mRNA_P-wetherbeei_contig6362.1.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6362.1.2
Unique NamemRNA_P-wetherbeei_contig6362.1.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig6362.1.2 vs. uniprot
Match: D8LN09_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LN09_ECTSI)

HSP 1 Score: 169 bits (428), Expect = 1.030e-41
Identity = 138/435 (31.72%), Postives = 189/435 (43.45%), Query Frame = 2 
Query:  113 YDIYAYQPEYEIQDPELFEHDEALLEKWRQDRIRSNDQWQFELYKSQQLGEWHGTWQEYVPLTLAA--EPDSSIPAPRVLAPGAVFHASTTIV--VYDDGAETARGMDDGGSGGGSVGSRSEGAAKRFEHVHA-AMGGEASTASLSAAAAVAKGLPDFVRRVLYPESFRAERGSQVVGNCYTHGQR----CDGGDDIWMEIGA*NGGASSSASSLR*RSLGDFL*IILRPFFPFSFPPPPARDSLPFFLPCMDRSPSVRLTIFAWPTGIRDKDVRVRCLLNYRFAAG--TDARDAAAVASSLEAADPT-RMDVESVYVVREGLWRLPMVDAAAEEKLYGAAGRGIFDPPTESQNQRYYTIYAAGGLTIRFPIYVETGGAAGGAGSAECVSVDWAGGAMRYQVDRKMRAGLMAANGGCEGLELTEIQSEDAERYAP 1381
            Y  Y Y+PE+E+Q  E    DE  L +WR +++ +ND+WQF  Y +Q +G W G+WQEYV   L+A  +P+S I A   + PG  F A+T I   V +   +T                      K FEH    A GGE       A    ++  P  V   L+ +SFR   G+QVVGN YT  +       G D  W+E+                                                                  G+R +DVR+RC+  Y   AG   DA                    +  V+VVREGL RLP  DA  E +LYG+AG+G++DPP+ S++  Y++IYA GGLT+RFP+ VE G            SVDW  G+ RYQ DR         +G    LE+TEI ++DAE + P
Sbjct:  140 YSEYGYEPEFELQGEEP-NADEETLARWRLEKLLANDRWQFGKYGTQNVGNWIGSWQEYVAEDLSAGSDPESDIGAMIGIIPGKKFVATTKITRRVIESAEDT----------------------KIFEHEQGQATGGEGQ----GAVGYESEACPQPVVETLFSDSFRGGNGTQVVGNAYTSAETLAVAAGGADGPWIEV------------------------------------------------------------------GLRVQDVRMRCVFEYGPGAGGSVDAEXXXXXXXXXXXXXXXGSTSIRRVFVVREGLDRLPPEDADKEPELYGSAGKGLYDPPSLSRSPLYFSIYAEGGLTMRFPLRVEEG-------QGGVFSVDWTAGSRRYQADRVFDV----LDGSLRRLEVTEIGTQDAEVFLP 470
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BLAST of mRNA_P-wetherbeei_contig6362.1.2 vs. uniprot
Match: A0A7S3QHJ8_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QHJ8_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 4.420e-9
Identity = 48/134 (35.82%), Postives = 70/134 (52.24%), Query Frame = 2 
Query: 1019 SVYVVREGLWRLPM-------VDAAAEEKLYGAAGR--GIFDPP---TESQNQRYYTIYAAGGLTIRFPIYVETGGAAGGAGSAECVSVDWAGGAMRYQVDRKMRAGLMAANGGCEGLELTEIQSEDAERYAPS 1384
            S+ + RE   R P        +D    EKL+G  G   G++DPP   T+ Q  +Y T+   GG TI FP  ++    A   G+    ++DW+ G +RYQ DRK   G      G   LEL+E+Q+EDAE++ P+
Sbjct:  324 SIIICRETRERWPRYLTETRSLDETISEKLFGLPGADGGLYDPPPVGTKEQASQYMTLNLDGGATILFPHKIDQDPHAH-KGNGWVQTLDWSPGRLRYQADRKFFGGTDVR--GLRSLELSEVQTEDAEQWKPN 454
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BLAST of mRNA_P-wetherbeei_contig6362.1.2 vs. uniprot
Match: K0TFG4_THAOC (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TFG4_THAOC)

HSP 1 Score: 57.4 bits (137), Expect = 8.290e-6
Identity = 38/105 (36.19%), Postives = 54/105 (51.43%), Query Frame = 2 
Query: 1085 LYGAAGR--GIFDPPTESQNQR----YYTIYAAGGLTIRFPIYVETGGAAGGAGSAECVSVDWAGGAMRYQVDRKMRAGLMAANGGCEGLELTEIQSEDAERYAP 1381
            L+G  G   G++DPP     +R    Y  +   GG T+  P  ++     G AG     S+DW  G +RYQVDRK+  G      G   LEL+E+QS +A++Y P
Sbjct:   65 LFGPPGAPGGLYDPPPVGSEERAVDNYMLLDFEGGSTVLLPHRLDQNEDDGEAGWV--TSLDWTPGPIRYQVDRKVMGGSKLK--GLRTLELSEVQSAEADKYRP 165
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6362.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LN09_ECTSI1.030e-4131.72Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S3QHJ8_9STRA4.420e-935.82Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
K0TFG4_THAOC8.290e-636.19Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6362contigP-wetherbeei_contig6362:93..3472 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G0A1
PFAMsCBM_20,E1_4HB,E1_FCCH,E1_UFD,ThiF,UBA_e1_thiolCys,UQ_con
Model size2362
Max annot lvl2759|Eukaryota
KEGG koko:K03178,ko:K10586,ko:K10699
KEGG Pathwayko04120,ko04214,ko04215,ko05012,map04120,map04214,map04215,map05012
Hectar predicted targeting categoryother localisation
Exons5
Evalue0.000204
EggNOG OGsCOG5078@1|root,KOG0895@2759|Eukaryota
EC2.3.2.23,6.2.1.45
Descriptionubiquitin-protein transferase activity
Cds size750
COG categoryO
BRITEko00000,ko00001,ko01000,ko04121,ko04147
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6362.1.2prot_P-wetherbeei_contig6362.1.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6362 93..842 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186907.6664762-CDS-P-wetherbeei_contig6362:92..8421683186907.6664762-CDS-P-wetherbeei_contig6362:92..842Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6362 93..842 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186907.6764758-UTR-P-wetherbeei_contig6362:842..12721683186907.6764758-UTR-P-wetherbeei_contig6362:842..1272Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6362 843..1272 -
1683186907.6848006-UTR-P-wetherbeei_contig6362:1527..16311683186907.6848006-UTR-P-wetherbeei_contig6362:1527..1631Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6362 1528..1631 -
1683186907.6992278-UTR-P-wetherbeei_contig6362:1813..22691683186907.6992278-UTR-P-wetherbeei_contig6362:1813..2269Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6362 1814..2269 -
1683186907.723905-UTR-P-wetherbeei_contig6362:2591..29411683186907.723905-UTR-P-wetherbeei_contig6362:2591..2941Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6362 2592..2941 -
1683186907.735965-UTR-P-wetherbeei_contig6362:3200..34721683186907.735965-UTR-P-wetherbeei_contig6362:3200..3472Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6362 3201..3472 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6362.1.2

>prot_P-wetherbeei_contig6362.1.2 ID=prot_P-wetherbeei_contig6362.1.2|Name=mRNA_P-wetherbeei_contig6362.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=250bp
MTSKDVIEIGDSDDEEIQRTAPALNSEGIDSHVDLVEVVEMVPPPPSSST
GVSSTPCASIAGGPHVSFGDGGVSSSSAGSLPFSTTCYACHENGPLDRLY
SLDPCNHKLCSHCAASAAATALTGVAACPVCKKELSVRDVRLLLSNTDWR
TLQQRRLQKFRALLAQGGASCPACLTPLPLFFGTSSQHGSTMQSRCDGSA
GVAKTACGSCGAVVCRLCRAAWTGGHACSTASLLGLEVLLRLLEQHWTTD
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mRNA from alignment at P-wetherbeei_contig6362:93..3472-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6362.1.2 ID=mRNA_P-wetherbeei_contig6362.1.2|Name=mRNA_P-wetherbeei_contig6362.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=3380bp|location=Sequence derived from alignment at P-wetherbeei_contig6362:93..3472- (Phaeothamnion wetherbeei SAG_119_79)
AGAAAAGCGTCCTCGAGCTTCGCAGGCGACATACTCTCGCATCCCGAGCC
CTCGATGGACACCATCAGAGCTTTTGCTTGCTGCAGATCAGAGCTCTGCA
GACGACGACTACTACGATATTTACGCCTATCAACCAGAATACGAAATTCA
AGACCCTGAACTCTTTGAGCACGACGAGGCCCTCTTAGAAAAGTGGCGAC
AAGACAGGATACGCAGCAACGATCAGTGGCAATTTGAACTTTACAAGTCG
CAGCAGCTGGGGGAATGGCACGGTGAGCCGCCTATACCTCCTCTTCATGT
CCTTCCAAACGCGCTCCAAGTGGAATTCTTTACAAATCCTTCACTTTCGT
TGCATGCTGAGAGGAATTGACGCCATAATGAAGTGTTTCTGCGATGTGCC
TGCGAAGTTCCCTAATTAAAATAGAGAGACGGTTACATATCCTCGAAGCA
GTGCTGGCACCCCCTTGACCACGCTCTCTCGGCTCACCCGGTTGATAGGC
TGTAAATGCCCACCCGGAACCATTCCTCCAGGGACCTGGCAAGAATACGT
GCCCTTGACGCTCGCCGCGGAGCCCGATTCCAGCATCCCTGCTCCGCGCG
TCCTCGCCCCAGGTGCTGTTTTCCACGCCAGCACAACCATTGTGGTTTAC
GACGACGGCGCGGAAACCGCAAGGGGGATGGATGACGGCGGCAGCGGCGG
CGGCAGCGTGGGAAGCCGGAGCGAAGGAGCAGCGAAGCGCTTCGAGCACG
TGCACGCCGCAATGGGAGGGGAGGCGTCAACAGCGTCTTTATCGGCCGCG
GCGGCGGTGGCCAAGGGCCTACCGGATTTCGTCCGGCGGGTGCTCTATCC
GGAGTCGTTCCGTGCCGAACGGGGCTCTCAGGTGGGTAAAAAAGAGAGCG
CTTCGGTGCCGAATCGGTCTTCAAATCAAACTTGCTCGGTCTGTCTTCAG
CTTTCTGTTCGGCAGCAATGGTAACCTAAACAGAGTTACTGACTCTCGCC
CGAACAATATTCTGTTCTAAGCAATCCTGAATTTTACCAACATCCTTCTG
CTTCGTGCCAAAGAAGTTAACAATCGCTGAAATATGATCTTTTGGGATAG
CCGCGCTCTTTTTCTTGGCTTCTCTTACCCTCCTTCTGTTTTCCCATCCG
TTTCTTTCATTGTCAATTTCCTGTGCCGTCTGCGTTCTCATTCGGGTCGG
CAGGTTGTCGGAAATTGCTACACGCATGGTCAACGTTGCGACGGAGGAGA
TGACATCTGGATGGAGATCGGTGCGTGAAATGGCGGTGCATCTTCTTCTG
CTTCTTCACTTCGCTAGAGATCGCTTGGCGACTTCCTTTGAATAATTCTG
CGACCCTTTTTTCCCTTCTCTTTCCCTCCACCTCCAGCCAGAGATTCCTT
GCCCTTTTTCTTGCCATGCATGGACCGCTCGCCATCCGTCCGTCTGACAA
TCTTTGCCTGGCCGACAGGTATCCGCGACAAGGATGTCCGCGTCCGGTGC
TTGCTCAACTACCGCTTTGCGGCTGGAACTGACGCCAGGGACGCAGCAGC
AGTTGCATCTTCACTAGAGGCTGCAGATCCGACCCGCATGGACGTGGAAA
GCGTGTACGTCGTGCGGGAGGGACTTTGGCGGCTCCCGATGGTAGACGCG
GCGGCAGAGGTGAGAGTCAGGAACCGGCCTTGCAAGTGGTTTGCCGACGC
TTCTTGCCTTTACTTTGCCTTTCCGGGTTCGTTGTTTGGCGCGACCCTGT
CTCTTCGCACGTTTTATAGCCATATGTTTAGTTTCTCCTCCTCATCGCGC
TTTTGCCGCATTTTTGCTCGCCACGCGCGCCATCGGCACAGGAAAAGCTT
TACGGGGCGGCAGGCCGCGGCATCTTCGACCCGCCAACAGAGTCGCAGAA
CCAGCGATACTACACGATCTATGCCGCAGGAGGCCTTACTATTCGGTAAA
TACGCTTCCTGATTTTCCTTGCCACTTTCTTCTGTTTCTCCAGGCCGGCA
CCTCGACATCGTTGGTGGCGAGCCCTTCTCCTTTTCGGAAAAGGACAGGG
CACGCGTGGCACCGCGTTCGCCCCGCTGCCCGTTTTGGCGGTTCTTTCCA
TCCCGTTTGCGTCCGGCTGAGCTTTTATCTTTCATTGCCATTGCCGCTGC
TGCTGGTGCCGTCGCCGCCTCCGCTACGGTCGCCGCCGCCATTATTGCAG
GTTTCCCATCTACGTGGAGACGGGCGGCGCGGCGGGCGGGGCGGGCAGCG
CGGAGTGCGTGTCCGTGGATTGGGCGGGCGGGGCGATGCGCTACCAGGTC
GACCGGAAGATGCGGGCGGGGTTGATGGCGGCGAACGGTGGCTGCGAGGG
GTTGGAGCTCACGGAGATCCAGTCAGAGGACGCCGAACGGTACGCGCCGT
CGTCGGCTTCGTGAGCGGCGCGGCCACGCTTAATATAGTGGTCAAGCCGC
AGTCGGCCGCCTCTTCTATGAAACGGTTGCACTGCCGGGAGCAGTGCGGA
GGGTCGGCGCCGTATTTCGTACCCTCATGCCGTCTCGCTTCTCCAACGCG
CTAGTGGCACTGGGCGCCGCGAACCCTCAAACCCTCCCCGAAAGATAAGA
AGATACGCCCGGCCTGAATCTAGGGGCACCATGACTTCGAAAGACGTAAT
TGAAATCGGAGATAGTGACGACGAGGAAATCCAAAGGACAGCGCCGGCTT
TAAATTCAGAGGGGATTGATTCCCATGTCGACCTTGTGGAAGTGGTGGAG
ATGGTCCCGCCGCCGCCTTCTTCTTCGACCGGCGTGTCGTCGACCCCTTG
TGCCTCTATCGCGGGAGGTCCTCATGTCTCGTTCGGCGACGGCGGGGTCT
CCTCCTCTTCAGCTGGGTCTCTTCCCTTCTCTACAACTTGCTACGCGTGC
CATGAAAACGGCCCTCTCGACAGGTTGTACAGCTTGGATCCGTGCAATCA
CAAGCTGTGCTCACATTGCGCCGCGAGCGCCGCGGCGACAGCTTTGACTG
GGGTGGCGGCGTGTCCCGTCTGCAAGAAGGAGCTGTCTGTGCGAGACGTG
CGCCTTCTCCTTTCCAACACCGACTGGCGCACCCTGCAGCAGCGCCGCCT
CCAGAAGTTCCGCGCGCTGCTGGCGCAGGGCGGAGCGAGTTGCCCGGCCT
GCTTGACGCCCCTACCGCTCTTCTTCGGGACCAGCAGCCAGCACGGCTCC
ACCATGCAGTCGCGCTGTGACGGCTCTGCGGGTGTCGCCAAGACGGCCTG
CGGTAGCTGCGGCGCCGTGGTCTGCCGCCTGTGCCGAGCGGCGTGGACGG
GCGGCCACGCCTGCTCCACTGCGTCGCTACTCGGCCTCGAAGTCCTCCTC
CGTCTGCTGGAGCAGCACTGGACGACCGAT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6362:93..3472-

>mRNA_P-wetherbeei_contig6362.1.2 ID=mRNA_P-wetherbeei_contig6362.1.2|Name=mRNA_P-wetherbeei_contig6362.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=750bp|location=Sequence derived from alignment at P-wetherbeei_contig6362:93..3472- (Phaeothamnion wetherbeei SAG_119_79)
ATGACTTCGAAAGACGTAATTGAAATCGGAGATAGTGACGACGAGGAAAT
CCAAAGGACAGCGCCGGCTTTAAATTCAGAGGGGATTGATTCCCATGTCG
ACCTTGTGGAAGTGGTGGAGATGGTCCCGCCGCCGCCTTCTTCTTCGACC
GGCGTGTCGTCGACCCCTTGTGCCTCTATCGCGGGAGGTCCTCATGTCTC
GTTCGGCGACGGCGGGGTCTCCTCCTCTTCAGCTGGGTCTCTTCCCTTCT
CTACAACTTGCTACGCGTGCCATGAAAACGGCCCTCTCGACAGGTTGTAC
AGCTTGGATCCGTGCAATCACAAGCTGTGCTCACATTGCGCCGCGAGCGC
CGCGGCGACAGCTTTGACTGGGGTGGCGGCGTGTCCCGTCTGCAAGAAGG
AGCTGTCTGTGCGAGACGTGCGCCTTCTCCTTTCCAACACCGACTGGCGC
ACCCTGCAGCAGCGCCGCCTCCAGAAGTTCCGCGCGCTGCTGGCGCAGGG
CGGAGCGAGTTGCCCGGCCTGCTTGACGCCCCTACCGCTCTTCTTCGGGA
CCAGCAGCCAGCACGGCTCCACCATGCAGTCGCGCTGTGACGGCTCTGCG
GGTGTCGCCAAGACGGCCTGCGGTAGCTGCGGCGCCGTGGTCTGCCGCCT
GTGCCGAGCGGCGTGGACGGGCGGCCACGCCTGCTCCACTGCGTCGCTAC
TCGGCCTCGAAGTCCTCCTCCGTCTGCTGGAGCAGCACTGGACGACCGAT
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