mRNA_P-wetherbeei_contig6387.1.3 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6387.1.3
Unique NamemRNA_P-wetherbeei_contig6387.1.3
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6387.1.3 vs. uniprot
Match: A0A7S3MG22_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MG22_9STRA)

HSP 1 Score: 128 bits (322), Expect = 3.560e-28
Identity = 90/345 (26.09%), Postives = 144/345 (41.74%), Query Frame = 1
Query:  121 DLEEIRELAWAPRGYRDHGVRMRVWPKLLGLDTEALEEPRACMTQPHESTDQIDRDVQRSFTQYMRSSRWNAKELEALREEMFVVINAIVRKYDGILHYFQGFHDVIGVFLLVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVPAGVAPDVSPSPFWGVLAANGASPASTESSQGSGSSSGKVSPGRTAEGRLTSPDRMVEATVFALAEQSSVYFMRDCMRDSFRPVSKVLELLPVLLGRFAPEAQAFIAGAEVGPFYALPWYITWFSHDVPRLSDAARIFDALLASHPLMVLYVCAALVAHHADELLRCESEFASVHGFLASLP 1155
            DL+ +R+L+ +  G+ ++ +R RVWPKLLG++   + + R+ +  PH    Q+  DV+RS  +  ++  W     E  R+ +  ++ AI+ + +  L+Y+QGFHDV  VFLLV                                                                                                           +   FALAE  S  ++ D M   F  V + +++L V++         F+  AE+ PF+A  W +TWF+HD+  +SDAAR+FDA+L SHPL + Y+CAA V H  +E+L  E +F+ +H  L   P
Sbjct:   22 DLKALRKLSRSEGGFINNQLRARVWPKLLGVNRFDIPDYRSFID-PHRDDSQVKVDVERSLWKIDKTVTWRDTFREDRRKALCDIMMAILCR-NADLYYYQGFHDVTSVFLLVLDD--------------------------------------------------------------------------------------------------------DHIAFALAEVISRDYISDFMNCDFEVVGRSMKMLFVIIKASDSVLHRFLMSAEMEPFFATSWLLTWFAHDLQYISDAARLFDAILCSHPLFIYYLCAAYVIHLRNEILAAECDFSGIHDVLVRAP 260          
BLAST of mRNA_P-wetherbeei_contig6387.1.3 vs. uniprot
Match: A0A8K1CLV7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CLV7_PYTOL)

HSP 1 Score: 128 bits (321), Expect = 3.690e-28
Identity = 104/371 (28.03%), Postives = 147/371 (39.62%), Query Frame = 1
Query:  103 PSEGVSDL-EEIRELAWAPRGYRDHGVRMRVWPKLLGLD--TEALEEPRACMTQ---PHESTDQIDRDVQRSFTQYMRSSRWNAKELEALREEMFVVINAIVRKYDGILHYFQGFHDVIGVFLLVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVPAGVAPDVSPSPFWGVLAANGASPASTESSQGSGSSSGKVSPGRTAEGRLTSPDRMVEATVFALAEQSSVYFMRDCMRDSFRPVSKVLELLPVLLGRFAPEAQAFIAGAEVGPFYALPWYITWFSHDVPRLSDAARIFDALLASHPLMVLYVCAALVAHHADELLRCESEFASVHGFLASLPQDRDRHAAAAGMAV 1197
            P + V +L +E+RELA+AP G+  + +R  +WP LLG         E  A  T+    H    QI++D+ RS   Y   S     E  A R ++  +INA++ + D  L+Y+QG+HDV  VFLLV                                                                                                         + +   F   +  S  + R+ MR SF        LL  +L     E  A I  + V PF+ALPW ITWF+H++ R SD ARI+D L+ SHPL VLY+ AA+V      +L+ E +F ++HGFLA LP+  D     A  AV
Sbjct:   51 PDDQVDELFQELRELAFAPFGFVSNELRQSIWPVLLGFHGVKTVHVEHEAHYTRGNAEHRDDQQIEKDILRSLWHYDVVSNIRESERRAKRRQLTHMINAVLNQ-DPELYYYQGYHDVSAVFLLV---------------------------------------------------------------------------------------------------------LGDQLAFHALKAVSGTYQREVMRKSFAMTMHATRLLFPILEAEDEELFAHIQQSGVEPFFALPWMITWFAHELKRFSDIARIYDVLVLSHPLFVLYLGAAVVLESRQRVLKTECDFGTLHGFLAKLPRTMDVEKVIAKAAV 315          
BLAST of mRNA_P-wetherbeei_contig6387.1.3 vs. uniprot
Match: A0A484DQH1_BRELC (Rab-GAP TBC domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DQH1_BRELC)

HSP 1 Score: 120 bits (300), Expect = 1.970e-25
Identity = 95/364 (26.10%), Postives = 137/364 (37.64%), Query Frame = 1
Query:   88 DAWIAPSEGVSD-LEEIRELAWAPRGYRDHGVRMRVWPKLLG---LDTEALEEPRA---CMTQPHESTDQIDRDVQRSFTQYMRSSRWNAKELEALREEMFVVINAIVRKYDGILHYFQGFHDVIGVFLLVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVPAGVAPDVSPSPFWGVLAANGASPASTESSQGSGSSSGKVSPGRTAEGRLTSPDRMVEATVFALAEQSSVYFMRDCMRDSFRPVSKVLELLPVLLGRFAPEAQAFIAGAEVGPFYALPWYITWFSHDVPRLSDAARIFDALLASHPLMVLYVCAALVAHHADELLRCESEFASVHGFLASLPQ 1158
            D  +A  E + +   E+R LA  P G   +  R  +WP LLG   L + ++E+P+A        H   +Q+++DV+RS   Y         E  A R  +  VI  ++   D  L YFQG+HD++ VFLL                                                                                                  G  TS         F   E  S  + R+ MR  F  V     LL  LL     +    +  + V P++ALPW ITWFSH + R  D AR++D  L +HPL  LYV A +V    +++LRCE +F ++HG L++LPQ
Sbjct:   50 DGNVAAVEDLDECFREVRRLAITPYGLTSNEFRRSLWPFLLGHYTLASSSVEDPKAFEKTYVTDHRDAEQLEKDVERSLWHYDVVQGLKESERYAKRRALTQVILTVLSANDD-LFYFQGYHDIVSVFLLTL------------------------------------------------------------------------------------------------GYSTS--------TFHAVETVSQTYQREPMRSGFEIVMATTRLLFPLLDAADEQLFQHLRASSVEPYFALPWIITWFSHQLTRFGDVARLYDVFLVTHPLFSLYVSAGVVLEAREKILRCERDFGTMHGMLSNLPQ 308          
BLAST of mRNA_P-wetherbeei_contig6387.1.3 vs. uniprot
Match: A0A6H5JQF1_9PHAE (Rab-GAP TBC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQF1_9PHAE)

HSP 1 Score: 120 bits (302), Expect = 3.710e-25
Identity = 57/115 (49.57%), Postives = 80/115 (69.57%), Query Frame = 1
Query:  121 DLEEIRELAWAPRGYRDHGVRMRVWPKLLGLDTEALEEP--RACMTQPHESTDQIDRDVQRSFTQYMRSSRWNAKELEALREEMFVVINAIVRKYDGILHYFQGFHDVIGVFLLV 459
            DLE++R LAW   GY+   VRM+ WPKLL LD  +L++   R  +  PH  TDQI RD+ RS T ++   +W  + L++ R+++  VINA+VRKYDG+L+Y+QGFHDV+ V LLV
Sbjct:  127 DLEKLRNLAWEKGGYQTDEVRMKAWPKLLCLDRHSLQDLDFRHHLETPHPMTDQIQRDIDRSLTHFLHIRKWKRQRLQSKRKKLRDVINAVVRKYDGVLNYYQGFHDVVSVLLLV 241          
BLAST of mRNA_P-wetherbeei_contig6387.1.3 vs. uniprot
Match: A0A812SRF2_SYMMI (Tbc1d20 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812SRF2_SYMMI)

HSP 1 Score: 117 bits (292), Expect = 3.080e-24
Identity = 86/351 (24.50%), Postives = 134/351 (38.18%), Query Frame = 1
Query:  121 DLEEIRELAWAPRGYRDHGVRMRVWPKLLGLDTEALEEPRACMTQPHESTDQIDRDVQRSFTQYMRSSRWNAKELEALREEMFVVINAIVRKYDGILHYFQGFHDVIGVFLLVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVPAGVAPDVSPSPFWGVLAANGASPASTESSQGSGSSSGKVSPGRTAEGRLTSPDRMVEATVFALAEQSSVYFMRDCMRDSFRPVSKVLELLPVLLGRFAPEAQAFIAGAEVGPFYALPWYITWFSHDVPRLSDAARIFDALLASHPLMVLYVCAALVAHHADELLRCESEFASVHGFLASLPQDRDRH 1173
            D + + +++    G+  + +R RVWPKLLG++   L + R  ++  H    QI  DV RSF     +  W+ + L   R  +  +I A++ ++    +YFQGFHD++ V +LV                                                                                                            A  +A  E     ++ D MR     +SK ++L+ VL+         F+      P++A  W ITWFSHD+  L  AAR+FD L+ S P    Y+CAALV HH DE+LR E +F++VH FL  + +  + H
Sbjct:   18 DTDRLIKISRMGGGFVTNALRSRVWPKLLGINRYVLPDYRKLVS-VHRDDRQISCDVDRSFWSLDVAKNWSERRLHRKRALLSDIITAVLCRHSK-YYYFQGFHDIVSVLMLVFND--------------------------------------------------------------------------------------------------------NALAYAATEVLCDKYLVDFMRKDXSSLSKTMKLILVLVRSADAPLADFLDECGTEPYFATSWLITWFSHDIRTLQHAARMFDVLICSPPEYCFYLCAALVLHHRDEILRLEPDFSTVHDFLTRIWKRNEDH 262          
BLAST of mRNA_P-wetherbeei_contig6387.1.3 vs. uniprot
Match: W2PVN5_PHYPN (Rab-GAP TBC domain-containing protein n=7 Tax=Phytophthora parasitica TaxID=4792 RepID=W2PVN5_PHYPN)

HSP 1 Score: 114 bits (284), Expect = 6.650e-24
Identity = 89/351 (25.36%), Postives = 128/351 (36.47%), Query Frame = 1
Query:  124 LEEIRELAWAPRGYRDHGVRMRVWPKLLGLDT---EALEEPRACMTQPHESTDQIDRDVQRSFTQYMRSSRWNAKELEALREEMFVVINAIVRKYDGILHYFQGFHDVIGVFLLVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVPAGVAPDVSPSPFWGVLAANGASPASTESSQGSGSSSGKVSPGRTAEGRLTSPDRMVEATVFALAEQSSVYFMRDCMRDSFRPVSKVLELLPVLLGRFAPEAQAFIAGAEVGPFYALPWYITWFSHDVPRLSDAARIFDALLASHPLMVLYVCAALVAHHADELLRCESEFASVHGFLASLPQDRD 1167
              E+R LA  P+G      R   WP LLG+D      L        + H    Q+++DV+RS   Y    R    +  + R  +  +I  ++   D  L YFQG+HD++ VFLL                                                                                    G+S                     + T+ A+   S  Y  R+ MR  F  V +   LL  LL          +  + V PF+ALPW ITWF+H + R  D AR++D  L +HPL  LYV A +V    +++LRCE +F ++HG L+SLP   D
Sbjct:   60 FHEVRRLAITPKGLVSEEFRREAWPFLLGVDRLTQNGLSTTGNSSAEAHRDAAQVEKDVERSLWHYDVLQRIKESDRRSKRRALTQIILGVLNANDE-LFYFQGYHDIVSVFLLTL----------------------------------------------------------------------------------GNS---------------------KNTMQAVQNVSETY-QREPMRSGFEQVMETTRLLFPLLDAADELLFQHLHASGVEPFFALPWMITWFAHQLKRFGDVARLYDVFLVTHPLFSLYVSAGVVLEAREKILRCERDFGTIHGMLSSLPLSMD 305          
BLAST of mRNA_P-wetherbeei_contig6387.1.3 vs. uniprot
Match: W2PYC5_PHYPN (Rab-GAP TBC domain-containing protein n=10 Tax=Phytophthora parasitica TaxID=4792 RepID=W2PYC5_PHYPN)

HSP 1 Score: 114 bits (284), Expect = 1.430e-23
Identity = 89/351 (25.36%), Postives = 128/351 (36.47%), Query Frame = 1
Query:  124 LEEIRELAWAPRGYRDHGVRMRVWPKLLGLDT---EALEEPRACMTQPHESTDQIDRDVQRSFTQYMRSSRWNAKELEALREEMFVVINAIVRKYDGILHYFQGFHDVIGVFLLVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVPAGVAPDVSPSPFWGVLAANGASPASTESSQGSGSSSGKVSPGRTAEGRLTSPDRMVEATVFALAEQSSVYFMRDCMRDSFRPVSKVLELLPVLLGRFAPEAQAFIAGAEVGPFYALPWYITWFSHDVPRLSDAARIFDALLASHPLMVLYVCAALVAHHADELLRCESEFASVHGFLASLPQDRD 1167
              E+R LA  P+G      R   WP LLG+D      L        + H    Q+++DV+RS   Y    R    +  + R  +  +I  ++   D  L YFQG+HD++ VFLL                                                                                    G+S                     + T+ A+   S  Y  R+ MR  F  V +   LL  LL          +  + V PF+ALPW ITWF+H + R  D AR++D  L +HPL  LYV A +V    +++LRCE +F ++HG L+SLP   D
Sbjct:   60 FHEVRRLAITPKGLVSEEFRREAWPFLLGVDRLTQNGLSTTGNSSAEAHRDAAQVEKDVERSLWHYDVLQRIKESDRRSKRRALTQIILGVLNANDE-LFYFQGYHDIVSVFLLTL----------------------------------------------------------------------------------GNS---------------------KNTMQAVQNVSETY-QREPMRSGFEQVMETTRLLFPLLDAADELLFQHLHASGVEPFFALPWMITWFAHQLKRFGDVARLYDVFLVTHPLFSLYVSAGVVLEAREKILRCERDFGTIHGMLSSLPLSMD 305          
BLAST of mRNA_P-wetherbeei_contig6387.1.3 vs. uniprot
Match: W2PXN1_PHYPN (Rab-GAP TBC domain-containing protein n=8 Tax=Phytophthora TaxID=4783 RepID=W2PXN1_PHYPN)

HSP 1 Score: 114 bits (284), Expect = 2.060e-23
Identity = 89/351 (25.36%), Postives = 128/351 (36.47%), Query Frame = 1
Query:  124 LEEIRELAWAPRGYRDHGVRMRVWPKLLGLDT---EALEEPRACMTQPHESTDQIDRDVQRSFTQYMRSSRWNAKELEALREEMFVVINAIVRKYDGILHYFQGFHDVIGVFLLVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVPAGVAPDVSPSPFWGVLAANGASPASTESSQGSGSSSGKVSPGRTAEGRLTSPDRMVEATVFALAEQSSVYFMRDCMRDSFRPVSKVLELLPVLLGRFAPEAQAFIAGAEVGPFYALPWYITWFSHDVPRLSDAARIFDALLASHPLMVLYVCAALVAHHADELLRCESEFASVHGFLASLPQDRD 1167
              E+R LA  P+G      R   WP LLG+D      L        + H    Q+++DV+RS   Y    R    +  + R  +  +I  ++   D  L YFQG+HD++ VFLL                                                                                    G+S                     + T+ A+   S  Y  R+ MR  F  V +   LL  LL          +  + V PF+ALPW ITWF+H + R  D AR++D  L +HPL  LYV A +V    +++LRCE +F ++HG L+SLP   D
Sbjct:   60 FHEVRRLAITPKGLVSEEFRREAWPFLLGVDRLTQNGLSTTGNSSAEAHRDAAQVEKDVERSLWHYDVLQRIKESDRRSKRRALTQIILGVLNANDE-LFYFQGYHDIVSVFLLTL----------------------------------------------------------------------------------GNS---------------------KNTMQAVQNVSETY-QREPMRSGFEQVMETTRLLFPLLDAADELLFQHLHASGVEPFFALPWMITWFAHQLKRFGDVARLYDVFLVTHPLFSLYVSAGVVLEAREKILRCERDFGTIHGMLSSLPLSMD 305          
BLAST of mRNA_P-wetherbeei_contig6387.1.3 vs. uniprot
Match: D0MXP5_PHYIT (Rab-GAP TBC domain-containing protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0MXP5_PHYIT)

HSP 1 Score: 113 bits (282), Expect = 2.640e-23
Identity = 94/365 (25.75%), Postives = 132/365 (36.16%), Query Frame = 1
Query:   88 DAWIAPSEGVSD-LEEIRELAWAPRGYRDHGVRMRVWPKLLGLDTEALEEPRAC----MTQPHESTDQIDRDVQRSFTQYMRSSRWNAKELEALREEMFVVINAIVRKYDGILHYFQGFHDVIGVFLLVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVPAGVAPDVSPSPFWGVLAANGASPASTESSQGSGSSSGKVSPGRTAEGRLTSPDRMVEATVFALAEQSSVYFMRDCMRDSFRPVSKVLELLPVLLGRFAPEAQAFIAGAEVGPFYALPWYITWFSHDVPRLSDAARIFDALLASHPLMVLYVCAALVAHHADELLRCESEFASVHGFLASLPQDRD 1167
            D+ +A  E   +   E+R LA  P+G      R  +WP LLG+  EA    R      + + H    Q+++DV+RS   Y         E  A R  +  +I   +   D  L YFQG+HD++ VFLL                                                                       G+SP                                   T     +  S  + R+ MR  F  V     LL  LL          +  + V PF+ALPW ITWF+H + R  D  R+FD  L +HPL  LYV A +V    D++LRCES+F ++HG L++LP   D
Sbjct:   47 DSSVATVEDRDECFREVRRLAITPKGLVSDEFRRDLWPFLLGIG-EATHNTRPVTNSDLVEVHRDAAQVEKDVERSLWHYDVLQGIKESERRAKRRALTQIILGALSANDE-LFYFQGYHDIVSVFLLTL---------------------------------------------------------------------GSSP-----------------------------------TTMQAVQNVSETYQREPMRPGFEQVMATTRLLFPLLDAADELLFQHLRASGVEPFFALPWMITWFAHQLKRFGDVKRLFDVFLVTHPLFSLYVSAGVVLEARDKILRCESDFGTMHGMLSNLPLSMD 305          
BLAST of mRNA_P-wetherbeei_contig6387.1.3 vs. uniprot
Match: A0A2G5B814_COERN (RabGAP/TBC (Fragment) n=1 Tax=Coemansia reversa (strain ATCC 12441 / NRRL 1564) TaxID=763665 RepID=A0A2G5B814_COERN)

HSP 1 Score: 110 bits (275), Expect = 4.450e-23
Identity = 48/119 (40.34%), Postives = 76/119 (63.87%), Query Frame = 1
Query:  802 AEQSSVYFMRDCMRDSFRPVSKVLELLPVLLGRFAPEAQAFIAGAEVGPFYALPWYITWFSHDVPRLSDAARIFDALLASHPLMVLYVCAALVAHHADELLRCESEFASVHGFLASLPQ 1158
            A  ++++F+RD M  S   V + L+LL VLL +  P   A +   +V PF+ + W +TWF+HDV   +D  RI+D L+ S P+ V+Y+ AA+VAH+  E+L  E +FA++H  L +LP+
Sbjct:  130 ARMAALFFVRDAMGSSLEDVMQQLQLLYVLLEQTCPAVHALLTDVDVPPFFGISWVLTWFAHDVDTFADICRIYDFLIVSPPMQVVYMAAAMVAHNQHEILAYERDFAAIHSGLVALPR 248          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6387.1.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3MG22_9STRA3.560e-2826.09Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A8K1CLV7_PYTOL3.690e-2828.03Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A484DQH1_BRELC1.970e-2526.10Rab-GAP TBC domain-containing protein n=1 Tax=Brem... [more]
A0A6H5JQF1_9PHAE3.710e-2549.57Rab-GAP TBC domain-containing protein n=1 Tax=Ecto... [more]
A0A812SRF2_SYMMI3.080e-2424.50Tbc1d20 protein n=1 Tax=Symbiodinium microadriatic... [more]
W2PVN5_PHYPN6.650e-2425.36Rab-GAP TBC domain-containing protein n=7 Tax=Phyt... [more]
W2PYC5_PHYPN1.430e-2325.36Rab-GAP TBC domain-containing protein n=10 Tax=Phy... [more]
W2PXN1_PHYPN2.060e-2325.36Rab-GAP TBC domain-containing protein n=8 Tax=Phyt... [more]
D0MXP5_PHYIT2.640e-2325.75Rab-GAP TBC domain-containing protein n=2 Tax=Phyt... [more]
A0A2G5B814_COERN4.450e-2340.34RabGAP/TBC (Fragment) n=1 Tax=Coemansia reversa (s... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6387contigP-wetherbeei_contig6387:2..3420 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog36331.EPrPI00000023105
PFAMsRabGAP-TBC
Model size2024
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryother localisation
Exons6
Evalue1.4e-28
EggNOG OGsKOG2595@1|root,KOG2595@2759|Eukaryota,1MDDB@121069|Pythiales
Ec32 ortholog descriptionRab-GTPase-TBC domain
Ec32 orthologEc-25_002780.1
DescriptionSource PGD
Cds size1944
COG categoryT
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6387.1.3prot_P-wetherbeei_contig6387.1.3Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6387 58..3396 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186909.3602624-UTR-P-wetherbeei_contig6387:1..571683186909.3602624-UTR-P-wetherbeei_contig6387:1..57Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6387 2..57 -
1683186909.4458554-UTR-P-wetherbeei_contig6387:3396..34201683186909.4458554-UTR-P-wetherbeei_contig6387:3396..3420Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6387 3397..3420 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186909.3724396-CDS-P-wetherbeei_contig6387:57..5591683186909.3724396-CDS-P-wetherbeei_contig6387:57..559Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6387 58..559 -
1683186909.3869715-CDS-P-wetherbeei_contig6387:747..11071683186909.3869715-CDS-P-wetherbeei_contig6387:747..1107Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6387 748..1107 -
1683186909.4045975-CDS-P-wetherbeei_contig6387:1509..16761683186909.4045975-CDS-P-wetherbeei_contig6387:1509..1676Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6387 1510..1676 -
1683186909.4156318-CDS-P-wetherbeei_contig6387:1911..25241683186909.4156318-CDS-P-wetherbeei_contig6387:1911..2524Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6387 1912..2524 -
1683186909.4259355-CDS-P-wetherbeei_contig6387:2761..29501683186909.4259355-CDS-P-wetherbeei_contig6387:2761..2950Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6387 2762..2950 -
1683186909.436308-CDS-P-wetherbeei_contig6387:3283..33961683186909.436308-CDS-P-wetherbeei_contig6387:3283..3396Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6387 3284..3396 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6387.1.3

>prot_P-wetherbeei_contig6387.1.3 ID=prot_P-wetherbeei_contig6387.1.3|Name=mRNA_P-wetherbeei_contig6387.1.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=648bp
MARSRKGRRCPLEGSETANAGDAWIAPSEGVSDLEEIRELAWAPRGYRDH
GVRMRVWPKLLGLDTEALEEPRACMTQPHESTDQIDRDVQRSFTQYMRSS
RWNAKELEALREEMFVVINAIVRKYDGILHYFQGFHDVIGVFLLVAAAAA
DDAAANKADVAAAAYTAALAPARRRASGSGGAVTTGAAAAAAASVPAGVA
PDVSPSPFWGVLAANGASPASTESSQGSGSSSGKVSPGRTAEGRLTSPDR
MVEATVFALAEQSSVYFMRDCMRDSFRPVSKVLELLPVLLGRFAPEAQAF
IAGAEVGPFYALPWYITWFSHDVPRLSDAARIFDALLASHPLMVLYVCAA
LVAHHADELLRCESEFASVHGFLASLPQDRDRHAAAAGMAVDDHFCDAAA
DNGRERGSGRSGSGGGSGDGGGRRSGGKAGQDAAATGEQDTQAAMWEAVL
AEAHAMFQEMPPEQLLGRAKRPLRNELAEHSLKVLSHPPFWEMGIGTAEW
VLAERGKLANDIARVGRGKVRRAIAAGLVAIGDATGVSSRATSAQWRRAA
AVVATTADGKTAWWQSGFGGGGFGGSGFGGGGGGVISGGVRAWVLTSVAG
ISVVAVTVVLVRAALTADDARFVVWMRQMLDSTTLRSIATMSGGNAA*
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mRNA from alignment at P-wetherbeei_contig6387:2..3420-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6387.1.3 ID=mRNA_P-wetherbeei_contig6387.1.3|Name=mRNA_P-wetherbeei_contig6387.1.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=3419bp|location=Sequence derived from alignment at P-wetherbeei_contig6387:2..3420- (Phaeothamnion wetherbeei SAG_119_79)
GAAAAAGTCAAACAAACGGAAAGAATGGCGCGTTCGCGCAAAGGCCGAAG GTGCCCGCTCGAAGGGTCAGAAACTGCCAACGCGGGAGACGCCTGGATCG CGCCATCCGAAGGTGTTTCGGACCTCGAGGAGATTAGGTGAGGGCCTTGA ACCATCTTTACTGCGTGGCTTAGTCTGTAAAGAGTACATAGATTCTTGGA AGCACTATGGGCTGATTAATCCTTTTGTTTTCAATGGCAGTTGCAGAATT GATGCGTTTCGACTCGTCCCCAAACTGATGCAGGCTAGCAGTGCAGATCC GGCGCGGTGATTCTCCGGATGAATCGCTGTTAATAATCTCAGCATATCTT TGAGTCAGACAGGCCTGAAGCTCGGGAATTGCCGTACTGAATCAATAATT GAGAGAGACACCCTCCGCCGGAAATATCTCTGTAATTTATCTTGCCACCC TCTGTCTACCAAACGTTCAGAGAGCTGGCATGGGCGCCTCGCGGCTACCG CGATCATGGCGTCAGGATGCGCGTCTGGCCGAAGCTGTTGGGCCTCGATA CAGAAGCACTGGAAGAGCCACGGGCGTGCATGACACAGCCGCATGAGTCC ACCGATCAGATCGATCGCGACGTCCAACGTAGCTTCACGCAGTACATGCG TTCATCTCGGTGAGTTCTCATTCGAAACTCAATCTGTCTTGGCTTTCCGG GGTATATTTAGATATGCCATTTCAAAGGAAAATACTACTGCAGTTCCAAC AGCCTTTATTTATCTTGTGAGTCAACTACGTCGACATTTCCTGCAGATAC TGCATGTAGGAGCCCAATTATGGCGAGAAGTCACTCAGTTCTCTTATCTG CAGCATTAACCTCCTTTGCTCGTGTTTCCCCCTCTCATGCAATCAGGTGG AACGCCAAAGAGCTGGAGGCGCTGCGAGAGGAAATGTTCGTGGTGATAAA TGCCATCGTCCGAAAGTACGACGGCATTCTCCACTACTTCCAAGGCTTTC ACGACGTCATAGGCGTCTTCTTGCTCGTCGCTGCCGCCGCCGCCGACGAT GCCGCCGCCAATAAAGCCGATGTTGCTGCCGCCGCTTACACTGCGGCGCT TGCTCCGGCGAGGAGGCGAGCTTCTGGAAGCGGCGGCGCGGTGACGACGG GGGCGGCGGCAGCGGCGGCCGCATCGGTACCTGCGGGGGTGGCGCCGGAC GTCTCTCCTTCACCGTTTTGGGGGGTCTTGGCTGCCAACGGCGCCTCCCC GGCGTCAACTGAGTCTAGCCAAGGTAGTGGCAGCAGCAGCGGGAAGGTCA GCCCCGGGCGGACGGCTGAGGGCAGGCTGACGTCGCCGGACAGGATGGTC GAGGCCACCGTGTTTGCGCTGGCAGAGCAATCTTCCGTGTACTTCATGCG CGATTGCATGAGGGACAGCTTTCGGCCCGTCTCCAAGGTCCTGGAGCTGC TGCCGGTGCTGCTGGGGCGCTTCGCTCCCGAGGCGCAGGCTTTCATCGCT GGAGCCGAGGCAAGTGAAGTGTTACGGCCGGGATGGAAGGGCGGGAAAGA GAGAGAGAGAGAGAAACGGCAACATCGCTTACTGGGAAAAGGAGAAGACG AGATTCAACGCGCGATTGTGGTGCCTGTTTGAATGCCAATGAGTCTTCAA TATTGTCCGAAGGCGCCTTTAATGGGCATGGTCCTCTTTCCAGTTCTCAT CCTTAGTTTCCGGCCGCTGCTCTTACGGCGCGCCGCCATAACAGGTGGGG CCGTTCTACGCGCTGCCGTGGTACATCACGTGGTTCTCGCACGATGTGCC GCGGCTCAGCGACGCGGCGCGGATCTTCGACGCGCTGCTGGCGTCGCACC CGCTCATGGTGCTCTACGTCTGCGCCGCGCTCGTCGCCCACCACGCCGAC GAGCTGCTCCGGTGAGGCAAAAGGAGTGGTGACGACACGACGGCGGCGGC GGCAGCGGCGGCAGCGGAGCGACGGCGACTGCAGCGTTTTAGTGGTTGGT GATGGCGGCAGCATGCGCTGGCGGCGTTAGTGGCGGCGATGGCGGAGACG ACGACGGTGATGACGGCGGCTGCGGCGGCAACGACTGCGGCTGAGGCGGC GGGATCGTAGCGTGGCTGGCGGGCATGAGTGGCACGAGTGATGATGCGTG GGAGCGGCGGCTGACTACGAATTCGCACCTCGAATCTCATGCTCCAATTC GCTTTCCTTTCTCCGCTCGCCTTTAAGCTCTCGGTCGAAGAAGCTTTTCC TTGACACCACGCCATCTCATTTTCCACCATCCATTCTCTCTGTGCTCTAC TCGTATCTGTAAGGTGCGAGAGCGAGTTTGCCAGCGTGCACGGCTTTCTC GCCTCGCTGCCGCAAGACCGCGACCGGCACGCCGCCGCCGCCGGAATGGC TGTCGACGACCATTTTTGCGACGCCGCGGCGGACAACGGACGGGAGCGAG GGAGCGGTCGTTCTGGGAGTGGCGGCGGCAGCGGTGACGGCGGCGGGCGG CGCAGCGGCGGCAAGGCGGGGCAGGATGCCGCTGCGACCGGCGAGCAGGA TACCCAGGCAGCAATGTGGGAGGCCGTGCTGGCGGAGGCGCACGCCATGT TTCAGGAGATGCCACCCGAACAGCTGCTGGGGCGAGCCAAGCGGCCGCTG CGCAACGAGCTCGCCGAGCACAGGTGGGCTGGGAGACGCCGCGGGTGCTT CGTCTTCTTTGCAGCGGTAGCTGCAACGGAGACGGTTGGCGCCTGGTTGA CTCTCGAGGGGGAAGTCTGAAGCTCTGAATGAAACCTTTCATTTCTGTCT CATCTCTTCCTTCGCATTTCCCCCTTTTATTTTTTCGCAACCTCCTCCGG GCTACCATCAGCCTCAAGGTGCTTTCTCATCCACCGTTTTGGGAGATGGG CATCGGAACAGCGGAATGGGTGCTAGCCGAGCGCGGAAAGCTCGCCAACG ACATCGCCAGAGTCGGCCGGGGTAAGGTGCGCCGTGCCATCGCTGCCGGT TTAGTCGCCATCGGCGACGCCACTGGCGTCAGCAGCAGGGCTACCTCCGC GCAATGGCGGCGCGCGGCCGCCGTGGTCGCCACCACCGCCGATGGCAAGA CGGCGTGGTGGCAAAGCGGCTTCGGCGGCGGCGGCTTCGGCGGCAGCGGC TTCGGCGGCGGTGGCGGCGGTGTCATCTCCGGTGGGGTCAGAGCGTGGGT CCTAACCAGCGTTGCGGGGATATCAGTGGTAGCCGTGACGGTGGTTCTCG TGCGGGCGGCACTAACCGCCGACGACGCGCGCTTTGTGGTGTGGATGCGG CAGATGCTGGACTCCACCACATTGCGGTCTATCGCGACGATGTCTGGCGG CAATGCCGCGTGAAGTTGTCGCTGCTTGGTGCCGCGGGCGTTTTTGCTGT GGGCGGGCGCATGGCAGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6387:2..3420-

>mRNA_P-wetherbeei_contig6387.1.3 ID=mRNA_P-wetherbeei_contig6387.1.3|Name=mRNA_P-wetherbeei_contig6387.1.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1944bp|location=Sequence derived from alignment at P-wetherbeei_contig6387:2..3420- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGCGTTCGCGCAAAGGCCGAAGGTGCCCGCTCGAAGGGTCAGAAAC
TGCCAACGCGGGAGACGCCTGGATCGCGCCATCCGAAGGTGTTTCGGACC
TCGAGGAGATTAGAGAGCTGGCATGGGCGCCTCGCGGCTACCGCGATCAT
GGCGTCAGGATGCGCGTCTGGCCGAAGCTGTTGGGCCTCGATACAGAAGC
ACTGGAAGAGCCACGGGCGTGCATGACACAGCCGCATGAGTCCACCGATC
AGATCGATCGCGACGTCCAACGTAGCTTCACGCAGTACATGCGTTCATCT
CGGTGGAACGCCAAAGAGCTGGAGGCGCTGCGAGAGGAAATGTTCGTGGT
GATAAATGCCATCGTCCGAAAGTACGACGGCATTCTCCACTACTTCCAAG
GCTTTCACGACGTCATAGGCGTCTTCTTGCTCGTCGCTGCCGCCGCCGCC
GACGATGCCGCCGCCAATAAAGCCGATGTTGCTGCCGCCGCTTACACTGC
GGCGCTTGCTCCGGCGAGGAGGCGAGCTTCTGGAAGCGGCGGCGCGGTGA
CGACGGGGGCGGCGGCAGCGGCGGCCGCATCGGTACCTGCGGGGGTGGCG
CCGGACGTCTCTCCTTCACCGTTTTGGGGGGTCTTGGCTGCCAACGGCGC
CTCCCCGGCGTCAACTGAGTCTAGCCAAGGTAGTGGCAGCAGCAGCGGGA
AGGTCAGCCCCGGGCGGACGGCTGAGGGCAGGCTGACGTCGCCGGACAGG
ATGGTCGAGGCCACCGTGTTTGCGCTGGCAGAGCAATCTTCCGTGTACTT
CATGCGCGATTGCATGAGGGACAGCTTTCGGCCCGTCTCCAAGGTCCTGG
AGCTGCTGCCGGTGCTGCTGGGGCGCTTCGCTCCCGAGGCGCAGGCTTTC
ATCGCTGGAGCCGAGGTGGGGCCGTTCTACGCGCTGCCGTGGTACATCAC
GTGGTTCTCGCACGATGTGCCGCGGCTCAGCGACGCGGCGCGGATCTTCG
ACGCGCTGCTGGCGTCGCACCCGCTCATGGTGCTCTACGTCTGCGCCGCG
CTCGTCGCCCACCACGCCGACGAGCTGCTCCGGTGCGAGAGCGAGTTTGC
CAGCGTGCACGGCTTTCTCGCCTCGCTGCCGCAAGACCGCGACCGGCACG
CCGCCGCCGCCGGAATGGCTGTCGACGACCATTTTTGCGACGCCGCGGCG
GACAACGGACGGGAGCGAGGGAGCGGTCGTTCTGGGAGTGGCGGCGGCAG
CGGTGACGGCGGCGGGCGGCGCAGCGGCGGCAAGGCGGGGCAGGATGCCG
CTGCGACCGGCGAGCAGGATACCCAGGCAGCAATGTGGGAGGCCGTGCTG
GCGGAGGCGCACGCCATGTTTCAGGAGATGCCACCCGAACAGCTGCTGGG
GCGAGCCAAGCGGCCGCTGCGCAACGAGCTCGCCGAGCACAGCCTCAAGG
TGCTTTCTCATCCACCGTTTTGGGAGATGGGCATCGGAACAGCGGAATGG
GTGCTAGCCGAGCGCGGAAAGCTCGCCAACGACATCGCCAGAGTCGGCCG
GGGTAAGGTGCGCCGTGCCATCGCTGCCGGTTTAGTCGCCATCGGCGACG
CCACTGGCGTCAGCAGCAGGGCTACCTCCGCGCAATGGCGGCGCGCGGCC
GCCGTGGTCGCCACCACCGCCGATGGCAAGACGGCGTGGTGGCAAAGCGG
CTTCGGCGGCGGCGGCTTCGGCGGCAGCGGCTTCGGCGGCGGTGGCGGCG
GTGTCATCTCCGGTGGGGTCAGAGCGTGGGTCCTAACCAGCGTTGCGGGG
ATATCAGTGGTAGCCGTGACGGTGGTTCTCGTGCGGGCGGCACTAACCGC
CGACGACGCGCGCTTTGTGGTGTGGATGCGGCAGATGCTGGACTCCACCA
CATTGCGGTCTATCGCGACGATGTCTGGCGGCAATGCCGCGTGA
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