mRNA_P-wetherbeei_contig6369.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_P-wetherbeei_contig6369.1.1
Unique Name	mRNA_P-wetherbeei_contig6369.1.1
Type	mRNA
Organism	Phaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)

Homology

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BLAST of mRNA_P-wetherbeei_contig6369.1.1 vs. uniprot
Match: A0A7X8XLM9_9BURK (30S ribosomal protein S21 n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=A0A7X8XLM9_9BURK)

HSP 1 Score: 73.2 bits (178), Expect = 5.250e-16
Identity = 35/43 (81.40%), Postives = 40/43 (93.02%), Query Frame = 1

Query:    1 METRVEEGESIDSALKRFRRQCQRDGVLAEIKKREYYEKPSVR 129
            METRV +GE ID ALKRFRRQCQ++GVLAE+KKREYY+KPSVR
Sbjct:    1 METRVMDGEPIDVALKRFRRQCQKEGVLAEVKKREYYDKPSVR 43

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BLAST of mRNA_P-wetherbeei_contig6369.1.1 vs. uniprot
Match: A0A419TB93_9FIRM (30S ribosomal protein S21 n=1 Tax=Thermohalobacter berrensis TaxID=99594 RepID=A0A419TB93_9FIRM)

HSP 1 Score: 68.2 bits (165), Expect = 5.300e-14
Identity = 30/42 (71.43%), Postives = 39/42 (92.86%), Query Frame = 1

Query:    4 ETRVEEGESIDSALKRFRRQCQRDGVLAEIKKREYYEKPSVR 129
            E R+++ ES+DSAL+RF+RQC RDG+++EIKKREYYEKPSVR
Sbjct:    3 EVRIKKNESLDSALRRFKRQCARDGIISEIKKREYYEKPSVR 44

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BLAST of mRNA_P-wetherbeei_contig6369.1.1 vs. uniprot
Match: A0A7C6HEF5_9CLOT (30S ribosomal protein S21 n=1 Tax=Clostridiaceae bacterium TaxID=1898204 RepID=A0A7C6HEF5_9CLOT)

HSP 1 Score: 66.2 bits (160), Expect = 2.920e-13
Identity = 32/42 (76.19%), Postives = 37/42 (88.10%), Query Frame = 1

Query:    4 ETRVEEGESIDSALKRFRRQCQRDGVLAEIKKREYYEKPSVR 129
            E RV+E ES+DSALKRF+R C RDGVLAE +KRE+YEKPSVR
Sbjct:    3 EVRVKENESLDSALKRFKRYCARDGVLAEYRKREHYEKPSVR 44

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BLAST of mRNA_P-wetherbeei_contig6369.1.1 vs. uniprot
Match: D9S2Q0_THEOJ (30S ribosomal protein S21 n=5 Tax=Firmicutes TaxID=1239 RepID=D9S2Q0_THEOJ)

HSP 1 Score: 66.2 bits (160), Expect = 3.000e-13
Identity = 32/42 (76.19%), Postives = 38/42 (90.48%), Query Frame = 1

Query:    4 ETRVEEGESIDSALKRFRRQCQRDGVLAEIKKREYYEKPSVR 129
            E RV E ESIDSALKRF+RQCQ+ GVL+E++KRE+YEKPSVR
Sbjct:    3 EVRVGENESIDSALKRFKRQCQKAGVLSELRKREHYEKPSVR 44

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BLAST of mRNA_P-wetherbeei_contig6369.1.1 vs. uniprot
Match: A0A847VY37_9FIRM (30S ribosomal protein S21 n=1 Tax=Oscillospiraceae bacterium TaxID=2485925 RepID=A0A847VY37_9FIRM)

HSP 1 Score: 65.9 bits (159), Expect = 4.260e-13
Identity = 31/42 (73.81%), Postives = 38/42 (90.48%), Query Frame = 1

Query:    4 ETRVEEGESIDSALKRFRRQCQRDGVLAEIKKREYYEKPSVR 129
            E RV+E ESIDSAL+RF+RQC R GVLAE++KRE+YEKPSV+
Sbjct:    3 EIRVKENESIDSALRRFKRQCARSGVLAEVRKREHYEKPSVK 44

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BLAST of mRNA_P-wetherbeei_contig6369.1.1 vs. uniprot
Match: A0A7C6UY39_9CLOT (30S ribosomal protein S21 n=1 Tax=Clostridiaceae bacterium TaxID=1898204 RepID=A0A7C6UY39_9CLOT)

HSP 1 Score: 65.9 bits (159), Expect = 4.260e-13
Identity = 32/42 (76.19%), Postives = 38/42 (90.48%), Query Frame = 1

Query:    4 ETRVEEGESIDSALKRFRRQCQRDGVLAEIKKREYYEKPSVR 129
            E RV+E E++DSALKRF+RQC + GVLAEIKKRE+YEKPSVR
Sbjct:    3 EIRVKENETLDSALKRFKRQCAKAGVLAEIKKREHYEKPSVR 44

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BLAST of mRNA_P-wetherbeei_contig6369.1.1 vs. uniprot
Match: A0A356XEJ9_9FIRM (30S ribosomal protein S21 n=1 Tax=Clostridiales bacterium TaxID=1898207 RepID=A0A356XEJ9_9FIRM)

HSP 1 Score: 65.5 bits (158), Expect = 6.050e-13
Identity = 29/42 (69.05%), Postives = 38/42 (90.48%), Query Frame = 1

Query:    4 ETRVEEGESIDSALKRFRRQCQRDGVLAEIKKREYYEKPSVR 129
            E R+++ ES+DSALKRF+RQC + GVLAE++KRE+YEKPSVR
Sbjct:    3 EVRIKDNESLDSALKRFKRQCSKSGVLAEVRKREHYEKPSVR 44

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BLAST of mRNA_P-wetherbeei_contig6369.1.1 vs. uniprot
Match: UPI001F41F1C8 (30S ribosomal protein S21 n=1 Tax=Microaerobacter geothermalis TaxID=674972 RepID=UPI001F41F1C8)

HSP 1 Score: 65.5 bits (158), Expect = 6.050e-13
Identity = 30/42 (71.43%), Postives = 38/42 (90.48%), Query Frame = 1

Query:    4 ETRVEEGESIDSALKRFRRQCQRDGVLAEIKKREYYEKPSVR 129
            ETRV + ES+DSAL+RF+R C +DGVLAE+KKR++YEKPSVR
Sbjct:    3 ETRVRKNESLDSALRRFKRSCAKDGVLAEVKKRKHYEKPSVR 44

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BLAST of mRNA_P-wetherbeei_contig6369.1.1 vs. uniprot
Match: R5PW90_9FIRM (30S ribosomal protein S21 n=4 Tax=Eubacteriales TaxID=186802 RepID=R5PW90_9FIRM)

HSP 1 Score: 65.5 bits (158), Expect = 6.190e-13
Identity = 30/42 (71.43%), Postives = 38/42 (90.48%), Query Frame = 1

Query:    4 ETRVEEGESIDSALKRFRRQCQRDGVLAEIKKREYYEKPSVR 129
            E RV+E ES+DSAL+RF+RQC R GV+AE+KKRE+YEKPSV+
Sbjct:    3 EIRVKENESLDSALRRFKRQCARSGVIAEVKKREHYEKPSVK 44

[Close]

BLAST of mRNA_P-wetherbeei_contig6369.1.1 vs. uniprot
Match: D3R344_MAGIU (30S ribosomal protein S21 n=14 Tax=Eubacteriales TaxID=186802 RepID=D3R344_MAGIU)

HSP 1 Score: 64.7 bits (156), Expect = 1.190e-12
Identity = 30/42 (71.43%), Postives = 37/42 (88.10%), Query Frame = 1

Query:    4 ETRVEEGESIDSALKRFRRQCQRDGVLAEIKKREYYEKPSVR 129
            E RV+E ES+DSAL+RF+R C R GVLAE++KRE+YEKPSVR
Sbjct:    3 EVRVKENESLDSALRRFKRSCARSGVLAEVRKREHYEKPSVR 44

The following BLAST results are available for this feature:

BLAST of mRNA_P-wetherbeei_contig6369.1.1 vs. uniprot

BLAST of mRNA_P-wetherbeei_contig6369.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A7X8XLM9_9BURK	5.250e-16	81.40	30S ribosomal protein S21 n=1 Tax=Burkholderiales ...	[more]
A0A419TB93_9FIRM	5.300e-14	71.43	30S ribosomal protein S21 n=1 Tax=Thermohalobacter...	[more]
A0A7C6HEF5_9CLOT	2.920e-13	76.19	30S ribosomal protein S21 n=1 Tax=Clostridiaceae b...	[more]
D9S2Q0_THEOJ	3.000e-13	76.19	30S ribosomal protein S21 n=5 Tax=Firmicutes TaxID...	[more]
A0A847VY37_9FIRM	4.260e-13	73.81	30S ribosomal protein S21 n=1 Tax=Oscillospiraceae...	[more]
A0A7C6UY39_9CLOT	4.260e-13	76.19	30S ribosomal protein S21 n=1 Tax=Clostridiaceae b...	[more]
A0A356XEJ9_9FIRM	6.050e-13	69.05	30S ribosomal protein S21 n=1 Tax=Clostridiales ba...	[more]
UPI001F41F1C8	6.050e-13	71.43	30S ribosomal protein S21 n=1 Tax=Microaerobacter ...	[more]
R5PW90_9FIRM	6.190e-13	71.43	30S ribosomal protein S21 n=4 Tax=Eubacteriales Ta...	[more]
D3R344_MAGIU	1.190e-12	71.43	30S ribosomal protein S21 n=14 Tax=Eubacteriales T...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-wetherbeei_contig6369	contig	P-wetherbeei_contig6369:127..297 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	1
Start	1
Seed ortholog	555079.Toce_0915
Preferred name	rpsU
PFAMs	Ribosomal_S21
Model size	171
Max annot lvl	186801\|Clostridia
KEGG ko	ko:K02970
KEGG Pathway	ko03010,map03010
KEGG Module	M00178
Hectar predicted targeting category	no signal peptide or anchor
Exons	1
Evalue	4.91e-14
EggNOG OGs	COG0828@1\|root,COG0828@2\|Bacteria,1VEHU@1239\|Firmicutes,24QP9@186801\|Clostridia,42H3D@68295\|Thermoanaerobacterales
Description	Belongs to the bacterial ribosomal protein bS21 family
Cds size	171
COG category	J
BRITE	br01610,ko00000,ko00001,ko00002,ko03011

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1683186908.3440633-CDS-P-wetherbeei_contig6369:126..297	1683186908.3440633-CDS-P-wetherbeei_contig6369:126..297	Phaeothamnion wetherbeei SAG_119_79	CDS	P-wetherbeei_contig6369 127..297 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-wetherbeei_contig6369.1.1	prot_P-wetherbeei_contig6369.1.1	Phaeothamnion wetherbeei SAG_119_79	polypeptide	P-wetherbeei_contig6369 127..297 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-wetherbeei_contig6369:127..297-
coding sequence from alignment at P-wetherbeei_contig6369:127..297-

protein sequence of mRNA_P-wetherbeei_contig6369.1.1

>prot_P-wetherbeei_contig6369.1.1 ID=prot_P-wetherbeei_contig6369.1.1|Name=mRNA_P-wetherbeei_contig6369.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=57bp
METRVEEGESIDSALKRFRRQCQRDGVLAEIKKREYYEKPSVRRKKKMLA
ARRRRS*

mRNA from alignment at P-wetherbeei_contig6369:127..297-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-wetherbeei_contig6369.1.1 ID=mRNA_P-wetherbeei_contig6369.1.1|Name=mRNA_P-wetherbeei_contig6369.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=171bp|location=Sequence derived from alignment at P-wetherbeei_contig6369:127..297- (Phaeothamnion wetherbeei SAG_119_79)
ATGGAAACACGTGTAGAAGAAGGCGAATCCATTGATTCCGCTCTCAAACG
CTTCCGCCGTCAATGCCAGCGCGATGGCGTTCTGGCTGAGATCAAAAAGC
GCGAGTATTATGAGAAGCCTAGCGTTCGACGCAAGAAGAAGATGCTAGCT
GCTCGTCGTCGCCGTTCCTAA

Coding sequence (CDS) from alignment at P-wetherbeei_contig6369:127..297-

>mRNA_P-wetherbeei_contig6369.1.1 ID=mRNA_P-wetherbeei_contig6369.1.1|Name=mRNA_P-wetherbeei_contig6369.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=171bp|location=Sequence derived from alignment at P-wetherbeei_contig6369:127..297- (Phaeothamnion wetherbeei SAG_119_79)
ATGGAAACACGTGTAGAAGAAGGCGAATCCATTGATTCCGCTCTCAAACG
CTTCCGCCGTCAATGCCAGCGCGATGGCGTTCTGGCTGAGATCAAAAAGC
GCGAGTATTATGAGAAGCCTAGCGTTCGACGCAAGAAGAAGATGCTAGCT
GCTCGTCGTCGCCGTTCCTAA