mRNA_P-wetherbeei_contig6359.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6359.1.1
Unique NamemRNA_P-wetherbeei_contig6359.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6359.1.1 vs. uniprot
Match: A0A7S3XQH4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XQH4_HETAK)

HSP 1 Score: 92.8 bits (229), Expect = 1.360e-20
Identity = 52/107 (48.60%), Postives = 70/107 (65.42%), Query Frame = 1
Query:    1 PQVLAAAIVLSLHWNDDDVCDAAHRNNWRLWATVQAVRLAAHMVVSGILLKLGPDPAAAVPGRSMAVRRAR-ARAAALLTNAKAGLEAVGLVWFVVGNMSLFSADDK 318
            PQ++AAA+VLSLHW+DD VCDA HR  W+ WA V A RLA   V +G+L+ L            + +RR R AR   +L+NA+ G++A+GL+WFVVGNM LF   + 
Sbjct:   42 PQLVAAAVVLSLHWDDDAVCDADHRERWKWWAAVAAARLA---VYTGLLVAL----------YLVLLRRPRDAREVIVLSNARNGVDALGLIWFVVGNMWLFGQTES 135          
BLAST of mRNA_P-wetherbeei_contig6359.1.1 vs. uniprot
Match: A0A7S2DZB6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DZB6_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 9.240e-19
Identity = 47/106 (44.34%), Postives = 63/106 (59.43%), Query Frame = 1
Query:    1 PQVLAAAIVLSLHWNDDDVCDAAHRNNWRLWATVQAVRLAAHMVVSGILLKLGPDPAAAVPGRSMAVRRARARAAALLTNAKAGLEAVGLVWFVVGNMSLFSADDK 318
            PQ++AA +VLSLHW DD VCDA HR  WR+WA +  +R+  HMV   I L +G         R +  +  + R   +L N +  L+A GLVWF+VGNM LF   D+
Sbjct:   90 PQIVAAIVVLSLHWPDDSVCDAEHRLKWRVWALIATIRMVLHMVT--IFLIIGVS-------RMVTQQDRQTRLLMILHNLRNLLDAAGLVWFLVGNMWLFGGSDE 186          
BLAST of mRNA_P-wetherbeei_contig6359.1.1 vs. uniprot
Match: A0A835Z0W6_9STRA (RING-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0W6_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 1.840e-15
Identity = 39/106 (36.79%), Postives = 54/106 (50.94%), Query Frame = 1
Query:    1 PQVLAAAIVLSLHWNDDDVCDAAHRNNWRLWATVQAVRLAAHMVVSGILLKLGPDPAAAVPGRSMAVRRARARAAALLTNAKAGLEAVGLVWFVVGNMSLFSADDK 318
            PQ++  A VL+ HW DD  CDA HR  WR+W+ ++   +A H  +     + G                ARA  +  L  AK  LEA+GL+WFV GN+ LF   D+
Sbjct:   10 PQIIGGAFVLAAHWRDDAACDAEHRARWRVWSVLELAIIAGHTAIRAATWRAG---------------EARADVSHALATAKNALEALGLIWFVAGNLWLFGGQDE 100          
BLAST of mRNA_P-wetherbeei_contig6359.1.1 vs. uniprot
Match: A0A7S2V5V5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V5V5_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 2.460e-15
Identity = 44/107 (41.12%), Postives = 59/107 (55.14%), Query Frame = 1
Query:    1 PQVLAAAIVLSLHWNDDDVCDAAHRNNWRLWATVQAVRLAAHMVVSGILLKLGPDPAAAVPGRSMAVRRAR-ARAAALLTNAKAGLEAVGLVWFVVGNMSLFSADDK 318
            PQ++AA  VLSLHW D   CD   R  WR WA +  VR+A + VV  +L                 + R R +R  ALL+N + G++A+GL+WFVVGNM LF   + 
Sbjct:  109 PQIVAAIAVLSLHWGDTFACDPERRQRWRWWALISTVRMAIYTVVMVVLY-------------FFTLHRPRDSREVALLSNLRNGVDALGLIWFVVGNMWLFGQSES 202          
BLAST of mRNA_P-wetherbeei_contig6359.1.1 vs. uniprot
Match: F0Y3Y0_AURAN (RING-type domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y3Y0_AURAN)

HSP 1 Score: 76.6 bits (187), Expect = 3.260e-14
Identity = 48/110 (43.64%), Postives = 61/110 (55.45%), Query Frame = 1
Query:    1 PQVLAAAIVLSLHWNDD-DVCDAAHRNNWRLWATVQAVRLAAHMVVSGILLKLGPDPAAAVPGRSMAVRRARARAAALLTNAKAGLEAVGLVWFVVGNMSLFS-ADDKDA 324
            PQV+  A V    W+ D DVCDA  R  WR+W     +RLAA  VV+G+  +  P P    P    A RR   R   ++TNA+  L+A+ L+WFVVGNM L   ADD  A
Sbjct:   83 PQVVVLACVFFFEWDADLDVCDATARAQWRVWGFFHGLRLAATTVVAGLRWRFAPRPP---PDADRASRR---RYLVMVTNARNSLDALALIWFVVGNMWLLGGADDSCA 186          
BLAST of mRNA_P-wetherbeei_contig6359.1.1 vs. uniprot
Match: A0A7S3LZ97_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3LZ97_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 4.230e-13
Identity = 41/105 (39.05%), Postives = 56/105 (53.33%), Query Frame = 1
Query:    1 PQVLAAAIVLSLHWNDDDVCDAAHRNNWRLWATVQAVRLAAHMVVSGILLKLGPDPAAAVPGRSMAVRRARARAAALLTNAKAGLEAVGLVWFVVGNMSLFSADD 315
            PQVLA+ IVL +HWND DVCDA H   W+LW+   A R+ A + +   + +           RS  +    A  +  + N +  LE  G +WF+VGNM LF  DD
Sbjct:   68 PQVLASFIVLGMHWNDPDVCDATHTRRWKLWSFFAACRMFAFIGLGCYVERY----------RSWLIEHVEA--SNRVRNMRNLLEGCGFLWFIVGNMWLFGDDD 160          
BLAST of mRNA_P-wetherbeei_contig6359.1.1 vs. uniprot
Match: D7FY42_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY42_ECTSI)

HSP 1 Score: 66.6 bits (161), Expect = 7.040e-12
Identity = 34/100 (34.00%), Postives = 54/100 (54.00%), Query Frame = 1
Query:    1 PQVLAAAIVLSLHWNDDDVCDAAHRNNWRLWATVQAVRLAAHMVVSGILLKLGPDPAAAVPGRSMAVRRARARAAALLTNAKAGLEAVGLVWFVVGNMSL 300
            P + A  ++L+LHW D DVCD  HR  W+ WA +  VR+   M+++ +++            R+ A+         L +N +  L+ VGLVWFV+G+M L
Sbjct:   27 PLIAAGVVILTLHWQDTDVCDVEHRRKWKWWALLSVVRM---MLITPVVMVRWRVEGQREEDRNQAIDH-------LSSNMRNSLDIVGLVWFVIGHMWL 116          
BLAST of mRNA_P-wetherbeei_contig6359.1.1 vs. uniprot
Match: A0A6S8S1Z2_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A6S8S1Z2_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 2.660e-9
Identity = 40/103 (38.83%), Postives = 56/103 (54.37%), Query Frame = 1
Query:    1 PQVLAAAIVLSLHWNDDDVCDAAHRNNWRLWATVQAVRLAAHMVVSGILLKLGPDPAAAVPGRSMAVRRARARAAALLTNAKAGLEAVGLVWFVVGNMSLFSA 309
            PQ++A  +V + ++N++ VC    R  WR W  V A+RL A  +VS    +L     A  P      RR RA AA    NA+  L+A+ L+WFVVGNM L  +
Sbjct:   63 PQIIAVIVVFA-YFNENKVCSVTARRQWRAWGIVHALRLTAGTLVSAGRARLAAT--AGPPPEPEGRRRLRALAA----NARNSLDALALIWFVVGNMWLLGS 158          
BLAST of mRNA_P-wetherbeei_contig6359.1.1 vs. uniprot
Match: K8YR69_NANGC (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YR69_NANGC)

HSP 1 Score: 62.8 bits (151), Expect = 3.210e-9
Identity = 36/104 (34.62%), Postives = 57/104 (54.81%), Query Frame = 1
Query:    1 PQVLAAAIVLSLHWNDDDVCDAAHRNNWRLWATVQAVRLAAHMVVSGILLKLGPDPAAAVPGRSMAVRRARARAAALLTNAKAGLEAVGLVWFVVGNMSLFSAD 312
            PQ++AA ++LS +W+D   C+ +    W+ +A + A+R+  ++     L +L         GR  A  R        L++A+ GL+A GL+WFVVGNM LF  D
Sbjct:   40 PQIIAAVVILSKYWHDT-TCEPSETTKWKTYALIAALRMFLYVSSVSALYRLN--------GRMPATTRLMR----FLSHARNGLDAFGLIWFVVGNMWLFGGD 130          
BLAST of mRNA_P-wetherbeei_contig6359.1.1 vs. uniprot
Match: A0A4D9DBP5_9STRA (RING-type domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DBP5_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 3.270e-9
Identity = 36/104 (34.62%), Postives = 57/104 (54.81%), Query Frame = 1
Query:    1 PQVLAAAIVLSLHWNDDDVCDAAHRNNWRLWATVQAVRLAAHMVVSGILLKLGPDPAAAVPGRSMAVRRARARAAALLTNAKAGLEAVGLVWFVVGNMSLFSAD 312
            PQ++AA ++LS +W+D   C+ +    W+ +A + A+R+  ++     L +L         GR  A  R        L++A+ GL+A GL+WFVVGNM LF  D
Sbjct:   79 PQIIAAVVILSKYWHDT-TCEPSETTKWKTYALIAALRMFLYVSSVSALYRLN--------GRMPATTRLMR----FLSHARNGLDAFGLIWFVVGNMWLFGGD 169          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6359.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A7S3XQH4_HETAK1.360e-2048.60Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2DZB6_9STRA9.240e-1944.34Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A835Z0W6_9STRA1.840e-1536.79RING-type domain-containing protein n=1 Tax=Tribon... [more]
A0A7S2V5V5_9STRA2.460e-1541.12Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
F0Y3Y0_AURAN3.260e-1443.64RING-type domain-containing protein n=1 Tax=Aureoc... [more]
A0A7S3LZ97_9STRA4.230e-1339.05Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
D7FY42_ECTSI7.040e-1234.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6S8S1Z2_9STRA2.660e-938.83Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
K8YR69_NANGC3.210e-934.62Uncharacterized protein n=1 Tax=Nannochloropsis ga... [more]
A0A4D9DBP5_9STRA3.270e-934.62RING-type domain-containing protein n=1 Tax=Nannoc... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6359contigP-wetherbeei_contig6359:101..427 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog44056.XP_009034871.1
PFAMszf-RING_2
Model size327
Max annot lvl2759|Eukaryota
KEGG koko:K13148,ko:K19041
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0003006,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009790,GO:0009791,GO:0009793,GO:0009987,GO:0010154,GO:0010498,GO:0016020,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0019941,GO:0022414,GO:0030163,GO:0031090,GO:0032182,GO:0032183,GO:0032184,GO:0032446,GO:0032501,GO:0032502,GO:0036211,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0051603,GO:0061458,GO:0061630,GO:0061659,GO:0070647,GO:0071704,GO:0098588,GO:0098805,GO:0140096,GO:1901564,GO:1901565,GO:1901575
Exons1
Evalue5.34e-15
EggNOG OGsKOG0800@1|root,KOG0800@2759|Eukaryota
EC2.3.2.27
Descriptionubiquitin-protein transferase activity
Cds size327
COG categoryO
BRITEko00000,ko01000,ko03041,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186907.379698-CDS-P-wetherbeei_contig6359:100..4271683186907.379698-CDS-P-wetherbeei_contig6359:100..427Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6359 101..427 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6359.1.1prot_P-wetherbeei_contig6359.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6359 101..427 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6359.1.1

>prot_P-wetherbeei_contig6359.1.1 ID=prot_P-wetherbeei_contig6359.1.1|Name=mRNA_P-wetherbeei_contig6359.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=109bp
PQVLAAAIVLSLHWNDDDVCDAAHRNNWRLWATVQAVRLAAHMVVSGILL
KLGPDPAAAVPGRSMAVRRARARAAALLTNAKAGLEAVGLVWFVVGNMSL
FSADDKDA*
back to top

mRNA from alignment at P-wetherbeei_contig6359:101..427-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6359.1.1 ID=mRNA_P-wetherbeei_contig6359.1.1|Name=mRNA_P-wetherbeei_contig6359.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=327bp|location=Sequence derived from alignment at P-wetherbeei_contig6359:101..427- (Phaeothamnion wetherbeei SAG_119_79)
CCTCAGGTGCTGGCGGCGGCCATCGTGCTGTCGCTCCACTGGAACGACGA CGATGTCTGCGACGCCGCCCACCGCAACAACTGGCGCCTCTGGGCTACCG TCCAGGCCGTGCGACTTGCCGCCCACATGGTGGTGTCGGGAATTCTTCTG AAATTGGGGCCGGATCCGGCGGCGGCGGTGCCGGGCCGCAGCATGGCAGT GCGCCGGGCGCGGGCGCGAGCGGCGGCGCTTCTGACGAACGCCAAGGCTG GGCTGGAGGCGGTGGGGCTCGTGTGGTTTGTCGTGGGAAACATGTCACTC TTTTCGGCCGACGACAAGGACGCGTGA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig6359:101..427-

>mRNA_P-wetherbeei_contig6359.1.1 ID=mRNA_P-wetherbeei_contig6359.1.1|Name=mRNA_P-wetherbeei_contig6359.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=327bp|location=Sequence derived from alignment at P-wetherbeei_contig6359:101..427- (Phaeothamnion wetherbeei SAG_119_79)
CCTCAGGTGCTGGCGGCGGCCATCGTGCTGTCGCTCCACTGGAACGACGA
CGATGTCTGCGACGCCGCCCACCGCAACAACTGGCGCCTCTGGGCTACCG
TCCAGGCCGTGCGACTTGCCGCCCACATGGTGGTGTCGGGAATTCTTCTG
AAATTGGGGCCGGATCCGGCGGCGGCGGTGCCGGGCCGCAGCATGGCAGT
GCGCCGGGCGCGGGCGCGAGCGGCGGCGCTTCTGACGAACGCCAAGGCTG
GGCTGGAGGCGGTGGGGCTCGTGTGGTTTGTCGTGGGAAACATGTCACTC
TTTTCGGCCGACGACAAGGACGCGTGA
back to top