mRNA_P-wetherbeei_contig6388.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6388.1.1
Unique NamemRNA_P-wetherbeei_contig6388.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6388.1.1 vs. uniprot
Match: A0A5C9B2X9_9BACT (Protein tyrosine phosphatase n=1 Tax=bacterium TaxID=1869227 RepID=A0A5C9B2X9_9BACT)

HSP 1 Score: 211 bits (538), Expect = 9.710e-68
Identity = 102/151 (67.55%), Postives = 117/151 (77.48%), Query Frame = 1
Query:   13 VLFVCTGNICRSPTAEGVFRRMVREAGLEDAIRIDSAGTHDYHVGDPPDTRAQLHAKGRGYDLSGLRARQVRGTDFTDFDLILVMDNANLTALRRVCLPGYGHKVRLFLEFGSRPGRAEVPDPYYGAGQGFEHVLDLVEDAARGLLEHMRR 465
            VLFVC GNICRSPTAEGVFR++ REAGLE+ + IDSAGTHDYHVG  PD RAQ  A  RG+DLS LRARQV   DF +FD IL MD  NL  L+R+C PG+ HK+RLFL + SR    EVPDPYYG  QGF+HVLDLVEDA+RGLLE + +
Sbjct:    6 VLFVCMGNICRSPTAEGVFRQLAREAGLEEVVCIDSAGTHDYHVGKAPDERAQAAALRRGFDLSLLRARQVEERDFLEFDHILAMDRENLANLQRICPPGHRHKIRLFLSYSSRFSEREVPDPYYGGRQGFDHVLDLVEDASRGLLESLAK 156          
BLAST of mRNA_P-wetherbeei_contig6388.1.1 vs. uniprot
Match: UPI0003A76FF5 (low molecular weight phosphotyrosine protein phosphatase n=1 Tax=Chitiniphilus shinanonensis TaxID=553088 RepID=UPI0003A76FF5)

HSP 1 Score: 209 bits (531), Expect = 1.130e-66
Identity = 99/153 (64.71%), Postives = 113/153 (73.86%), Query Frame = 1
Query:   13 VLFVCTGNICRSPTAEGVFRRMVREAGLEDAIRIDSAGTHDYHVGDPPDTRAQLHAKGRGYDLSGLRARQVRGTDFTDFDLILVMDNANLTALRRVCLPGYGHKVRLFLEFGSRPGRAEVPDPYYGAGQGFEHVLDLVEDAARGLLEHMRREL 471
            VLFVCTGNICRSPTA+GV R +VREAGL D + +DSAGTHDYHVG+ PD RAQ HA  RGYDL  LRAR+V   DF  FDLIL MD  +L  LRR C   Y ++++LFL+F +     EVPDPYYG  QGFEHVLDLVED   GLL H+R EL
Sbjct:    6 VLFVCTGNICRSPTADGVMRHLVREAGLADRVEVDSAGTHDYHVGEAPDRRAQAHASKRGYDLRSLRAREVTSADFARFDLILAMDEGHLALLRRRCPEPYQNRLKLFLDFATHFNEREVPDPYYGGPQGFEHVLDLVEDGCEGLLTHIRTEL 158          
BLAST of mRNA_P-wetherbeei_contig6388.1.1 vs. uniprot
Match: A0A7C5KH04_9GAMM (Protein-tyrosine-phosphatase n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A7C5KH04_9GAMM)

HSP 1 Score: 207 bits (527), Expect = 4.160e-66
Identity = 101/154 (65.58%), Postives = 115/154 (74.68%), Query Frame = 1
Query:    4 MAGVLFVCTGNICRSPTAEGVFRRMVREAGLEDAIRIDSAGTHDYHVGDPPDTRAQLHAKGRGYDLSGLRARQVRGTDFTDFDLILVMDNANLTALRRVCLPGYGHKVRLFLEFGSRPGRAEVPDPYYGAGQGFEHVLDLVEDAARGLLEHMRR 465
            M  VLFVC GNICRSPTA GVFR +VR+ GLEDAI+IDSAGTH YHVG+PPD RAQ  A+ RG DLS LRARQV   DF  FD +L MD  NL  LR +C PG   ++RLFL+F  +    EVPDPYYG  QGFEHV DLVE+AARGLLE +R+
Sbjct:    1 MVKVLFVCMGNICRSPTAHGVFRELVRQEGLEDAIQIDSAGTHAYHVGNPPDQRAQATARNRGIDLSDLRARQVNPEDFERFDYVLAMDEENLVILRELCPPGREERLRLFLDFAPQRPEREVPDPYYGGPQGFEHVFDLVEEAARGLLEDIRQ 154          
BLAST of mRNA_P-wetherbeei_contig6388.1.1 vs. uniprot
Match: UPI00054D4530 (low molecular weight phosphotyrosine protein phosphatase n=1 Tax=Andreprevotia chitinilytica TaxID=396808 RepID=UPI00054D4530)

HSP 1 Score: 206 bits (525), Expect = 1.050e-65
Identity = 98/153 (64.05%), Postives = 110/153 (71.90%), Query Frame = 1
Query:   13 VLFVCTGNICRSPTAEGVFRRMVREAGLEDAIRIDSAGTHDYHVGDPPDTRAQLHAKGRGYDLSGLRARQVRGTDFTDFDLILVMDNANLTALRRVCLPGYGHKVRLFLEFGSRPGRAEVPDPYYGAGQGFEHVLDLVEDAARGLLEHMRREL 471
            VLFVCTGNICRSPTA+GV R MV  AGL D + +DSAGTHDYHVG+ PD RA  HA  RGYDLS LRAR+V+  DF  FDL+L MD  +   L R C P   HK+RLFLEF  +    EVPDPYYG  +GFEHVLDLVED   GLLEH+R  L
Sbjct:    9 VLFVCTGNICRSPTADGVLRSMVESAGLADRVEVDSAGTHDYHVGEAPDRRATAHAAKRGYDLSYLRAREVKPADFRQFDLVLAMDKGHQRLLERACPPAERHKLRLFLEFARQHAEREVPDPYYGGPEGFEHVLDLVEDGCEGLLEHIRGRL 161          
BLAST of mRNA_P-wetherbeei_contig6388.1.1 vs. uniprot
Match: A0A4U0PWE7_9NEIS (Protein-tyrosine-phosphatase n=1 Tax=Chitiniphilus eburneus TaxID=2571148 RepID=A0A4U0PWE7_9NEIS)

HSP 1 Score: 206 bits (523), Expect = 1.860e-65
Identity = 97/153 (63.40%), Postives = 114/153 (74.51%), Query Frame = 1
Query:   13 VLFVCTGNICRSPTAEGVFRRMVREAGLEDAIRIDSAGTHDYHVGDPPDTRAQLHAKGRGYDLSGLRARQVRGTDFTDFDLILVMDNANLTALRRVCLPGYGHKVRLFLEFGSRPGRAEVPDPYYGAGQGFEHVLDLVEDAARGLLEHMRREL 471
            VLFVCTGNICRSPTA+G+ R MV+ AGLE+ + +DSAGTHDYHVG+ PD RAQ HA  RGYDL  LRAR+V   DF  FDL+L MD  +L  LRR C   Y  +V+LFL+F +R    EVPDPYYG  QGFEHVLDLVED  RGL+ H+R +L
Sbjct:    6 VLFVCTGNICRSPTADGILRHMVKAAGLENCVEVDSAGTHDYHVGEAPDRRAQSHAAKRGYDLCSLRAREVVEADFARFDLVLAMDEGHLALLRRRCPEPYRERVKLFLDFATRFHEREVPDPYYGGPQGFEHVLDLVEDGCRGLMAHIRGQL 158          
BLAST of mRNA_P-wetherbeei_contig6388.1.1 vs. uniprot
Match: A0A7I8E757_9NEIS (Protein-tyrosine-phosphatase n=1 Tax=Jeongeupia sp. HS-3 TaxID=1009682 RepID=A0A7I8E757_9NEIS)

HSP 1 Score: 204 bits (518), Expect = 1.220e-64
Identity = 97/153 (63.40%), Postives = 116/153 (75.82%), Query Frame = 1
Query:   13 VLFVCTGNICRSPTAEGVFRRMVREAGLEDAIRIDSAGTHDYHVGDPPDTRAQLHAKGRGYDLSGLRARQVRGTDFTDFDLILVMDNANLTALRRVCLPGYGHKVRLFLEFGSRPGRAEVPDPYYGAGQGFEHVLDLVEDAARGLLEHMRREL 471
            V+FVCTGNICRSPTA+GV  +MV EAGL  ++ +DSAGT DYHVG+ PD RAQ HAK RGYDLSGLRARQV  +DF+ FDLIL MD +++  L R C P +  K++LFL+F ++    EVPDPYYG   GFEHVLDLVED   GLL H+R EL
Sbjct:    6 VVFVCTGNICRSPTADGVLLKMVEEAGLAASVVVDSAGTQDYHVGEAPDRRAQAHAKKRGYDLSGLRARQVELSDFSRFDLILAMDTSHMRVLERHCPPEHQAKIKLFLDFANQAHEREVPDPYYGGDAGFEHVLDLVEDGCAGLLTHVRNEL 158          
BLAST of mRNA_P-wetherbeei_contig6388.1.1 vs. uniprot
Match: A0A4V2UQM2_9PROT (Protein-tyrosine-phosphatase n=1 Tax=Sulfuritortus calidifontis TaxID=1914471 RepID=A0A4V2UQM2_9PROT)

HSP 1 Score: 203 bits (516), Expect = 2.310e-64
Identity = 101/154 (65.58%), Postives = 113/154 (73.38%), Query Frame = 1
Query:    1 SMAGVLFVCTGNICRSPTAEGVFRRMVREAGLEDAIRIDSAGTHDYHVGDPPDTRAQLHAKGRGYDLSGLRARQVRGTDFTDFDLILVMDNANLTALRRVCLPGYGHKVRLFLEFGSRPGRAEVPDPYYGAGQGFEHVLDLVEDAARGLLEHMR 462
            S   VLFVC GNICRSPTAEGVFRRMV E GLE  +RIDSAGTHDYH+G  PD RAQ  A GRGYDLS LR RQV   DFT+FD +L MD  NL  L+R+C     HK++LFL F  R    EVPDPYYG  QGF+ VLD+VEDAARGLL+ +R
Sbjct:    5 SKVSVLFVCMGNICRSPTAEGVFRRMVAEEGLEHRVRIDSAGTHDYHIGKAPDRRAQAAAIGRGYDLSPLRGRQVSRRDFTEFDYVLAMDLDNLANLQRICPDDQRHKLQLFLAFSERFKGQEVPDPYYGGAQGFDLVLDMVEDAARGLLQAIR 158          
BLAST of mRNA_P-wetherbeei_contig6388.1.1 vs. uniprot
Match: UPI001BC69C93 (Low molecular weight phosphotyrosine protein phosphatase n=1 Tax=Sulfuricella sp. TaxID=2099377 RepID=UPI001BC69C93)

HSP 1 Score: 202 bits (515), Expect = 2.970e-64
Identity = 101/151 (66.89%), Postives = 113/151 (74.83%), Query Frame = 1
Query:   13 VLFVCTGNICRSPTAEGVFRRMVREAGLEDAIRIDSAGTHDYHVGDPPDTRAQLHAKGRGYDLSGLRARQVRGTDFTDFDLILVMDNANLTALRRVCLPGYGHKVRLFLEFGSRPGRAEVPDPYYGAGQGFEHVLDLVEDAARGLLEHMRR 465
            VLFVC GNICRSPTAEGVFRR+V EAGL DA+ IDSAGTH YH+G PPD RAQ  A+ RGY LSGLR RQV   DF +FD IL MD  NL+ L+RV    Y  K+ LFLE G+R    EVPDPYYG  QGFEHVLDLVEDA+ GLL  +R+
Sbjct:    6 VLFVCMGNICRSPTAEGVFRRLVAEAGLTDAVLIDSAGTHAYHIGKPPDRRAQAAAEKRGYQLSGLRGRQVSAEDFVEFDYILAMDEENLSNLKRVSHAHYHAKLSLFLEHGTRFSEREVPDPYYGGDQGFEHVLDLVEDASVGLLGKIRK 156          
BLAST of mRNA_P-wetherbeei_contig6388.1.1 vs. uniprot
Match: UPI0016526002 (low molecular weight phosphotyrosine protein phosphatase n=1 Tax=Chitinolyticbacter meiyuanensis TaxID=682798 RepID=UPI0016526002)

HSP 1 Score: 202 bits (515), Expect = 3.170e-64
Identity = 96/153 (62.75%), Postives = 112/153 (73.20%), Query Frame = 1
Query:   13 VLFVCTGNICRSPTAEGVFRRMVREAGLEDAIRIDSAGTHDYHVGDPPDTRAQLHAKGRGYDLSGLRARQVRGTDFTDFDLILVMDNANLTALRRVCLPGYGHKVRLFLEFGSRPGRAEVPDPYYGAGQGFEHVLDLVEDAARGLLEHMRREL 471
            VL VCTGNICRSPTA+GV R++VR+AGL   I +DS GTHDYHVG+ PD RAQ HAK RGYDLS LRAR+V   D+  FDLIL MD  +L+ L+R C     HK+ LFLEF S     EVPDPYYG  +GFEHVLDLVED   G+L+H R +L
Sbjct:    6 VLMVCTGNICRSPTADGVLRQLVRDAGLAGEIEVDSVGTHDYHVGEAPDRRAQSHAKRRGYDLSTLRAREVSAADYRHFDLILAMDEGHLSILQRRCPAELRHKIHLFLEFASAHAEREVPDPYYGGPEGFEHVLDLVEDGCAGVLQHAREQL 158          
BLAST of mRNA_P-wetherbeei_contig6388.1.1 vs. uniprot
Match: A0A258TQ01_9PROT (Protein-tyrosine-phosphatase n=1 Tax=Hydrogenophilales bacterium 28-61-23 TaxID=1970530 RepID=A0A258TQ01_9PROT)

HSP 1 Score: 201 bits (511), Expect = 1.170e-63
Identity = 97/152 (63.82%), Postives = 110/152 (72.37%), Query Frame = 1
Query:   13 VLFVCTGNICRSPTAEGVFRRMVREAGLEDAIRIDSAGTHDYHVGDPPDTRAQLHAKGRGYDLSGLRARQVRGTDFTDFDLILVMDNANLTALRRVCLPGYGHKVRLFLEFGSRPGRAEVPDPYYGAGQGFEHVLDLVEDAARGLLEHMRRE 468
            +LFVC GNICRSPTAEGVFR  V EAGL   ++IDSAGTHDYH+G PPD RAQ  A GRGYDLSGLR RQV   DF +FD +L MD  NL  LR+ C     HKVR FL F  R    +VPDPYYG G GFE VLD+VEDA+ GL+E ++RE
Sbjct:    6 ILFVCMGNICRSPTAEGVFRDKVNEAGLSSNVQIDSAGTHDYHIGKPPDRRAQEAALGRGYDLSGLRGRQVSARDFEEFDFVLAMDTDNLAILRQECPDHLRHKVRRFLSFSRRYRDLDVPDPYYGGGAGFEQVLDMVEDASEGLIEAIKRE 157          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6388.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5C9B2X9_9BACT9.710e-6867.55Protein tyrosine phosphatase n=1 Tax=bacterium Tax... [more]
UPI0003A76FF51.130e-6664.71low molecular weight phosphotyrosine protein phosp... [more]
A0A7C5KH04_9GAMM4.160e-6665.58Protein-tyrosine-phosphatase n=1 Tax=Gammaproteoba... [more]
UPI00054D45301.050e-6564.05low molecular weight phosphotyrosine protein phosp... [more]
A0A4U0PWE7_9NEIS1.860e-6563.40Protein-tyrosine-phosphatase n=1 Tax=Chitiniphilus... [more]
A0A7I8E757_9NEIS1.220e-6463.40Protein-tyrosine-phosphatase n=1 Tax=Jeongeupia sp... [more]
A0A4V2UQM2_9PROT2.310e-6465.58Protein-tyrosine-phosphatase n=1 Tax=Sulfuritortus... [more]
UPI001BC69C932.970e-6466.89Low molecular weight phosphotyrosine protein phosp... [more]
UPI00165260023.170e-6462.75low molecular weight phosphotyrosine protein phosp... [more]
A0A258TQ01_9PROT1.170e-6363.82Protein-tyrosine-phosphatase n=1 Tax=Hydrogenophil... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6388contigP-wetherbeei_contig6388:564..1043 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog887062.HGR_03907
Preferred nameptpA
PFAMsLMWPc
Model size480
Max annot lvl28216|Betaproteobacteria
KEGG koko:K01104
Hectar predicted targeting categoryother localisation
GOsGO:0000271,GO:0003674,GO:0003824,GO:0004721,GO:0004725,GO:0005975,GO:0005976,GO:0006464,GO:0006470,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009242,GO:0009987,GO:0016051,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019538,GO:0033692,GO:0034637,GO:0034645,GO:0035335,GO:0036211,GO:0042578,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044267,GO:0046377,GO:0071704,GO:0140096,GO:1901135,GO:1901137,GO:1901564,GO:1901576
Exons1
Evalue2.83e-62
EggNOG OGsCOG0394@1|root,COG0394@2|Bacteria,1RH90@1224|Proteobacteria,2VSKW@28216|Betaproteobacteria,4AEJE@80864|Comamonadaceae
EC3.1.3.48
DescriptionBelongs to the low molecular weight phosphotyrosine protein phosphatase family
Cds size477
COG categoryT
BRITEko00000,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186909.4748929-CDS-P-wetherbeei_contig6388:563..10401683186909.4748929-CDS-P-wetherbeei_contig6388:563..1040Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6388 564..1040 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186909.4882503-UTR-P-wetherbeei_contig6388:1040..10431683186909.4882503-UTR-P-wetherbeei_contig6388:1040..1043Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6388 1041..1043 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6388.1.1prot_P-wetherbeei_contig6388.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6388 564..1040 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6388.1.1

>prot_P-wetherbeei_contig6388.1.1 ID=prot_P-wetherbeei_contig6388.1.1|Name=mRNA_P-wetherbeei_contig6388.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=159bp
MAGVLFVCTGNICRSPTAEGVFRRMVREAGLEDAIRIDSAGTHDYHVGDP
PDTRAQLHAKGRGYDLSGLRARQVRGTDFTDFDLILVMDNANLTALRRVC
LPGYGHKVRLFLEFGSRPGRAEVPDPYYGAGQGFEHVLDLVEDAARGLLE
HMRRELRP*
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mRNA from alignment at P-wetherbeei_contig6388:564..1043-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6388.1.1 ID=mRNA_P-wetherbeei_contig6388.1.1|Name=mRNA_P-wetherbeei_contig6388.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=480bp|location=Sequence derived from alignment at P-wetherbeei_contig6388:564..1043- (Phaeothamnion wetherbeei SAG_119_79)
AGCATGGCCGGCGTCCTGTTCGTCTGCACGGGCAACATCTGCCGCTCCCC GACGGCCGAGGGCGTGTTCCGCCGCATGGTGCGCGAAGCGGGGCTCGAGG ACGCCATCCGGATCGATTCGGCGGGGACGCACGATTACCATGTGGGTGAT CCTCCCGACACGCGGGCGCAGTTGCATGCGAAGGGGCGCGGTTACGACTT GTCCGGATTGAGGGCAAGGCAAGTTCGCGGCACCGACTTCACCGACTTCG ACCTGATCCTCGTGATGGACAACGCCAACCTCACGGCGCTGCGCCGGGTC TGCCTGCCCGGGTACGGCCACAAGGTACGGCTATTCCTGGAGTTCGGGTC CCGGCCGGGGAGGGCCGAAGTGCCGGACCCGTACTACGGGGCAGGCCAGG GATTCGAGCATGTGCTCGACCTGGTGGAAGACGCAGCCCGCGGCCTGTTG GAACATATGCGCCGCGAACTGCGTCCCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6388:564..1043-

>mRNA_P-wetherbeei_contig6388.1.1 ID=mRNA_P-wetherbeei_contig6388.1.1|Name=mRNA_P-wetherbeei_contig6388.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=477bp|location=Sequence derived from alignment at P-wetherbeei_contig6388:564..1043- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCGGCGTCCTGTTCGTCTGCACGGGCAACATCTGCCGCTCCCCGAC
GGCCGAGGGCGTGTTCCGCCGCATGGTGCGCGAAGCGGGGCTCGAGGACG
CCATCCGGATCGATTCGGCGGGGACGCACGATTACCATGTGGGTGATCCT
CCCGACACGCGGGCGCAGTTGCATGCGAAGGGGCGCGGTTACGACTTGTC
CGGATTGAGGGCAAGGCAAGTTCGCGGCACCGACTTCACCGACTTCGACC
TGATCCTCGTGATGGACAACGCCAACCTCACGGCGCTGCGCCGGGTCTGC
CTGCCCGGGTACGGCCACAAGGTACGGCTATTCCTGGAGTTCGGGTCCCG
GCCGGGGAGGGCCGAAGTGCCGGACCCGTACTACGGGGCAGGCCAGGGAT
TCGAGCATGTGCTCGACCTGGTGGAAGACGCAGCCCGCGGCCTGTTGGAA
CATATGCGCCGCGAACTGCGTCCCTGA
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