mRNA_P-wetherbeei_contig6400.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6400.1.1
Unique NamemRNA_P-wetherbeei_contig6400.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig6400.1.1 vs. uniprot
Match: A0E0W7_PARTE (RING-type domain-containing protein n=1 Tax=Paramecium tetraurelia TaxID=5888 RepID=A0E0W7_PARTE)

HSP 1 Score: 64.3 bits (155), Expect = 1.380e-10
Identity = 26/54 (48.15%), Postives = 39/54 (72.22%), Query Frame = 1 
Query:   13 ADSECYLCCESQADAVFLDCGHGGACMGCAMQVCALQAECPICRGHVSQVIEID 174
            ++++C +CCE  ++AVF++CGHGG C  CA+QV   Q EC +CR  + Q+ EID
Sbjct:  350 SNNKCIICCEQASNAVFMNCGHGGICYQCAVQVAQNQKECFLCRQIILQIYEID 403
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BLAST of mRNA_P-wetherbeei_contig6400.1.1 vs. uniprot
Match: A0A7S1B1Y5_NOCSC (Hypothetical protein (Fragment) n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1B1Y5_NOCSC)

HSP 1 Score: 63.9 bits (154), Expect = 1.930e-10
Identity = 24/53 (45.28%), Postives = 39/53 (73.58%), Query Frame = 1 
Query:   13 ADSECYLCCESQADAVFLDCGHGGACMGCAMQVCALQAECPICRGHVSQVIEI 171
            +D+ CY+C E++ DA+FL+CGHGG C  CA+++   +  CPICRG ++ ++ I
Sbjct:  511 SDNVCYICYEAKPDAIFLECGHGGICSLCALELKNRRQTCPICRGVITHIVRI 563
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BLAST of mRNA_P-wetherbeei_contig6400.1.1 vs. uniprot
Match: A0A6U5ESI1_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A6U5ESI1_9EUKA)

HSP 1 Score: 58.9 bits (141), Expect = 1.160e-9
Identity = 24/57 (42.11%), Postives = 38/57 (66.67%), Query Frame = 1 
Query:   16 DSECYLCCESQADAVFLDCGHGGACMGCAMQVCALQAE---CPICRGHVSQVIEIDL 177
            ++ C++C E   DAV L+CGHGG CMGCA ++   +     CP+CR  +SQV+++ +
Sbjct:   39 ETACWICFEGPRDAVMLECGHGGICMGCAKRLLKKKGRGKGCPMCRQPISQVVQVQV 95
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BLAST of mRNA_P-wetherbeei_contig6400.1.1 vs. uniprot
Match: A0DUT5_PARTE (RING-type domain-containing protein n=1 Tax=Paramecium tetraurelia TaxID=5888 RepID=A0DUT5_PARTE)

HSP 1 Score: 60.8 bits (146), Expect = 2.330e-9
Identity = 26/58 (44.83%), Postives = 34/58 (58.62%), Query Frame = 1 
Query:    1 KQMLADSECYLCCESQADAVFLDCGHGGACMGCAMQVCALQAECPICRGHVSQVIEID 174
            K   A  +C +CCE QA+AV + CGHGG C  CA +      EC +CR  V ++ EID
Sbjct:  358 KTQAASIQCIICCEKQANAVLMKCGHGGICYECAFESAQKSRECFLCRQRVIEIYEID 415
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BLAST of mRNA_P-wetherbeei_contig6400.1.1 vs. uniprot
Match: A0A1R2BFB0_9CILI (RING-type domain-containing protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2BFB0_9CILI)

HSP 1 Score: 60.8 bits (146), Expect = 2.340e-9
Identity = 22/50 (44.00%), Postives = 36/50 (72.00%), Query Frame = 1 
Query:   25 CYLCCESQADAVFLDCGHGGACMGCAMQVCALQAECPICRGHVSQVIEID 174
            C +CCE+Q+DAV +DCGHGG C  C++++      C +CR  ++QV++I+
Sbjct:  400 CDMCCENQSDAVIMDCGHGGICYNCSLELWKTVGMCHMCRSDITQVLQIE 449
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BLAST of mRNA_P-wetherbeei_contig6400.1.1 vs. uniprot
Match: I7LXF1_TETTS (Zinc finger, C3HC4 type (RING finger) protein n=1 Tax=Tetrahymena thermophila (strain SB210) TaxID=312017 RepID=I7LXF1_TETTS)

HSP 1 Score: 58.9 bits (141), Expect = 7.070e-9
Identity = 20/54 (37.04%), Postives = 36/54 (66.67%), Query Frame = 1 
Query:   16 DSECYLCCESQADAVFLDCGHGGACMGCAMQVCALQAECPICRGHVSQVIEIDL 177
            +  C +C ++  D+VF++CGHGG C  C++ +  +  EC +CR  + Q+++IDL
Sbjct:  162 EQNCLICFQNSQDSVFMNCGHGGICYDCSLDIWKITGECYLCREKIKQILQIDL 215
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BLAST of mRNA_P-wetherbeei_contig6400.1.1 vs. uniprot
Match: A0A699ZH23_HAELA (E3 ubiquitin-protein ligase (Fragment) n=1 Tax=Haematococcus lacustris TaxID=44745 RepID=A0A699ZH23_HAELA)

HSP 1 Score: 57.8 bits (138), Expect = 8.330e-9
Identity = 24/54 (44.44%), Postives = 33/54 (61.11%), Query Frame = 1 
Query:   16 DSECYLCCESQADAVFLDCGHGGACMGCAMQVCALQA-ECPICRGHVSQVIEID 174
            D  C +C +  +  VFLDCGHGG C  CA ++      ECP CR H+ QV+E++
Sbjct:  107 DGLCVICYDKPSSCVFLDCGHGGFCKACAYRIFVRPPNECPTCRQHIEQVVELE 160
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BLAST of mRNA_P-wetherbeei_contig6400.1.1 vs. uniprot
Match: A0DKE3_PARTE (RING-type domain-containing protein n=1 Tax=Paramecium tetraurelia TaxID=5888 RepID=A0DKE3_PARTE)

HSP 1 Score: 57.4 bits (137), Expect = 3.890e-8
Identity = 21/54 (38.89%), Postives = 36/54 (66.67%), Query Frame = 1 
Query:   13 ADSECYLCCESQADAVFLDCGHGGACMGCAMQVCALQAECPICRGHVSQVIEID 174
            ++++C +CCE   +A+ ++CGHGG C  CA+Q+   Q EC +CR  +  + E+D
Sbjct:  353 SNNKCIICCEKPKNAILMNCGHGGICYQCAIQMAQKQKECFLCRQIIQFIYEVD 406
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BLAST of mRNA_P-wetherbeei_contig6400.1.1 vs. uniprot
Match: Q23YD7_TETTS (Zinc finger, C3HC4 type (RING finger) protein n=1 Tax=Tetrahymena thermophila (strain SB210) TaxID=312017 RepID=Q23YD7_TETTS)

HSP 1 Score: 57.4 bits (137), Expect = 3.960e-8
Identity = 21/51 (41.18%), Postives = 34/51 (66.67%), Query Frame = 1 
Query:   25 CYLCCESQADAVFLDCGHGGACMGCAMQVCALQAECPICRGHVSQVIEIDL 177
            C +C +   D+VF+DCGHGG C  C++++     EC +CR  + QV+++DL
Sbjct:  960 CLVCFDKSPDSVFMDCGHGGVCYDCSLEIWKKTGECYLCRLKIVQVLQVDL 1010
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BLAST of mRNA_P-wetherbeei_contig6400.1.1 vs. uniprot
Match: Q24FU2_TETTS (Zinc finger, C3HC4 type (RING finger) protein n=1 Tax=Tetrahymena thermophila (strain SB210) TaxID=312017 RepID=Q24FU2_TETTS)

HSP 1 Score: 57.4 bits (137), Expect = 3.980e-8
Identity = 21/52 (40.38%), Postives = 36/52 (69.23%), Query Frame = 1 
Query:   22 ECYLCCESQADAVFLDCGHGGACMGCAMQVCALQAECPICRGHVSQVIEIDL 177
            +C +C ++Q D+V L+CGHGG C  CA+ +     EC +CR  +S++++ID+
Sbjct:  884 QCLVCFDNQPDSVILECGHGGLCNQCALDIWKKTGECYLCRQTISKIVQIDI 935
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6400.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0E0W7_PARTE1.380e-1048.15RING-type domain-containing protein n=1 Tax=Parame... [more]
A0A7S1B1Y5_NOCSC1.930e-1045.28Hypothetical protein (Fragment) n=1 Tax=Noctiluca ... [more]
A0A6U5ESI1_9EUKA1.160e-942.11Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
A0DUT5_PARTE2.330e-944.83RING-type domain-containing protein n=1 Tax=Parame... [more]
A0A1R2BFB0_9CILI2.340e-944.00RING-type domain-containing protein n=1 Tax=Stento... [more]
I7LXF1_TETTS7.070e-937.04Zinc finger, C3HC4 type (RING finger) protein n=1 ... [more]
A0A699ZH23_HAELA8.330e-944.44E3 ubiquitin-protein ligase (Fragment) n=1 Tax=Hae... [more]
A0DKE3_PARTE3.890e-838.89RING-type domain-containing protein n=1 Tax=Parame... [more]
Q23YD7_TETTS3.960e-841.18Zinc finger, C3HC4 type (RING finger) protein n=1 ... [more]
Q24FU2_TETTS3.980e-840.38Zinc finger, C3HC4 type (RING finger) protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6400contigP-wetherbeei_contig6400:112..288 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog5911.EAS04519
PFAMszf-C3HC4_3
Model size177
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue2.32e-09
EggNOG OGs2D0IR@1|root,2SECD@2759|Eukaryota
DescriptionZinc finger, C3HC4 type (RING finger)
Cds size171
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186910.5388079-CDS-P-wetherbeei_contig6400:111..2821683186910.5388079-CDS-P-wetherbeei_contig6400:111..282Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6400 112..282 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186910.5511434-UTR-P-wetherbeei_contig6400:282..2881683186910.5511434-UTR-P-wetherbeei_contig6400:282..288Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6400 283..288 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6400.1.1prot_P-wetherbeei_contig6400.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6400 112..282 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6400.1.1

>prot_P-wetherbeei_contig6400.1.1 ID=prot_P-wetherbeei_contig6400.1.1|Name=mRNA_P-wetherbeei_contig6400.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=57bp
MLADSECYLCCESQADAVFLDCGHGGACMGCAMQVCALQAECPICRGHVS
QVIEIDL
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mRNA from alignment at P-wetherbeei_contig6400:112..288-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6400.1.1 ID=mRNA_P-wetherbeei_contig6400.1.1|Name=mRNA_P-wetherbeei_contig6400.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=177bp|location=Sequence derived from alignment at P-wetherbeei_contig6400:112..288- (Phaeothamnion wetherbeei SAG_119_79)
AAGCAAATGCTGGCGGACTCTGAGTGTTATTTGTGCTGCGAGAGCCAGGC
CGACGCGGTTTTCCTGGACTGCGGCCACGGCGGCGCCTGCATGGGCTGCG
CCATGCAGGTCTGCGCACTGCAGGCCGAATGTCCGATTTGCCGCGGCCAC
GTGTCACAGGTCATAGAGATCGATCTT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6400:112..288-

>mRNA_P-wetherbeei_contig6400.1.1 ID=mRNA_P-wetherbeei_contig6400.1.1|Name=mRNA_P-wetherbeei_contig6400.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=171bp|location=Sequence derived from alignment at P-wetherbeei_contig6400:112..288- (Phaeothamnion wetherbeei SAG_119_79)
ATGCTGGCGGACTCTGAGTGTTATTTGTGCTGCGAGAGCCAGGCCGACGC
GGTTTTCCTGGACTGCGGCCACGGCGGCGCCTGCATGGGCTGCGCCATGC
AGGTCTGCGCACTGCAGGCCGAATGTCCGATTTGCCGCGGCCACGTGTCA
CAGGTCATAGAGATCGATCTT
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