEEVSSLVAFLCLPAASYITGQIICVDG 257          
BLAST of mRNA_P-wetherbeei_contig641.2.2 vs. uniprot
Match: A0A2I0B5Q5_9ASPA (Tropinone reductase like n=1 Tax=Apostasia shenzhenica TaxID=1088818 RepID=A0A2I0B5Q5_9ASPA)

HSP 1 Score: 254 bits (648), Expect = 1.310e-78
Identity = 125/248 (50.40%), Postives = 173/248 (69.76%), Query Frame = 3
Query:  180 AERWGLTGQTALVTGGTKGIGKAITTELATLGARVLICARSEEGLEEAQREWKSAGLEIHAVKADVGISEERSALLAKANDLFAGNLSILVNNVGNNVKRKTVDYTDGEFHEMMNINFGSVYQLTRAAHPLLKSAGHSSVVNISSVAGVAAISSESAYAAAKASLNHMTSYLGCEWAKDGIRVNAICPWFTNTPLVAPVLRDAATMAGVLRRTPLGRIAQPEEVSALAAFLCMQPASYVTAQVICVDG 923
            A RW L G TALVTGGT+GIG A+  ELA LGA V  C+R E  L +  ++W+  G  +    +D+ + E+R  L+ K +  F G L+IL+NNVG+N+++ T+DY++ ++  +MN NF S + +++ AHPLLK++G  S+V ISSVAGV AI S + YAA KA+LN +T  L CEWAKD IRVN++ PW+  T LV  +L +   + GVL RTPL R+ +PEEVS+L AFLC+  ASY+TAQ+I VDG
Sbjct:   12 AGRWSLDGMTALVTGGTRGIGNAVVEELAALGATVYTCSRKESELNDCLKKWEGLGYRVSGSVSDLSVREQREDLIQKVSSTFCGKLNILINNVGSNIRKHTIDYSEEDYSFIMNTNFESAFHISQLAHPLLKASGKGSIVFISSVAGVVAIGSGTIYAATKAALNQITKNLACEWAKDNIRVNSVSPWYIKTSLVDQLLENQNFIEGVLSRTPLNRVGEPEEVSSLVAFLCLPSASYITAQIISVDG 259          
BLAST of mRNA_P-wetherbeei_contig641.2.2 vs. uniprot
Match: A0A0C9S3L1_9SPER (TSA: Wollemia nobilis Ref_Wollemi_Transcript_28761_1323 transcribed RNA sequence n=1 Tax=Wollemia nobilis TaxID=56998 RepID=A0A0C9S3L1_9SPER)

HSP 1 Score: 251 bits (642), Expect = 8.890e-78
Identity = 128/247 (51.82%), Postives = 167/247 (67.61%), Query Frame = 3
Query:  183 ERWGLTGQTALVTGGTKGIGKAITTELATLGARVLICARSEEGLEEAQREWKSAGLEIHAVKADVGISEERSALLAKANDLFAGNLSILVNNVGNNVKRKTVDYTDGEFHEMMNINFGSVYQLTRAAHPLLKSAGHSSVVNISSVAGVAAISSESAYAAAKASLNHMTSYLGCEWAKDGIRVNAICPWFTNTPLVAPVLRDAATMAGVLRRTPLGRIAQPEEVSALAAFLCMQPASYVTAQVICVDG 923
            +RW L G TALVTGGTKGIGKA+  ELA  GA V  CAR+E+ L E    WK+AGL +     D+ +   R  L+ K +    G L+IL+NNVG N +R T++YT  +F   M+ NF S Y L + +HPLLK++G  S+V ISSVAGV AI S + YAA+K ++N +   L CEWA+D IRVN++ PW+T TPLV  +L D   +  VL RTPL R+A+P+EVS+L AFLC+  ASY+T QVI VDG
Sbjct:   12 QRWSLQGMTALVTGGTKGIGKAVVEELAGFGATVYTCARNEKDLNECLTAWKAAGLNVEGSNCDLSLRSAREELIEKVSSFCNGKLNILINNVGTNKRRPTLEYTAEDFSFYMSTNFESAYHLCQLSHPLLKASGSGSIVFISSVAGVVAIQSGTLYAASKGAMNQIAKNLACEWARDNIRVNSVAPWYTKTPLVKKLLEDEEFVKNVLERTPLDRLAEPQEVSSLVAFLCLPAASYITGQVISVDG 258          
BLAST of mRNA_P-wetherbeei_contig641.2.2 vs. uniprot
Match: UPI0018AE84AF (tropinone reductase homolog At5g06060-like n=1 Tax=Dioscorea cayennensis subsp. rotundata TaxID=55577 RepID=UPI0018AE84AF)

HSP 1 Score: 249 bits (635), Expect = 1.210e-76
Identity = 128/248 (51.61%), Postives = 168/248 (67.74%), Query Frame = 3
Query:  180 AERWGLTGQTALVTGGTKGIGKAITTELATLGARVLICARSEEGLEEAQREWKSAGLEIHAVKADVGISEERSALLAKANDLFAGNLSILVNNVGNNVKRKTVDYTDGEFHEMMNINFGSVYQLTRAAHPLLKSAGHSSVVNISSVAGVAAISSESAYAAAKASLNHMTSYLGCEWAKDGIRVNAICPWFTNTPLVAPVLRDAATMAGVLRRTPLGRIAQPEEVSALAAFLCMQPASYVTAQVICVDG 923
            +ERW L G TALVTGGT+GIG A+  ELA LGA V  C+R+E  L +  +EW++ GL +     D+   E+R  L+ K + +F G L+IL+NN G N+++ T DYT  EF  +MN NF SVY L + AHPLLK++G  S+V ISSVAGV AISS S YAA KA++N +   L CEWAKD IR NAI PW+  T L  PVL    T   ++ RTPL R+ +P+EVS++ AFLC+  ASY++ Q+I VDG
Sbjct:   16 SERWSLRGMTALVTGGTRGIGHAVVEELAGLGATVYTCSRNEAELNDRLKEWEALGLRVTGSVCDLASREQRVELIQKVSSVFDGKLNILINNAGTNIRKPTSDYTSEEFSFLMNTNFESVYHLCQLAHPLLKASGAGSIVLISSVAGVVAISSGSVYAATKAAMNQLARNLACEWAKDNIRTNAIAPWYIKTSLTEPVLNQELTQK-IVARTPLRRVGEPDEVSSIVAFLCLPSASYISGQIISVDG 262          
BLAST of mRNA_P-wetherbeei_contig641.2.2 vs. uniprot
Match: I0Z9N4_COCSC (NAD(P)-binding protein n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0Z9N4_COCSC)

HSP 1 Score: 247 bits (631), Expect = 3.380e-76
Identity = 129/247 (52.23%), Postives = 170/247 (68.83%), Query Frame = 3
Query:  186 RWGLTGQTALVTGGTKGIGKAITTELATLGARVLICARSEEGLEEAQREWKSAGLEIHAVKADVGISEERSALLAKANDLFAGNLSILVNNVGNNVKRKTVDYTDGEFHEMMNINFGSVYQLTRAAHPLLKSAGHSSVVNISSVAG-VAAISSESAYAAAKASLNHMTSYLGCEWAKDGIRVNAICPWFTNTPLVAPVLRDAATMAGVLRRTPLGRIAQPEEVSALAAFLCMQPASYVTAQVICVDG 923
            R+GL GQ ALVTGGTKGIGKAI  ELA+LGA VL CAR+   +E+A R W+  G +   V+AD+  ++ R  L+   N+LF G+L ILVNNVG NV++ TV+Y+  +F  +   N  S Y LT+ AHPLLK+AG SSV+ +SSVAG    + S + YA  KA+++ ++  L CEWA DGIR+N++ PW+ +TPL APV+ D   +A V  RTP+ R+ QPEEVS L AFLC   ASY+T Q I VDG
Sbjct:   11 RFGLQGQKALVTGGTKGIGKAIVEELASLGAEVLTCARNASDIEQATRAWQDKGWKAQGVQADLSSADGRQKLIEDVNNLFGGSLHILVNNVGCNVRKPTVEYSSDDFSYITKTNLESAYNLTQLAHPLLKAAGRSSVIMMSSVAGGPTTVQSGTIYAMTKAAMDQLSRNLSCEWASDGIRINSVKPWYIDTPLAAPVINDPVKLAEVESRTPMKRVGQPEEVSGLVAFLCSPAASYITGQCIAVDG 257          
BLAST of mRNA_P-wetherbeei_contig641.2.2 vs. uniprot
Match: D7FL76_ECTSI (Tropinone reductase, putative / tropine dehydrogenase, putative n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FL76_ECTSI)

HSP 1 Score: 247 bits (630), Expect = 1.930e-75
Identity = 132/255 (51.76%), Postives = 170/255 (66.67%), Query Frame = 3
Query:  186 RWGLTGQTALVTGGTKGIGKAITTELATLGARVLICARSEEGLEEAQREWKSAGLEIHAVKADVGISEERSALLAKANDLFAGNLSILVNNVGNNVKRKTVDYTDGEFHEMMNINFGSVYQLTRAAHPLLKSA---------GHSSVVNISSVAGVAAISSESAYAAAKASLNHMTSYLGCEWAKDGIRVNAICPWFTNTPLVAPVLRDAATMAGVLRRTPLGRIAQPEEVSALAAFLCMQPASYVTAQVICVDG 923
            RW L G+TA+VTGGTKGIGKAI  ELA LGA+V+ C+R+   +     EWKS GL +    ADV  +E R +L+  A + F G L ILVNNVG N+++ TVDYT  E   +M+ NF S++ LT+  HPLLK+A         G SSV+NISSVAG+  I S S YAA+KA++N +T   GCEWA DGIRVNA+ PW+T TPL  PV  D   +  + +RTP+ R A  +EVS + AFLCM+ A Y+T+QVI  DG
Sbjct:   44 RWSLEGKTAVVTGGTKGIGKAIVEELACLGAKVITCSRNPADVAACLEEWKSKGLLVEGTAADVTTAEGRESLVKLAEEHFGGLLDILVNNVGTNIRKATVDYTPEELAYVMDTNFTSLFLLTKLLHPLLKAAAAVKGSRENGGSSVINISSVAGITPIKSGSPYAASKAAMNQVTRLWGCEWAPDGIRVNAVAPWYTKTPLTEPVQADPVRVNEITQRTPMKRWADADEVSGMVAFLCMKGAGYITSQVIATDG 298          
BLAST of mRNA_P-wetherbeei_contig641.2.2 vs. uniprot
Match: A0A059AFL7_EUCGR (Uncharacterized protein n=9 Tax=Eucalyptus grandis TaxID=71139 RepID=A0A059AFL7_EUCGR)

HSP 1 Score: 245 bits (626), Expect = 3.170e-75
Identity = 126/246 (51.22%), Postives = 161/246 (65.45%), Query Frame = 3
Query:  186 RWGLTGQTALVTGGTKGIGKAITTELATLGARVLICARSEEGLEEAQREWKSAGLEIHAVKADVGISEERSALLAKANDLFAGNLSILVNNVGNNVKRKTVDYTDGEFHEMMNINFGSVYQLTRAAHPLLKSAGHSSVVNISSVAGVAAISSESAYAAAKASLNHMTSYLGCEWAKDGIRVNAICPWFTNTPLVAPVLRDAATMAGVLRRTPLGRIAQPEEVSALAAFLCMQPASYVTAQVICVDG 923
            RW L G TALVTGGTKGIG AI  ELA LGA V  C+R+E  + E  ++WKS G  +     DV    ER  L+   + +F G L+IL+NNVG N  + T+DYT  +F  +M  NF S Y L++ AHPLLK++G  S+V +SSV GV +I+  S Y+A K ++N +T  L CEWAKD IR N++ PWF  TPL  P+L D      V+ RTPLGR  +PEEVS+L AFLC+  ASY+T Q ICVDG
Sbjct:   22 RWSLHGMTALVTGGTKGIGHAIVEELARLGATVHTCSRNEAEINECLKDWKSKGFRVSGSTCDVSSRSEREKLMLTVSSVFDGKLNILINNVGTNTLKSTMDYTAEDFSFIMTTNFESAYHLSQLAHPLLKASGAGSIVFLSSVCGVVSINVGSIYSATKGAMNQLTKNLACEWAKDNIRSNSVAPWFILTPLAEPLLSDKKFHEEVIARTPLGRTGEPEEVSSLVAFLCLPAASYITGQTICVDG 267          
BLAST of mRNA_P-wetherbeei_contig641.2.2 vs. uniprot
Match: D7FL79_ECTSI (Tropinone reductase, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL79_ECTSI)

HSP 1 Score: 245 bits (625), Expect = 3.360e-75
Identity = 135/256 (52.73%), Postives = 173/256 (67.58%), Query Frame = 3
Query:  186 RWGLTGQTALVTGGTKGIGKAITTELATLGARVLICARSEEGLEEAQREWKSAGLEIHAVKADVGISEERSALLAKANDLFAGNLSILVNNVGNNVKRK-TVDYTDGEFHEMMNINFGSVYQLTRAAHPLLKSA---------GHSSVVNISSVAGVAAISSESAYAAAKASLNHMTSYLGCEWAKDGIRVNAICPWFTNTPLVAPVLRDAATMAGVLRRTPLGRIAQPEEVSALAAFLCMQPASYVTAQVICVDG 923
            +W L G+TALVTGGTKGIGKAI  ELA LGA+VL C+R+E+G+     EW++ GLE+H +  DV  +E R  L + A + F G L ILVNNVG ++++  T D+T  EF  ++N NF +V  LT+  HPLLK+A         G SSVVNISS+AGV A+ + +AYAA+KA++N +T   GCEWAKDGIRVNA+ P  TNTP    V R    M     R P+GR A P E+S   AFLCM+ ASY+T+QVICVDG
Sbjct:   11 QWSLEGRTALVTGGTKGIGKAIVEELACLGAKVLTCSRTEDGVIACITEWRAKGLEVHGIAVDVTTAEGRQELFSAAEEHFDGALDILVNNVGRSIRKSSTFDFTPEEFETIINTNFSTVLSLTKLFHPLLKAAAAAEGARDKGGSSVVNISSIAGVTAVKTGAAYAASKAAINRLTINWGCEWAKDGIRVNAVAPGATNTPSTESVPRSTELMD----RIPMGRWADPHEISGQVAFLCMKGASYITSQVICVDG 262          
BLAST of mRNA_P-wetherbeei_contig641.2.2 vs. uniprot
Match: W1NZZ4_AMBTC (Uncharacterized protein n=1 Tax=Amborella trichopoda TaxID=13333 RepID=W1NZZ4_AMBTC)

HSP 1 Score: 244 bits (624), Expect = 4.740e-75
Identity = 123/247 (49.80%), Postives = 162/247 (65.59%), Query Frame = 3
Query:  183 ERWGLTGQTALVTGGTKGIGKAITTELATLGARVLICARSEEGLEEAQREWKSAGLEIHAVKADVGISEERSALLAKANDLFAGNLSILVNNVGNNVKRKTVDYTDGEFHEMMNINFGSVYQLTRAAHPLLKSAGHSSVVNISSVAGVAAISSESAYAAAKASLNHMTSYLGCEWAKDGIRVNAICPWFTNTPLVAPVLRDAATMAGVLRRTPLGRIAQPEEVSALAAFLCMQPASYVTAQVICVDG 923
            ERW L G TALVTGGTKGIG A   E+A+LGA V  C+R+E+ L +   EWK  GL+ H    D+    +R  L+   +  F G L+ILVNNVG N+++ T+ YT  EF  +M  N  S Y + +  HPLLK++G  S+V ISSVAGV A+ + + YAA K +LN +T  L CEWAKD IR N++ PWF  TPLV   L+      G++ RTP+ R+ +PEEVS+L AFLC+  ASY+T Q+ICVDG
Sbjct:   15 ERWSLNGMTALVTGGTKGIGHATVEEIASLGASVYTCSRNEDDLNKCLNEWKGMGLDAHGSVCDLSSRPDREKLIDAVSSHFKGKLNILVNNVGTNIRKPTMQYTAAEFSFLMATNLESAYHMCQLTHPLLKASGVGSIVFISSVAGVVALHTGTIYAATKGALNQITKNLACEWAKDNIRTNSVAPWFIKTPLVEDFLQVKGITEGIIARTPMRRMGEPEEVSSLVAFLCLPAASYITGQIICVDG 261          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig641.2.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YM08_9STRA1.680e-8455.87Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
UPI0002C34EFE2.190e-7951.39tropinone reductase homolog n=1 Tax=Fragaria vesca... [more]
A0A2I0B5Q5_9ASPA1.310e-7850.40Tropinone reductase like n=1 Tax=Apostasia shenzhe... [more]
A0A0C9S3L1_9SPER8.890e-7851.82TSA: Wollemia nobilis Ref_Wollemi_Transcript_28761... [more]
UPI0018AE84AF1.210e-7651.61tropinone reductase homolog At5g06060-like n=1 Tax... [more]
I0Z9N4_COCSC3.380e-7652.23NAD(P)-binding protein n=1 Tax=Coccomyxa subellips... [more]
D7FL76_ECTSI1.930e-7551.76Tropinone reductase, putative / tropine dehydrogen... [more]
A0A059AFL7_EUCGR3.170e-7551.22Uncharacterized protein n=9 Tax=Eucalyptus grandis... [more]
D7FL79_ECTSI3.360e-7552.73Tropinone reductase, putative n=1 Tax=Ectocarpus s... [more]
W1NZZ4_AMBTC4.740e-7549.80Uncharacterized protein n=1 Tax=Amborella trichopo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig641contigP-wetherbeei_contig641:1301..3115 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog57918.XP_004307471.1
PFAMsadh_short,adh_short_C2
Model size1321
Max annot lvl35493|Streptophyta
KEGG rclassRC00144
KEGG koko:K08081
KEGG ReactionR02832
KEGG Pathwayko00960,ko01100,ko01110,map00960,map01100,map01110
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464
Exons4
Evalue9.6e-81
EggNOG OGsCOG1028@1|root,KOG0725@2759|Eukaryota,37IWV@33090|Viridiplantae,3GBIS@35493|Streptophyta,4JETE@91835|fabids
EC1.1.1.206
DescriptionTropinone reductase homolog
Cds size936
COG categoryQ
BRITEko00000,ko00001,ko01000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig641.2.2prot_P-wetherbeei_contig641.2.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig641 1513..2942 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186911.1309102-UTR-P-wetherbeei_contig641:1300..15121683186911.1309102-UTR-P-wetherbeei_contig641:1300..1512Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig641 1301..1512 -
1683186911.198707-UTR-P-wetherbeei_contig641:2942..31151683186911.198707-UTR-P-wetherbeei_contig641:2942..3115Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig641 2943..3115 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186911.1442695-CDS-P-wetherbeei_contig641:1512..18761683186911.1442695-CDS-P-wetherbeei_contig641:1512..1876Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig641 1513..1876 -
1683186911.1547422-CDS-P-wetherbeei_contig641:2132..22351683186911.1547422-CDS-P-wetherbeei_contig641:2132..2235Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig641 2133..2235 -
1683186911.1645596-CDS-P-wetherbeei_contig641:2362..25911683186911.1645596-CDS-P-wetherbeei_contig641:2362..2591Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig641 2363..2591 -
1683186911.1867812-CDS-P-wetherbeei_contig641:2702..29421683186911.1867812-CDS-P-wetherbeei_contig641:2702..2942Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig641 2703..2942 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig641.2.2

>prot_P-wetherbeei_contig641.2.2 ID=prot_P-wetherbeei_contig641.2.2|Name=mRNA_P-wetherbeei_contig641.2.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=312bp
MAAERWGLTGQTALVTGGTKGIGKAITTELATLGARVLICARSEEGLEEA
QREWKSAGLEIHAVKADVGISEERSALLAKANDLFAGNLSILVNNVGNNV
KRKTVDYTDGEFHEMMNINFGSVYQLTRAAHPLLKSAGHSSVVNISSVAG
VAAISSESAYAAAKASLNHMTSYLGCEWAKDGIRVNAICPWFTNTPLVAP
VLRDAATMAGVLRRTPLGRIAQPEEVSALAAFLCMQPASYVTAQVICVDG
ERLLCKEGLGSVAYSVALAVPARMVVAARMVAAVAAMAQLPVRREWWWRW
RTAGVAVLVVS*
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mRNA from alignment at P-wetherbeei_contig641:1301..3115-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig641.2.2 ID=mRNA_P-wetherbeei_contig641.2.2|Name=mRNA_P-wetherbeei_contig641.2.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1815bp|location=Sequence derived from alignment at P-wetherbeei_contig641:1301..3115- (Phaeothamnion wetherbeei SAG_119_79)
TATCTTTCTAAATTTGAGGAGAGGTAAACCTATGTAGGCCCTCTTCCCTT TTCCACTAAGCTAGCAGCACCTTTGCTCTCCGTATCCCGACGGCAAACGG CTCAGAAAAGGAGCGGAGCGAAAACTATCTTTTGAAGCAAACGCACAATC GGCATAAAGACAAGAAGCTTGACATGGCGGCAGAGAGATGGGGGCTGACG GGACAAACCGCCCTCGTCACGGGCGGCACCAAGGGGATTGGCAAAGCCAT CACCACCGAACTGGCCACCCTCGGGGCTCGAGTGTTAATCTGCGCTCGCA GCGAGGAAGGACTCGAAGAGGCGCAGCGGGAATGGAAATCGGCGGGGCTC GAAATCCACGCTGTGAAGGCCGACGTTGGAATCTCCGAAGAAAGGAGCGC TCTGCTCGCAAAGGTGAGGATTGCCTTCGGCGAACTCGTTTTCCCTCTTT CCAAGCAATCCTGAGGCGCGCAGTCATGAAGGCATTTCTAAAATGTTTCG TCTCTTTGCTCCTCGAGCCGCCAGGCCAACGATCTTTTTGCGGGAAATCT TAGCATTCTTGTCAACAACGTGGGCAACAACGTCAAAAGGAAAACAGTCG ATTATACTGATGGAGAGTTTCACGAGATGATGAACATCAACTTCGGAAGT GTTTACCAGCTGACGCGAGCCGCGCACCCACTCCTGAAGAGCGCCGGCCA TTCCAGCGTCGTCAACATCAGCTCCGTCGCTGGAGTTGCGGCCATATCTT CGGGTGAGGCTATCGTCGTCTATCTAGAGAAGGCGCGGCGTGACATTGGG TGCAGTACATGTCGTTGACCATGAACTACGTTTCGATGGGCTGAAGGAAG CTTGCTATCATATCCTTCCCCCCGCTGCAGAATCGGCTTACGCGGCCGCG AAGGCGTCCTTGAACCACATGACTTCGTATCTGGGGTGCGAGTGGGCCAA GGACGGGATAAGAGTCAACGCCATCTGCCCGTGGTGAGTGCCGACTCGAT CCCCTGCAACCTTGGATGCACTCAATCTTGCAGCCTTGATCTCACGAAGA AAGCAACGAGTACGTGCCATGGGAAGTCGGGAAAAGGGAAGTTGAAGCTT CGGTCCTGGTGGAAGAAATCGAAATCAATTCAACTGGGGGTCGCTAATGG ATTCTCTTAAAGAGCAATAACTTACCACTTAAGACGAAATGTAAGAGAAT TGGCTGACGCTGAGTTCGCGAGACCATAAATAAATTCAGGTTCACCAACA CACCGCTGGTGGCACCGGTTCTGCGCGACGCGGCCACGATGGCAGGGGTG CTCCGCCGCACGCCGCTCGGCCGCATCGCCCAGCCGGAGGAGGTCTCGGC GCTCGCGGCCTTCCTCTGCATGCAGCCGGCGAGCTATGTGACTGCGCAGG TCATCTGCGTCGACGGTGAGAGGCTTCTGTGTAAGGAGGGGCTCGGGTCC GTAGCTTATTCGGTGGCACTAGCGGTGCCAGCGAGAATGGTGGTAGCGGC AAGAATGGTGGCTGCGGTGGCGGCGATGGCGCAGCTGCCGGTCCGGCGAG AGTGGTGGTGGCGGTGGCGGACAGCTGGGGTCGCCGTCCTGGTTGTTTCG TAGCATGGCTTACTTGACATTTCATCGCATGGGAGATGCAGCTCCGTGAA ACTCAGTGGCCTCAACTTCTTTCGCTGATGCTTCTGCCCTACATGTTTCT GCGAAACTATTTGCGCTTGCTCCGGCAGGCGGATTTACGAAGAACGGCTG GATGATAAGCTAGTCAGTTATGGGCGCAACATATTCGGAAGTCATTAAGA GGCCGGGGGTGGCTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig641:1301..3115-

>mRNA_P-wetherbeei_contig641.2.2 ID=mRNA_P-wetherbeei_contig641.2.2|Name=mRNA_P-wetherbeei_contig641.2.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=936bp|location=Sequence derived from alignment at P-wetherbeei_contig641:1301..3115- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGGCAGAGAGATGGGGGCTGACGGGACAAACCGCCCTCGTCACGGG
CGGCACCAAGGGGATTGGCAAAGCCATCACCACCGAACTGGCCACCCTCG
GGGCTCGAGTGTTAATCTGCGCTCGCAGCGAGGAAGGACTCGAAGAGGCG
CAGCGGGAATGGAAATCGGCGGGGCTCGAAATCCACGCTGTGAAGGCCGA
CGTTGGAATCTCCGAAGAAAGGAGCGCTCTGCTCGCAAAGGCCAACGATC
TTTTTGCGGGAAATCTTAGCATTCTTGTCAACAACGTGGGCAACAACGTC
AAAAGGAAAACAGTCGATTATACTGATGGAGAGTTTCACGAGATGATGAA
CATCAACTTCGGAAGTGTTTACCAGCTGACGCGAGCCGCGCACCCACTCC
TGAAGAGCGCCGGCCATTCCAGCGTCGTCAACATCAGCTCCGTCGCTGGA
GTTGCGGCCATATCTTCGGAATCGGCTTACGCGGCCGCGAAGGCGTCCTT
GAACCACATGACTTCGTATCTGGGGTGCGAGTGGGCCAAGGACGGGATAA
GAGTCAACGCCATCTGCCCGTGGTTCACCAACACACCGCTGGTGGCACCG
GTTCTGCGCGACGCGGCCACGATGGCAGGGGTGCTCCGCCGCACGCCGCT
CGGCCGCATCGCCCAGCCGGAGGAGGTCTCGGCGCTCGCGGCCTTCCTCT
GCATGCAGCCGGCGAGCTATGTGACTGCGCAGGTCATCTGCGTCGACGGT
GAGAGGCTTCTGTGTAAGGAGGGGCTCGGGTCCGTAGCTTATTCGGTGGC
ACTAGCGGTGCCAGCGAGAATGGTGGTAGCGGCAAGAATGGTGGCTGCGG
TGGCGGCGATGGCGCAGCTGCCGGTCCGGCGAGAGTGGTGGTGGCGGTGG
CGGACAGCTGGGGTCGCCGTCCTGGTTGTTTCGTAG
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