mRNA_P-wetherbeei_contig6370.1.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6370.1.2
Unique NamemRNA_P-wetherbeei_contig6370.1.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6370.1.2 vs. uniprot
Match: A0A835YQX6_9STRA (Actin-related protein 2/3 complex subunit 3 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQX6_9STRA)

HSP 1 Score: 201 bits (512), Expect = 2.450e-61
Identity = 93/134 (69.40%), Postives = 108/134 (80.60%), Query Frame = 3
Query:  249 DDIIDEALFFFRANVMFRNFDVRCGADRILVYLTFYIQQCLREMEKTDEKQLAERALYNLAIRKFAVPGEPDWQLGTLFPSPQSRDEAEKCRSYLKQCREEVGGRLAARVFADGAKSKWWMLFSKRKFMGKELR 650
            +DIIDE LF+FRAN+MFRNF V   ADR L+YLTFY QQCLREMEKTD+KQ A RAL  LA + FA PGE  WQLGT+FP+P+ RDEAE  ++Y KQCREE+G RL  RVFADG KSKWW  FSKR+FMGKE++
Sbjct:   41 EDIIDETLFYFRANIMFRNFAVESNADRTLIYLTFYAQQCLREMEKTDDKQAANRALNLLANKTFAAPGEAGWQLGTIFPAPRVRDEAEMFKAYFKQCREELGTRLIERVFADGTKSKWWQFFSKRRFMGKEMQ 174          
BLAST of mRNA_P-wetherbeei_contig6370.1.2 vs. uniprot
Match: A0A7S2RMH4_9STRA (Actin-related protein 2/3 complex subunit 3 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RMH4_9STRA)

HSP 1 Score: 171 bits (433), Expect = 2.820e-49
Identity = 75/141 (53.19%), Postives = 105/141 (74.47%), Query Frame = 3
Query:  231 PCTAAADDIIDEALFFFRANVMFRNFDVRCGADRILVYLTFYIQQCLREMEKTDEKQLAERALYNLAIRKFAVPGEPDWQLGTLFPSPQSRDEAEKCRSYLKQCREEVGGRLAARVFA-DGAKSKWWMLFSKRKFMGKELR 650
            P     DD+IDE + FFRANV+FRNF+++  ADR L+YLT Y+QQCL+E E+       E+AL  LA+R+FA+PG+ +W +G+++P+P+S  E E C++Y KQCREE+G R +  +F  DG+K+KWW  FSKRKFMGKEL+
Sbjct:   44 PMPEDEDDVIDETIKFFRANVLFRNFEIKNSADRTLIYLTLYLQQCLKECERAKTVGEGEKALQQLALRQFAIPGDTNWAMGSMYPAPKSTAEGEGCKAYFKQCREELGRRFSQVLFLPDGSKNKWWQAFSKRKFMGKELK 184          
BLAST of mRNA_P-wetherbeei_contig6370.1.2 vs. uniprot
Match: A0A7S1U2P7_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U2P7_9STRA)

HSP 1 Score: 156 bits (395), Expect = 3.500e-43
Identity = 69/133 (51.88%), Postives = 95/133 (71.43%), Query Frame = 3
Query:  249 DDIIDEALFFFRANVMFRNFDVRCGADRILVYLTFYIQQCLREMEKTDEKQLAERALYNLAIRKFAVPGEPDWQLGTLFPSPQSRDEAEKCRSYLKQCREEVGGRLAARVFADGAKSKWWMLFSKRKFMGKEL 647
            +DI+DEAL++FRANV+FRN++++  ADR L+Y+T Y+   LRE ++      A R L   AIR FAVPGE  W LGTLFP P  R+E+E  ++Y KQ REE+  RL A+++ D  K+KWW +FSKRKFMG ++
Sbjct:   81 EDILDEALYYFRANVLFRNYEIKSAADRTLIYMTLYVTMILRECDRIGSATDASRQLQLSAIRNFAVPGEAGWALGTLFPPPADRNESETFKAYFKQAREEMSERLIAKLYTDAGKNKWWAMFSKRKFMGIDM 213          
BLAST of mRNA_P-wetherbeei_contig6370.1.2 vs. uniprot
Match: A0A7S2FM28_9STRA (Actin-related protein 2/3 complex subunit 3 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FM28_9STRA)

HSP 1 Score: 155 bits (392), Expect = 3.810e-43
Identity = 71/140 (50.71%), Postives = 100/140 (71.43%), Query Frame = 3
Query:  231 PCTAAADDIIDEALFFFRANVMFRNFDVRCGADRILVYLTFYIQQCLREMEKTDEKQLAERALYNLAIRKFAVPGEPDWQLGTLFPSPQSRDEAEKCRSYLKQCREEVGGRLAARVFA-DGAKSKWWMLFSKRKFMGKEL 647
            PC A  +DIIDE L FFRAN+ FRNF+V+ GADR L+YL+ Y+ Q L+E+++ ++K  A + L+ L I+ F VPGE  W LG +FP+P S  +A+  R+Y KQC+ E+G R+   ++  DG K+KWW +F+KRKFMGK L
Sbjct:   46 PCEADDEDIIDETLKFFRANIFFRNFEVKGGADRTLLYLSLYVAQVLKELDRQNDKTQAAKDLHALEIKSFPVPGEQGWTLGGMFPNPTSPADADAFRAYFKQCKVEIGRRVLEILYLPDGTKNKWWNMFAKRKFMGKTL 185          
BLAST of mRNA_P-wetherbeei_contig6370.1.2 vs. uniprot
Match: A0A8J6CIQ6_DIALT (Actin-related protein 2/3 complex subunit 3 n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CIQ6_DIALT)

HSP 1 Score: 154 bits (390), Expect = 5.600e-43
Identity = 73/140 (52.14%), Postives = 96/140 (68.57%), Query Frame = 3
Query:  237 TAAADDIIDEALFFFRANVMFRNFDVRCGADRILVYLTFYIQQCLREMEKTDEKQLAERALYNLAIRKFAVPGEPDWQLGTLFPSPQSRDEAEKCRSYLKQCREEVGGRLAARVFADG---AKSKWWMLFSKRKFMGKEL 647
            TA  +DIIDE LFFF+ANV+FRNF+VR  ADR+LVYLT Y+ +CL+ +E    K  A RAL N+A+  FA+PG+  + LG  FP+P++R EA+  RSY +Q REE G R+  + + DG     SKWW   SKR+FM K L
Sbjct:   36 TAGKEDIIDEVLFFFKANVLFRNFEVRGSADRLLVYLTLYVTECLKRVEAAPSKADAVRALNNMALESFAIPGDASFTLGPYFPTPENRQEADFVRSYFRQLREETGRRVVEKCYIDGETRVPSKWWTSLSKRRFMNKAL 175          
BLAST of mRNA_P-wetherbeei_contig6370.1.2 vs. uniprot
Match: A0A7S4BNT7_CHRCT (Actin-related protein 2/3 complex subunit 3 n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4BNT7_CHRCT)

HSP 1 Score: 150 bits (379), Expect = 2.260e-41
Identity = 69/137 (50.36%), Postives = 101/137 (73.72%), Query Frame = 3
Query:  240 AAADDIIDEALFFFRANVMFRNFDVRCGADRILVYLTFYIQQCLREMEKTDEKQLAERALYNLAIRKFAVPGEPDWQLGTLFPSPQSRDEAEKCRSYLKQCREEVGGRLAARVFA-DGAKSKWWMLFSKRKFMGKEL 647
            A +DD+IDE LFFF+ANV+FR+F+++  ADR+L+YLT YI QCL+++E   ++  A +AL ++A   F +PG+  + LGT FPSPQ+  EA+  R+YLKQ REE G RL  +V+  DG  SK+W++F+KR+FM K +
Sbjct:   36 AESDDVIDETLFFFKANVLFRHFELKGNADRVLIYLTLYITQCLKKLEGLPDRVSALKALTSMAHESFLIPGDAGFALGTFFPSPQTSQEADLTRAYLKQLREETGRRLLDKVYGEDGQPSKFWLVFAKRRFMNKSV 172          
BLAST of mRNA_P-wetherbeei_contig6370.1.2 vs. uniprot
Match: A0A7S2FM82_9STRA (Actin-related protein 2/3 complex subunit 3 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FM82_9STRA)

HSP 1 Score: 149 bits (377), Expect = 2.850e-41
Identity = 68/134 (50.75%), Postives = 97/134 (72.39%), Query Frame = 3
Query:  249 DDIIDEALFFFRANVMFRNFDVRCGADRILVYLTFYIQQCLREMEKTDEKQLAERALYNLAIRKFAVPGEPDWQLGTLFPSPQSRDEAEKCRSYLKQCREEVGGRLAARVFA-DGAKSKWWMLFSKRKFMGKEL 647
            +DIIDE L FFRAN+ FRNF+V+ GADR L+YL+ Y+ Q L+E+++ ++K  A + L+ L I+ F VPGE  W LG +FP+P S  +A+  R+Y KQC+ E+G R+   ++  DG K+KWW +F+KRKFMGK L
Sbjct:   24 EDIIDETLKFFRANIFFRNFEVKGGADRTLLYLSLYVAQVLKELDRQNDKTQAAKDLHALEIKSFPVPGEQGWTLGGMFPNPTSPADADAFRAYFKQCKVEIGRRVLEILYLPDGTKNKWWNMFAKRKFMGKTL 157          
BLAST of mRNA_P-wetherbeei_contig6370.1.2 vs. uniprot
Match: UPI001D07FB71 (actin-related protein 2/3 complex subunit 3-like n=1 Tax=Chrysoperla carnea TaxID=189513 RepID=UPI001D07FB71)

HSP 1 Score: 149 bits (376), Expect = 8.560e-41
Identity = 69/139 (49.64%), Postives = 97/139 (69.78%), Query Frame = 3
Query:  237 TAAADDIIDEALFFFRANVMFRNFDVRCGADRILVYLTFYIQQCLREMEKTDEKQLAERALYNLAIRKFAVPGEPDWQLGTLFPSPQSRDEAEKCRSYLKQCREEVGGRLAARVFA--DGAKSKWWMLFSKRKFMGKEL 647
            TAA  DIIDEAL++F+ANV FR ++V+  ADR+L+Y+T YI +CL+ ++K   KQ     +Y LAI KF++PGEP + L  ++P P S  +A+  R YL+Q R+E G R+  +VFA  DG  SKWW+ F+K+KFM K L
Sbjct:   39 TAADMDIIDEALYYFKANVFFRTYEVKNEADRVLIYVTLYITECLKRLQKCATKQQGINEMYTLAISKFSIPGEPGFPLNAVYPKPTSPTDADLLRQYLQQLRQETGVRVVEKVFATEDGKPSKWWLCFAKKKFMDKSL 177          
BLAST of mRNA_P-wetherbeei_contig6370.1.2 vs. uniprot
Match: UPI0005AC7586 (actin-related protein 2/3 complex subunit 3 n=2 Tax=Opiinae TaxID=68883 RepID=UPI0005AC7586)

HSP 1 Score: 148 bits (373), Expect = 2.130e-40
Identity = 66/141 (46.81%), Postives = 99/141 (70.21%), Query Frame = 3
Query:  231 PCTAAAD-DIIDEALFFFRANVMFRNFDVRCGADRILVYLTFYIQQCLREMEKTDEKQLAERALYNLAIRKFAVPGEPDWQLGTLFPSPQSRDEAEKCRSYLKQCREEVGGRLAARVFADGAK-SKWWMLFSKRKFMGKEL 647
            PC+   + DIIDEAL+FFRANV FR ++++  ADR+L+Y+T YI +CL++++K   +  A   +Y+LAI KF +PG+P + L +++  P S  EA++ R YL+Q R+E   RL  RV++D  K SKWW+ F+K+KFM K L
Sbjct:   33 PCSPGTEQDIIDEALYFFRANVFFRTYEIKSEADRVLIYITLYITECLKKLQKCANQNQALNEMYSLAISKFDIPGDPGFPLNSVYAKPSSTTEADQMRQYLQQIRQETAARLVERVYSDNGKPSKWWLCFAKKKFMDKTL 173          
BLAST of mRNA_P-wetherbeei_contig6370.1.2 vs. uniprot
Match: A0A7S3AL63_9EUKA (Actin-related protein 2/3 complex subunit 3 n=2 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3AL63_9EUKA)

HSP 1 Score: 147 bits (371), Expect = 3.040e-40
Identity = 69/141 (48.94%), Postives = 97/141 (68.79%), Query Frame = 3
Query:  231 PCTAAADDIIDEALFFFRANVMFRNFDVRCGADRILVYLTFYIQQCLREMEKTDEKQLAERALYNLAIRKFAVPGEPDWQLGTLFPSPQSRDEAEKCRSYLKQCREEVGGRLAARVFA--DGAKSKWWMLFSKRKFMGKEL 647
            PC    DD++DE L FF+ANV+F+ F+V+  ADR+L+YLT YI QCL ++     K    RAL ++A   F +PG+  + LG+ FP+P S  EA+ CRSYLKQ REE+G R+ ++V+   DG  SK+W++F+KRKFM K L
Sbjct:   27 PCPEGEDDVLDEILGFFKANVLFKQFEVKGAADRVLIYLTLYITQCLSKLNTVASKADGVRALTSMAHETFHIPGDGGFPLGSFFPAPASAREADLCRSYLKQLREEMGRRVLSKVYQSPDGVASKFWLVFAKRKFMNKAL 167          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6370.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YQX6_9STRA2.450e-6169.40Actin-related protein 2/3 complex subunit 3 n=1 Ta... [more]
A0A7S2RMH4_9STRA2.820e-4953.19Actin-related protein 2/3 complex subunit 3 n=1 Ta... [more]
A0A7S1U2P7_9STRA3.500e-4351.88Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S2FM28_9STRA3.810e-4350.71Actin-related protein 2/3 complex subunit 3 n=1 Ta... [more]
A0A8J6CIQ6_DIALT5.600e-4352.14Actin-related protein 2/3 complex subunit 3 n=1 Ta... [more]
A0A7S4BNT7_CHRCT2.260e-4150.36Actin-related protein 2/3 complex subunit 3 n=1 Ta... [more]
A0A7S2FM82_9STRA2.850e-4150.75Actin-related protein 2/3 complex subunit 3 n=1 Ta... [more]
UPI001D07FB718.560e-4149.64actin-related protein 2/3 complex subunit 3-like n... [more]
UPI0005AC75862.130e-4046.81actin-related protein 2/3 complex subunit 3 n=2 Ta... [more]
A0A7S3AL63_9EUKA3.040e-4048.94Actin-related protein 2/3 complex subunit 3 n=2 Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6370contigP-wetherbeei_contig6370:2..1465 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog121225.PHUM528670-PA
Preferred nameARPC3
PFAMsP21-Arc
Model size919
Max annot lvl33208|Metazoa
KEGG koko:K05756
KEGG Pathwayko04144,ko04666,ko04810,ko05100,ko05130,ko05131,ko05132,map04144,map04666,map04810,map05100,map05130,map05131,map05132
Hectar predicted targeting categoryother localisation
GOsGO:0001667,GO:0002009,GO:0002252,GO:0002253,GO:0002376,GO:0002429,GO:0002431,GO:0002433,GO:0002682,GO:0002684,GO:0002757,GO:0002764,GO:0002768,GO:0003674,GO:0003779,GO:0005198,GO:0005200,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005856,GO:0005884,GO:0005885,GO:0006810,GO:0006897,GO:0006909,GO:0006928,GO:0006996,GO:0007010,GO:0007015,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007275,GO:0008064,GO:0008092,GO:0008150,GO:0009653,GO:0009790,GO:0009888,GO:0009987,GO:0010631,GO:0010638,GO:0015629,GO:0016043,GO:0016192,GO:0016331,GO:0016477,GO:0023052,GO:0030027,GO:0030029,GO:0030036,GO:0030424,GO:0030426,GO:0030427,GO:0030832,GO:0030833,GO:0030838,GO:0031252,GO:0031334,GO:0031941,GO:0032271,GO:0032273,GO:0032501,GO:0032502,GO:0032535,GO:0032956,GO:0032970,GO:0032991,GO:0033043,GO:0033267,GO:0034314,GO:0038093,GO:0038094,GO:0038096,GO:0040011,GO:0042995,GO:0043005,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043254,GO:0044087,GO:0044089,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0045010,GO:0048013,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0048598,GO:0048729,GO:0048856,GO:0048870,GO:0050776,GO:0050778,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051179,GO:0051234,GO:0051493,GO:0051495,GO:0051674,GO:0051716,GO:0060429,GO:0061024,GO:0061850,GO:0065007,GO:0065008,GO:0070358,GO:0071840,GO:0090066,GO:0090130,GO:0090132,GO:0090723,GO:0090725,GO:0097435,GO:0097458,GO:0098657,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0110053,GO:0120025,GO:0120038,GO:0150034,GO:1902903,GO:1902905
Exons3
Evalue1.41e-42
EggNOG OGsKOG3155@1|root,KOG3155@2759|Eukaryota,39E3P@33154|Opisthokonta,3BJGN@33208|Metazoa,3D12Q@33213|Bilateria,41W38@6656|Arthropoda,3SHUF@50557|Insecta,3EA56@33342|Paraneoptera
Ec32 ortholog descriptionActin-related protein 2/3 complex subunit 3
Ec32 orthologEc-13_002920.1
DescriptionFunctions as component of the Arp2 3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks
Cds size444
COG categoryZ
BRITEko00000,ko00001,ko04131,ko04812
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186908.5373487-UTR-P-wetherbeei_contig6370:1..2671683186908.5373487-UTR-P-wetherbeei_contig6370:1..267Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6370 2..267 -
1683186908.5806992-UTR-P-wetherbeei_contig6370:1256..14651683186908.5806992-UTR-P-wetherbeei_contig6370:1256..1465Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6370 1257..1465 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186908.5495996-CDS-P-wetherbeei_contig6370:267..4071683186908.5495996-CDS-P-wetherbeei_contig6370:267..407Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6370 268..407 -
1683186908.559883-CDS-P-wetherbeei_contig6370:759..8671683186908.559883-CDS-P-wetherbeei_contig6370:759..867Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6370 760..867 -
1683186908.5701914-CDS-P-wetherbeei_contig6370:1060..12561683186908.5701914-CDS-P-wetherbeei_contig6370:1060..1256Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6370 1061..1256 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6370.1.2prot_P-wetherbeei_contig6370.1.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6370 268..1256 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6370.1.2

>prot_P-wetherbeei_contig6370.1.2 ID=prot_P-wetherbeei_contig6370.1.2|Name=mRNA_P-wetherbeei_contig6370.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=148bp
MDKLSFSPCTAAADDIIDEALFFFRANVMFRNFDVRCGADRILVYLTFYI
QQCLREMEKTDEKQLAERALYNLAIRKFAVPGEPDWQLGTLFPSPQSRDE
AEKCRSYLKQCREEVGGRLAARVFADGAKSKWWMLFSKRKFMGKELR*
back to top

mRNA from alignment at P-wetherbeei_contig6370:2..1465-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6370.1.2 ID=mRNA_P-wetherbeei_contig6370.1.2|Name=mRNA_P-wetherbeei_contig6370.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1464bp|location=Sequence derived from alignment at P-wetherbeei_contig6370:2..1465- (Phaeothamnion wetherbeei SAG_119_79)
TATCACTCAAAGATCGACGAGAGCGGCTTCGATGTCGCGTGCGGATGCTC CATTTTGCCGTTGAAGACGAAGACCAGGGGGCCAGCACCAATGCCGATTG ACGGTAAGCTTTCGCAGAAGTGGAAACGCTCTTGCGCTTTACGACTGTTG AAGACCGTACGTCTTGCAGTGAAAAAGCCAGCAGTGCTGTAAGCCCGTCG GATTTGTGTATGGACAAACTCTCTTTCTCTCCTTGTACAGCGGCGGCGGA CGACATTATCGACGAGGCACTCTTCTTCTTCCGCGCAAATGTCATGTTCC GCAACTTCGACGTGCGGTGTGGCGCCGACCGCATCCTCGTATACCTGACC TTCTACATCCAGCAGTGCCTGCGCGAAATGGAGAAGACGGACGAGAAGCA GTTGGGTGAGCTGTTCTTTCGCAGGGGTTTCTTTGTTTATTCCTGGCGAT ATCTTTAGCCCCAGAGTAGCTCTTTCTTGCTGAATTTTTCATTTGCACCA AGGACACGGTGTAAAAATGATATCCTTACATATTCGCCCCTGGGCCTTTT CTAATCTTGTTCGCGTAATCTCTCCGCCTTGGCGCTCGCAAACGGCAGCG GAGCGAGCACTGTACAACCTGGCCATCAGAAAGTTCGCGGTACCTGGGGA ACCGGACTGGCAGCTCGGGACGCTCTTCCCGAGCCCACAAAGTCGCGATG AGGCGGGTGAGCTGAGACGACATCAATTTGTTTTAATTTTCCTTTGAATG CTTGCGCGTTCTCTCCTTACCGCTTGCGATCAAGGATGGGAAAATCTTTA TTTTGCTGCTTGGTGAAGGCAGTCCTCCCCACCATTGTGGTGCGTTATCA CCGTTGCCGGCAACCCAATTCGACGGTTGGTGGCAAAATCAGTTAAAATT AACTACTCCGCGCACCCTTAAACTCAAGTTCTGGCGGGGATCATGATGTC AAGGCGCATCCAAACACTTCCTGCGTACCCGTGTACTGTTTTGCTCTCCT CGGACCGGGCAATTCATTTCTTTTCTTTCTGTCATGTCGACGTTGCACGT GACCACAGAGAAGTGCCGAAGCTACCTGAAGCAGTGCCGAGAGGAGGTCG GCGGCCGGTTGGCGGCACGCGTCTTCGCTGACGGCGCCAAGAGCAAGTGG TGGATGCTCTTCAGCAAGCGCAAGTTCATGGGCAAGGAGCTACGCTGATT AATGCTCGCGGCTGCGATTCCGACGCGGCAGTAGGCTGGGAGGGGTGCAC GGTGGCTTGGTGCGGGACGGCCGGGGCTGGGAAGTGACTGCCTTGGCGTC GGCGGCGAGGGGAAAGCGAGGGATGACGATTTGGCGGCGGGGGCAGTCGG CGCGGTAGGGCAGCGGCCACCGTTTTGTGACCACGGTGCTCGTCTCTGGC GGTTGCGGGGGTGGCGGCCGAGCCGGCTGCGGCTCACCTCGTTGCCGCTG CAAGATGTACAAAA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig6370:2..1465-

>mRNA_P-wetherbeei_contig6370.1.2 ID=mRNA_P-wetherbeei_contig6370.1.2|Name=mRNA_P-wetherbeei_contig6370.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=444bp|location=Sequence derived from alignment at P-wetherbeei_contig6370:2..1465- (Phaeothamnion wetherbeei SAG_119_79)
ATGGACAAACTCTCTTTCTCTCCTTGTACAGCGGCGGCGGACGACATTAT
CGACGAGGCACTCTTCTTCTTCCGCGCAAATGTCATGTTCCGCAACTTCG
ACGTGCGGTGTGGCGCCGACCGCATCCTCGTATACCTGACCTTCTACATC
CAGCAGTGCCTGCGCGAAATGGAGAAGACGGACGAGAAGCAGTTGGCGGA
GCGAGCACTGTACAACCTGGCCATCAGAAAGTTCGCGGTACCTGGGGAAC
CGGACTGGCAGCTCGGGACGCTCTTCCCGAGCCCACAAAGTCGCGATGAG
GCGGAGAAGTGCCGAAGCTACCTGAAGCAGTGCCGAGAGGAGGTCGGCGG
CCGGTTGGCGGCACGCGTCTTCGCTGACGGCGCCAAGAGCAAGTGGTGGA
TGCTCTTCAGCAAGCGCAAGTTCATGGGCAAGGAGCTACGCTGA
back to top