mRNA_P-wetherbeei_contig6387.1.3 (mRNA) Phaeothamnion wetherbeei SAG_119_79
|
Overview
Homology
BLAST of mRNA_P-wetherbeei_contig6387.1.3 vs. uniprot
Match: A0A7S3MG22_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MG22_9STRA) HSP 1 Score: 128 bits (322), Expect = 3.560e-28 Identity = 90/345 (26.09%), Postives = 144/345 (41.74%), Query Frame = 1
Query: 121 DLEEIRELAWAPRGYRDHGVRMRVWPKLLGLDTEALEEPRACMTQPHESTDQIDRDVQRSFTQYMRSSRWNAKELEALREEMFVVINAIVRKYDGILHYFQGFHDVIGVFLLVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVPAGVAPDVSPSPFWGVLAANGASPASTESSQGSGSSSGKVSPGRTAEGRLTSPDRMVEATVFALAEQSSVYFMRDCMRDSFRPVSKVLELLPVLLGRFAPEAQAFIAGAEVGPFYALPWYITWFSHDVPRLSDAARIFDALLASHPLMVLYVCAALVAHHADELLRCESEFASVHGFLASLP 1155
DL+ +R+L+ + G+ ++ +R RVWPKLLG++ + + R+ + PH Q+ DV+RS + ++ W E R+ + ++ AI+ + + L+Y+QGFHDV VFLLV + FALAE S ++ D M F V + +++L V++ F+ AE+ PF+A W +TWF+HD+ +SDAAR+FDA+L SHPL + Y+CAA V H +E+L E +F+ +H L P
Sbjct: 22 DLKALRKLSRSEGGFINNQLRARVWPKLLGVNRFDIPDYRSFID-PHRDDSQVKVDVERSLWKIDKTVTWRDTFREDRRKALCDIMMAILCR-NADLYYYQGFHDVTSVFLLVLDD--------------------------------------------------------------------------------------------------------DHIAFALAEVISRDYISDFMNCDFEVVGRSMKMLFVIIKASDSVLHRFLMSAEMEPFFATSWLLTWFAHDLQYISDAARLFDAILCSHPLFIYYLCAAYVIHLRNEILAAECDFSGIHDVLVRAP 260
BLAST of mRNA_P-wetherbeei_contig6387.1.3 vs. uniprot
Match: A0A8K1CLV7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CLV7_PYTOL) HSP 1 Score: 128 bits (321), Expect = 3.690e-28 Identity = 104/371 (28.03%), Postives = 147/371 (39.62%), Query Frame = 1
Query: 103 PSEGVSDL-EEIRELAWAPRGYRDHGVRMRVWPKLLGLD--TEALEEPRACMTQ---PHESTDQIDRDVQRSFTQYMRSSRWNAKELEALREEMFVVINAIVRKYDGILHYFQGFHDVIGVFLLVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVPAGVAPDVSPSPFWGVLAANGASPASTESSQGSGSSSGKVSPGRTAEGRLTSPDRMVEATVFALAEQSSVYFMRDCMRDSFRPVSKVLELLPVLLGRFAPEAQAFIAGAEVGPFYALPWYITWFSHDVPRLSDAARIFDALLASHPLMVLYVCAALVAHHADELLRCESEFASVHGFLASLPQDRDRHAAAAGMAV 1197
P + V +L +E+RELA+AP G+ + +R +WP LLG E A T+ H QI++D+ RS Y S E A R ++ +INA++ + D L+Y+QG+HDV VFLLV + + F + S + R+ MR SF LL +L E A I + V PF+ALPW ITWF+H++ R SD ARI+D L+ SHPL VLY+ AA+V +L+ E +F ++HGFLA LP+ D A AV
Sbjct: 51 PDDQVDELFQELRELAFAPFGFVSNELRQSIWPVLLGFHGVKTVHVEHEAHYTRGNAEHRDDQQIEKDILRSLWHYDVVSNIRESERRAKRRQLTHMINAVLNQ-DPELYYYQGYHDVSAVFLLV---------------------------------------------------------------------------------------------------------LGDQLAFHALKAVSGTYQREVMRKSFAMTMHATRLLFPILEAEDEELFAHIQQSGVEPFFALPWMITWFAHELKRFSDIARIYDVLVLSHPLFVLYLGAAVVLESRQRVLKTECDFGTLHGFLAKLPRTMDVEKVIAKAAV 315
BLAST of mRNA_P-wetherbeei_contig6387.1.3 vs. uniprot
Match: A0A484DQH1_BRELC (Rab-GAP TBC domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DQH1_BRELC) HSP 1 Score: 120 bits (300), Expect = 1.970e-25 Identity = 95/364 (26.10%), Postives = 137/364 (37.64%), Query Frame = 1
Query: 88 DAWIAPSEGVSD-LEEIRELAWAPRGYRDHGVRMRVWPKLLG---LDTEALEEPRA---CMTQPHESTDQIDRDVQRSFTQYMRSSRWNAKELEALREEMFVVINAIVRKYDGILHYFQGFHDVIGVFLLVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVPAGVAPDVSPSPFWGVLAANGASPASTESSQGSGSSSGKVSPGRTAEGRLTSPDRMVEATVFALAEQSSVYFMRDCMRDSFRPVSKVLELLPVLLGRFAPEAQAFIAGAEVGPFYALPWYITWFSHDVPRLSDAARIFDALLASHPLMVLYVCAALVAHHADELLRCESEFASVHGFLASLPQ 1158
D +A E + + E+R LA P G + R +WP LLG L + ++E+P+A H +Q+++DV+RS Y E A R + VI ++ D L YFQG+HD++ VFLL G TS F E S + R+ MR F V LL LL + + + V P++ALPW ITWFSH + R D AR++D L +HPL LYV A +V +++LRCE +F ++HG L++LPQ
Sbjct: 50 DGNVAAVEDLDECFREVRRLAITPYGLTSNEFRRSLWPFLLGHYTLASSSVEDPKAFEKTYVTDHRDAEQLEKDVERSLWHYDVVQGLKESERYAKRRALTQVILTVLSANDD-LFYFQGYHDIVSVFLLTL------------------------------------------------------------------------------------------------GYSTS--------TFHAVETVSQTYQREPMRSGFEIVMATTRLLFPLLDAADEQLFQHLRASSVEPYFALPWIITWFSHQLTRFGDVARLYDVFLVTHPLFSLYVSAGVVLEAREKILRCERDFGTMHGMLSNLPQ 308
BLAST of mRNA_P-wetherbeei_contig6387.1.3 vs. uniprot
Match: A0A6H5JQF1_9PHAE (Rab-GAP TBC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQF1_9PHAE) HSP 1 Score: 120 bits (302), Expect = 3.710e-25 Identity = 57/115 (49.57%), Postives = 80/115 (69.57%), Query Frame = 1
Query: 121 DLEEIRELAWAPRGYRDHGVRMRVWPKLLGLDTEALEEP--RACMTQPHESTDQIDRDVQRSFTQYMRSSRWNAKELEALREEMFVVINAIVRKYDGILHYFQGFHDVIGVFLLV 459
DLE++R LAW GY+ VRM+ WPKLL LD +L++ R + PH TDQI RD+ RS T ++ +W + L++ R+++ VINA+VRKYDG+L+Y+QGFHDV+ V LLV
Sbjct: 127 DLEKLRNLAWEKGGYQTDEVRMKAWPKLLCLDRHSLQDLDFRHHLETPHPMTDQIQRDIDRSLTHFLHIRKWKRQRLQSKRKKLRDVINAVVRKYDGVLNYYQGFHDVVSVLLLV 241
BLAST of mRNA_P-wetherbeei_contig6387.1.3 vs. uniprot
Match: A0A812SRF2_SYMMI (Tbc1d20 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812SRF2_SYMMI) HSP 1 Score: 117 bits (292), Expect = 3.080e-24 Identity = 86/351 (24.50%), Postives = 134/351 (38.18%), Query Frame = 1
Query: 121 DLEEIRELAWAPRGYRDHGVRMRVWPKLLGLDTEALEEPRACMTQPHESTDQIDRDVQRSFTQYMRSSRWNAKELEALREEMFVVINAIVRKYDGILHYFQGFHDVIGVFLLVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVPAGVAPDVSPSPFWGVLAANGASPASTESSQGSGSSSGKVSPGRTAEGRLTSPDRMVEATVFALAEQSSVYFMRDCMRDSFRPVSKVLELLPVLLGRFAPEAQAFIAGAEVGPFYALPWYITWFSHDVPRLSDAARIFDALLASHPLMVLYVCAALVAHHADELLRCESEFASVHGFLASLPQDRDRH 1173
D + + +++ G+ + +R RVWPKLLG++ L + R ++ H QI DV RSF + W+ + L R + +I A++ ++ +YFQGFHD++ V +LV A +A E ++ D MR +SK ++L+ VL+ F+ P++A W ITWFSHD+ L AAR+FD L+ S P Y+CAALV HH DE+LR E +F++VH FL + + + H
Sbjct: 18 DTDRLIKISRMGGGFVTNALRSRVWPKLLGINRYVLPDYRKLVS-VHRDDRQISCDVDRSFWSLDVAKNWSERRLHRKRALLSDIITAVLCRHSK-YYYFQGFHDIVSVLMLVFND--------------------------------------------------------------------------------------------------------NALAYAATEVLCDKYLVDFMRKDXSSLSKTMKLILVLVRSADAPLADFLDECGTEPYFATSWLITWFSHDIRTLQHAARMFDVLICSPPEYCFYLCAALVLHHRDEILRLEPDFSTVHDFLTRIWKRNEDH 262
BLAST of mRNA_P-wetherbeei_contig6387.1.3 vs. uniprot
Match: W2PVN5_PHYPN (Rab-GAP TBC domain-containing protein n=7 Tax=Phytophthora parasitica TaxID=4792 RepID=W2PVN5_PHYPN) HSP 1 Score: 114 bits (284), Expect = 6.650e-24 Identity = 89/351 (25.36%), Postives = 128/351 (36.47%), Query Frame = 1
Query: 124 LEEIRELAWAPRGYRDHGVRMRVWPKLLGLDT---EALEEPRACMTQPHESTDQIDRDVQRSFTQYMRSSRWNAKELEALREEMFVVINAIVRKYDGILHYFQGFHDVIGVFLLVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVPAGVAPDVSPSPFWGVLAANGASPASTESSQGSGSSSGKVSPGRTAEGRLTSPDRMVEATVFALAEQSSVYFMRDCMRDSFRPVSKVLELLPVLLGRFAPEAQAFIAGAEVGPFYALPWYITWFSHDVPRLSDAARIFDALLASHPLMVLYVCAALVAHHADELLRCESEFASVHGFLASLPQDRD 1167
E+R LA P+G R WP LLG+D L + H Q+++DV+RS Y R + + R + +I ++ D L YFQG+HD++ VFLL G+S + T+ A+ S Y R+ MR F V + LL LL + + V PF+ALPW ITWF+H + R D AR++D L +HPL LYV A +V +++LRCE +F ++HG L+SLP D
Sbjct: 60 FHEVRRLAITPKGLVSEEFRREAWPFLLGVDRLTQNGLSTTGNSSAEAHRDAAQVEKDVERSLWHYDVLQRIKESDRRSKRRALTQIILGVLNANDE-LFYFQGYHDIVSVFLLTL----------------------------------------------------------------------------------GNS---------------------KNTMQAVQNVSETY-QREPMRSGFEQVMETTRLLFPLLDAADELLFQHLHASGVEPFFALPWMITWFAHQLKRFGDVARLYDVFLVTHPLFSLYVSAGVVLEAREKILRCERDFGTIHGMLSSLPLSMD 305
BLAST of mRNA_P-wetherbeei_contig6387.1.3 vs. uniprot
Match: W2PYC5_PHYPN (Rab-GAP TBC domain-containing protein n=10 Tax=Phytophthora parasitica TaxID=4792 RepID=W2PYC5_PHYPN) HSP 1 Score: 114 bits (284), Expect = 1.430e-23 Identity = 89/351 (25.36%), Postives = 128/351 (36.47%), Query Frame = 1
Query: 124 LEEIRELAWAPRGYRDHGVRMRVWPKLLGLDT---EALEEPRACMTQPHESTDQIDRDVQRSFTQYMRSSRWNAKELEALREEMFVVINAIVRKYDGILHYFQGFHDVIGVFLLVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVPAGVAPDVSPSPFWGVLAANGASPASTESSQGSGSSSGKVSPGRTAEGRLTSPDRMVEATVFALAEQSSVYFMRDCMRDSFRPVSKVLELLPVLLGRFAPEAQAFIAGAEVGPFYALPWYITWFSHDVPRLSDAARIFDALLASHPLMVLYVCAALVAHHADELLRCESEFASVHGFLASLPQDRD 1167
E+R LA P+G R WP LLG+D L + H Q+++DV+RS Y R + + R + +I ++ D L YFQG+HD++ VFLL G+S + T+ A+ S Y R+ MR F V + LL LL + + V PF+ALPW ITWF+H + R D AR++D L +HPL LYV A +V +++LRCE +F ++HG L+SLP D
Sbjct: 60 FHEVRRLAITPKGLVSEEFRREAWPFLLGVDRLTQNGLSTTGNSSAEAHRDAAQVEKDVERSLWHYDVLQRIKESDRRSKRRALTQIILGVLNANDE-LFYFQGYHDIVSVFLLTL----------------------------------------------------------------------------------GNS---------------------KNTMQAVQNVSETY-QREPMRSGFEQVMETTRLLFPLLDAADELLFQHLHASGVEPFFALPWMITWFAHQLKRFGDVARLYDVFLVTHPLFSLYVSAGVVLEAREKILRCERDFGTIHGMLSSLPLSMD 305
BLAST of mRNA_P-wetherbeei_contig6387.1.3 vs. uniprot
Match: W2PXN1_PHYPN (Rab-GAP TBC domain-containing protein n=8 Tax=Phytophthora TaxID=4783 RepID=W2PXN1_PHYPN) HSP 1 Score: 114 bits (284), Expect = 2.060e-23 Identity = 89/351 (25.36%), Postives = 128/351 (36.47%), Query Frame = 1
Query: 124 LEEIRELAWAPRGYRDHGVRMRVWPKLLGLDT---EALEEPRACMTQPHESTDQIDRDVQRSFTQYMRSSRWNAKELEALREEMFVVINAIVRKYDGILHYFQGFHDVIGVFLLVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVPAGVAPDVSPSPFWGVLAANGASPASTESSQGSGSSSGKVSPGRTAEGRLTSPDRMVEATVFALAEQSSVYFMRDCMRDSFRPVSKVLELLPVLLGRFAPEAQAFIAGAEVGPFYALPWYITWFSHDVPRLSDAARIFDALLASHPLMVLYVCAALVAHHADELLRCESEFASVHGFLASLPQDRD 1167
E+R LA P+G R WP LLG+D L + H Q+++DV+RS Y R + + R + +I ++ D L YFQG+HD++ VFLL G+S + T+ A+ S Y R+ MR F V + LL LL + + V PF+ALPW ITWF+H + R D AR++D L +HPL LYV A +V +++LRCE +F ++HG L+SLP D
Sbjct: 60 FHEVRRLAITPKGLVSEEFRREAWPFLLGVDRLTQNGLSTTGNSSAEAHRDAAQVEKDVERSLWHYDVLQRIKESDRRSKRRALTQIILGVLNANDE-LFYFQGYHDIVSVFLLTL----------------------------------------------------------------------------------GNS---------------------KNTMQAVQNVSETY-QREPMRSGFEQVMETTRLLFPLLDAADELLFQHLHASGVEPFFALPWMITWFAHQLKRFGDVARLYDVFLVTHPLFSLYVSAGVVLEAREKILRCERDFGTIHGMLSSLPLSMD 305
BLAST of mRNA_P-wetherbeei_contig6387.1.3 vs. uniprot
Match: D0MXP5_PHYIT (Rab-GAP TBC domain-containing protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0MXP5_PHYIT) HSP 1 Score: 113 bits (282), Expect = 2.640e-23 Identity = 94/365 (25.75%), Postives = 132/365 (36.16%), Query Frame = 1
Query: 88 DAWIAPSEGVSD-LEEIRELAWAPRGYRDHGVRMRVWPKLLGLDTEALEEPRAC----MTQPHESTDQIDRDVQRSFTQYMRSSRWNAKELEALREEMFVVINAIVRKYDGILHYFQGFHDVIGVFLLVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVPAGVAPDVSPSPFWGVLAANGASPASTESSQGSGSSSGKVSPGRTAEGRLTSPDRMVEATVFALAEQSSVYFMRDCMRDSFRPVSKVLELLPVLLGRFAPEAQAFIAGAEVGPFYALPWYITWFSHDVPRLSDAARIFDALLASHPLMVLYVCAALVAHHADELLRCESEFASVHGFLASLPQDRD 1167
D+ +A E + E+R LA P+G R +WP LLG+ EA R + + H Q+++DV+RS Y E A R + +I + D L YFQG+HD++ VFLL G+SP T + S + R+ MR F V LL LL + + V PF+ALPW ITWF+H + R D R+FD L +HPL LYV A +V D++LRCES+F ++HG L++LP D
Sbjct: 47 DSSVATVEDRDECFREVRRLAITPKGLVSDEFRRDLWPFLLGIG-EATHNTRPVTNSDLVEVHRDAAQVEKDVERSLWHYDVLQGIKESERRAKRRALTQIILGALSANDE-LFYFQGYHDIVSVFLLTL---------------------------------------------------------------------GSSP-----------------------------------TTMQAVQNVSETYQREPMRPGFEQVMATTRLLFPLLDAADELLFQHLRASGVEPFFALPWMITWFAHQLKRFGDVKRLFDVFLVTHPLFSLYVSAGVVLEARDKILRCESDFGTMHGMLSNLPLSMD 305
BLAST of mRNA_P-wetherbeei_contig6387.1.3 vs. uniprot
Match: A0A2G5B814_COERN (RabGAP/TBC (Fragment) n=1 Tax=Coemansia reversa (strain ATCC 12441 / NRRL 1564) TaxID=763665 RepID=A0A2G5B814_COERN) HSP 1 Score: 110 bits (275), Expect = 4.450e-23 Identity = 48/119 (40.34%), Postives = 76/119 (63.87%), Query Frame = 1
Query: 802 AEQSSVYFMRDCMRDSFRPVSKVLELLPVLLGRFAPEAQAFIAGAEVGPFYALPWYITWFSHDVPRLSDAARIFDALLASHPLMVLYVCAALVAHHADELLRCESEFASVHGFLASLPQ 1158
A ++++F+RD M S V + L+LL VLL + P A + +V PF+ + W +TWF+HDV +D RI+D L+ S P+ V+Y+ AA+VAH+ E+L E +FA++H L +LP+
Sbjct: 130 ARMAALFFVRDAMGSSLEDVMQQLQLLYVLLEQTCPAVHALLTDVDVPPFFGISWVLTWFAHDVDTFADICRIYDFLIVSPPMQVVYMAAAMVAHNQHEILAYERDFAAIHSGLVALPR 248 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6387.1.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig6387.1.3 >prot_P-wetherbeei_contig6387.1.3 ID=prot_P-wetherbeei_contig6387.1.3|Name=mRNA_P-wetherbeei_contig6387.1.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=648bp MARSRKGRRCPLEGSETANAGDAWIAPSEGVSDLEEIRELAWAPRGYRDHback to top mRNA from alignment at P-wetherbeei_contig6387:2..3420- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig6387.1.3 ID=mRNA_P-wetherbeei_contig6387.1.3|Name=mRNA_P-wetherbeei_contig6387.1.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=3419bp|location=Sequence derived from alignment at P-wetherbeei_contig6387:2..3420- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig6387:2..3420- >mRNA_P-wetherbeei_contig6387.1.3 ID=mRNA_P-wetherbeei_contig6387.1.3|Name=mRNA_P-wetherbeei_contig6387.1.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1944bp|location=Sequence derived from alignment at P-wetherbeei_contig6387:2..3420- (Phaeothamnion wetherbeei SAG_119_79)back to top |