prot_P-wetherbeei_contig64.1.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-wetherbeei_contig64.1.1
Unique Nameprot_P-wetherbeei_contig64.1.1
Typepolypeptide
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length139
Homology
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BLAST of mRNA_P-wetherbeei_contig64.1.1 vs. uniprot
Match: UPI0003F0DBCE (high mobility group protein B3-like n=1 Tax=Elephantulus edwardii TaxID=28737 RepID=UPI0003F0DBCE)

HSP 1 Score: 52.8 bits (125), Expect = 1.330e-5
Identity = 33/114 (28.95%), Postives = 58/114 (50.88%), Query Frame = 0 
Query:   11 INKELGTLWKATSAEDRSAYEAMATKDKLRYLREMKEYKPVEGYRREVPRINAPKTANGAGAASVPLCRPAYSLFASQERRGVLESSSRPARARMSKIFGQRWHHLNPAEAQLY 124
             +K+    WK  S ++++ ++ MA   K+RY REMK+Y P +G ++E P  NAPK                + LF S+ R  +  ++   +   ++K  G+ W++L+  E Q Y
Sbjct:   41 FSKKCSERWKTMSGKEKAKFDEMAKAGKVRYDREMKDYGPAKGGKKEDP--NAPKRPPSG-----------FFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLSDGEKQSY 141
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BLAST of mRNA_P-wetherbeei_contig64.1.1 vs. uniprot
Match: A0A0D9SDW3_CHLSB (Uncharacterized protein n=5 Tax=Simiiformes TaxID=314293 RepID=A0A0D9SDW3_CHLSB)

HSP 1 Score: 50.4 bits (119), Expect = 8.720e-5
Identity = 33/114 (28.95%), Postives = 57/114 (50.00%), Query Frame = 0 
Query:   11 INKELGTLWKATSAEDRSAYEAMATKDKLRYLREMKEYKPVEGYRREVPRINAPKTANGAGAASVPLCRPAYSLFASQERRGVLESSSRPARARMSKIFGQRWHHLNPAEAQLY 124
             +K+    WK  S +++S ++ MA  DK+ Y REMK+Y P +G ++E    NAPK                + LF S+    +  ++   +   ++K  G+ W++LN +E Q Y
Sbjct:   40 FSKKCSERWKTMSGKEKSKFDEMAKADKVCYDREMKDYGPAKGGKKEED-PNAPKRPPSG-----------FFLFCSEFHPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQPY 141
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig64.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
UPI0003F0DBCE1.330e-528.95high mobility group protein B3-like n=1 Tax=Elepha... [more]
A0A0D9SDW3_CHLSB8.720e-528.95Uncharacterized protein n=5 Tax=Simiiformes TaxID=... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036910High mobility group box domain superfamilyGENE3D1.10.30.10High mobility group box domaincoord: 1..59
e-value: 2.8E-11
score: 45.6
IPR036910High mobility group box domain superfamilyGENE3D1.10.30.10High mobility group box domaincoord: 60..138
e-value: 6.8E-7
score: 31.6
IPR036910High mobility group box domain superfamilySUPERFAMILY47095HMG-boxcoord: 79..137
IPR036910High mobility group box domain superfamilySUPERFAMILY47095HMG-boxcoord: 6..50
IPR009071High mobility group box domainPFAMPF00505HMG_boxcoord: 6..49
e-value: 3.4E-10
score: 40.2
IPR009071High mobility group box domainPROSITEPS50118HMG_BOX_2coord: 1..49
score: 11.447837
IPR009071High mobility group box domainPROSITEPS50118HMG_BOX_2coord: 81..139
score: 8.893345
NoneNo IPR availablePANTHERPTHR46040:SF3HIGH MOBILITY GROUP PROTEIN 2coord: 7..68
NoneNo IPR availablePANTHERPTHR46040HIGH MOBILITY GROUP PROTEIN 2coord: 7..68
NoneNo IPR availableCDDcd00084HMG-boxcoord: 6..46
e-value: 6.39651E-8
score: 44.9172

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig64contigP-wetherbeei_contig64:94..963 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig64.1.1mRNA_P-wetherbeei_contig64.1.1Phaeothamnion wetherbeei SAG_119_79mRNAP-wetherbeei_contig64 94..963 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-wetherbeei_contig64.1.1 ID=prot_P-wetherbeei_contig64.1.1|Name=mRNA_P-wetherbeei_contig64.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=139bp
QGQTILHNNTINKELGTLWKATSAEDRSAYEAMATKDKLRYLREMKEYKP
VEGYRREVPRINAPKTANGAGAASVPLCRPAYSLFASQERRGVLESSSRP
ARARMSKIFGQRWHHLNPAEAQLYAELEEVDFLRYEEGA
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036910HMG_box_dom_sf
IPR009071HMG_box_dom