mRNA_P-wetherbeei_contig634.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig634.2.1
Unique NamemRNA_P-wetherbeei_contig634.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig634.2.1 vs. uniprot
Match: D7FHR8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHR8_ECTSI)

HSP 1 Score: 235 bits (599), Expect = 1.950e-72
Identity = 123/262 (46.95%), Postives = 172/262 (65.65%), Query Frame = 1
Query:   52 ADAFALAIVRGSKSFVVNHPVLSFSWVLGLVLSLLATGFTPPPEALNTYNKKLDDLEGWSESLVKAEEHMWRTEMTYRRSKGWF-SCDQLCRMNKKDYELARSHFQQLNTEYTAGIRDAKSHLGVFSDHGVGQAKDLFWSRLAGGRDFAKRATFYSAIRSALFVGMRRDQSLSEYLLQLFFNFIVNLTMGLIGALVTFLFSIWSVIWEYQPDPISATAFFLACALGAFSVVATWLLGLCAVTAGGVYGVVKAAEVSRLEAER 834
            AD F   +V  +K  V  HPV+S SWV+GL++S LA+G+TP   A+  Y  K+  L+   ES+++A+  M   +  YRRSKG F +C++ C  N+K++E  R  +  LN  Y  G  DAKS LG+FS+ GV + +DLFW +++GG+ FAKRAT + A+   +    RRD+ L+  + ++ F F+VNLTMGL  A+  FLFS+W+VIW YQPDP+S  AF    ALGA S++ATWLLGL AV   GVY V K AE +++EA R
Sbjct:   18 ADQFGALVVSNAKQLVKRHPVISVSWVVGLLVSTLASGYTPSTTAMQNYENKMIGLD--DESVMRAQGEMVYWDDIYRRSKGMFWTCNEQCTANRKEFERRRKTYLDLNKAYLKGEADAKSELGIFSEDGVEETRDLFWRKVSGGKQFAKRATMWDAMFVGIGTMTRRDEGLASIVARIAFRFVVNLTMGLFMAVFQFLFSMWTVIWSYQPDPLSTLAFAAMAALGAVSMLATWLLGLAAVGVTGVYTVAKLAETAQIEAAR 277          
BLAST of mRNA_P-wetherbeei_contig634.2.1 vs. uniprot
Match: A0A835Z0D4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0D4_9STRA)

HSP 1 Score: 211 bits (536), Expect = 6.830e-63
Identity = 107/247 (43.32%), Postives = 160/247 (64.78%), Query Frame = 1
Query:   73 IVRGSKSFVVNHPVLSFSWVLGLVLSLLATGFTPPPEALNTYNKKLDDLEGWSESLVKAEEHMWRTEMTYRRSKGWF-SCDQLCRMNKKDYELARSHFQQLNTEYTAGIRDAKSHLGVFSDHGVGQAKDLFWSRLAGGRDFAKRATFYSAIRSALFVGMRRDQSLSEYLLQLFFNFIVNLTMGLIGALVTFLFSIWSVIWEYQPDPISATAFFLACALGAFSVVATWLLGLCAVTAGGVYGVVKAAE 810
            + +G+    V HPV+S SWV GL L+++ATGFTP P+A+  Y+  ++DL+ +   L++A+       + Y  SKGWF  CD  C+ N K +  AR   +     Y   + +AKSHLG+FS  GV +A+DLFW R+AGGR+FA+R+T Y AI + +   MRRD S++EY++ +    + N+++G +GALVTFL+S+W VI  +QP  + A  FF+  +L A SV+AT+ LGL A  AG V G+V+ A+
Sbjct:   23 VAKGAAGVAVRHPVISLSWVAGLFLAIMATGFTPAPQAMEAYSFAVEDLKFYENELLQAQYEYDSWNVEYHESKGWFWQCDDHCQENYKSFVQAREDLRGKQRSYDGKLAEAKSHLGIFSTLGVAEARDLFWRRVAGGREFARRSTLYDAIFAGI-GSMRRDSSMAEYVMTMAVQVLWNMSIGAVGALVTFLWSVWGVIATFQPSAVVALLFFMCASLAAGSVIATFFLGLGAAGAGAVVGMVQLAK 268          
BLAST of mRNA_P-wetherbeei_contig634.2.1 vs. uniprot
Match: A0A7S2WRM9_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2WRM9_9STRA)

HSP 1 Score: 176 bits (446), Expect = 1.650e-49
Identity = 96/268 (35.82%), Postives = 156/268 (58.21%), Query Frame = 1
Query:   13 HMAETRVAERPSAADAFALAIVRGSKSFVVNHPVLSFSWVLGLVLSLLATGFTPPPEALNTYNKKLDDLEGWSESLVKAEEHMWRTEMTYRRSKGWFSCDQLCRMNKKDYELARSHFQQLNTEYTAGIRDAKSHLGVFSDHGVGQAKDLFWSRLAGGRDFAKRATFYSAIRSALFVGMRRDQSLSEYLLQLFFNFIVNLTMGLIGALVTFLFSIWSVIWEYQPDPISATAFFLACALGAFSVVATWLLGLCAVTAGGVYGVVKAAEVS 816
            H   +  AE   + D  + A++R   +F   H V++ ++++G+V+ L A GF    E    Y + L  ++   + + +A+      E  YR SKGWFSCD  C  N ++Y+L  +   ++  E+     +AKS +GVFS++GV + +DLFWS+ AGG+DFAKR++++  I  ++   M RD+SL E+ L+   N ++N T+GL+GAL+ F + +W +I  YQP  + A  FF+  ++ A S V ++LLGL +  AG VY   K A  S
Sbjct:    4 HRRHSGTAETQLSVDDVSTALIRHGVAFAKRHYVMTSAYIVGVVIMLFAGGFAVSMEQEQKYERILSQID--LKRMHRAQVAAQNAEYNYRESKGWFSCDNHCMANYEEYQLNLARLAEVEKEFAEIQSEAKSVVGVFSEYGVQEVRDLFWSQFAGGKDFAKRSSWWDLIFMSI-GSMGRDESLMEFALRFLMNMLMNFTIGLVGALIGFYWFVWGIITSYQPSVLIAFVFFMLASIAATSCVVSFLLGLYSAAAGSVYVAAKIASNS 268          
BLAST of mRNA_P-wetherbeei_contig634.2.1 vs. uniprot
Match: A0A2R5GIG8_9STRA (Uncharacterized protein n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GIG8_9STRA)

HSP 1 Score: 171 bits (434), Expect = 1.310e-47
Identity = 92/252 (36.51%), Postives = 150/252 (59.52%), Query Frame = 1
Query:   61 FALAIVRGSKSFVVNHPVLSFSWVLGLVLSLLATGFTPPPEALNTYNKKLDDLEGWSESLVKAEEHMWRTEMTYRRSKGWFSCDQLCRMNKKDYELARSHFQQLNTEYTAGIRDAKSHLGVFSDHGVGQAKDLFWSRLAGGRDFAKRATFYSAIRSALFVGMRRDQSLSEYLLQLFFNFIVNLTMGLIGALVTFLFSIWSVIWEYQPDPISATAFFLACALGAFSVVATWLLGLCAVTAGGVYGVVKAAEVS 816
            F++ ++ G   F   + V +  W+ GLVL L ATGF    +   TYN+ L  ++       + + ++W+ +  Y +SKGWFSCD+ C  N ++   A+ +   +  E+ +   +AK  +G+FS++GV + ++LFWS+ AGGR+FA+R+++Y  I  ++   M RD+SL E+ L+L  N ++N T+GLIGALV F + +W V+  YQP  + A  FF   ++ A S+VA +L GL +  AG V+   K A  S
Sbjct:   31 FSMIMINGGVRFAKRNKVTTGMWIFGLVLVLFATGFQVSHQEEQTYNRILSKIDYKRLDAAQQQVYVWQHK--YAQSKGWFSCDEACHENYENLRAAQDNLYSIEKEFASISSEAKQTVGIFSEYGVQEVRELFWSQFAGGREFAQRSSWYDFIFMSI-SSMGRDESLVEFGLRLIVNMLLNFTIGLIGALVGFYYYLWGVVAAYQPSFLLAVGFFFLASVAATSLVAAYLAGLYSAAAGTVFVAAKIATQS 279          
BLAST of mRNA_P-wetherbeei_contig634.2.1 vs. uniprot
Match: A0A7S2A693_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A693_TRICV)

HSP 1 Score: 170 bits (431), Expect = 2.440e-47
Identity = 101/258 (39.15%), Postives = 150/258 (58.14%), Query Frame = 1
Query:   76 VRGSKSFVVNHPVLSFSWVLGL-VLSLLATGFTPPPEALNTYNKKLDDLEGWSESLVKAEEHMWRTEMTYRRSKGWFSCDQLCRMNKKDYELARSHFQQLNTEYTAGIRDAKSHLGVFSDHGVGQAKDLFWSRLAGGRDFAKRATFYSAIRSALFVGMR---RDQSLSEYLLQLFFNFIVNLTMGLIGALVTFLFSIWSVIWEYQPDPISATAFFLACALGAFSVVATWLLGLCAVTAGGVYGVVKAAEVS-RLEAER 834
            +RG+ +F   H V+S S+V GL VL L+ +G     +    Y+  +  ++  +E    A          YR SKGWFSCD LC+ NK   E AR+  + +  E    + DAK   G+FS+ GVG+ KD FW R   G+ FAKR + + A    +F+GMR   RD+S +EY L++    ++N ++GL+ AL  F+F +W ++  YQPDP++A AFFL+    AF+ V T+LL +   TAGG+YG+ K AE + R+E  R
Sbjct:   23 LRGAAAFAKRHKVISGSYVFGLLVLLLVGSGTKLTLDQRRQYDHIMSTIDLNAE--FDASNRYAHAMHAYRASKGWFSCDSLCQRNKARMEDARAALEDIRAEGYNRMSDAKRVAGLFSEVGVGEVKDSFWERFHAGKRFAKRQSMWDA----MFMGMRSMGRDESFAEYALKMIVQVLINFSIGLVMALFIFIFGLWGIVRSYQPDPLTALAFFLSAVCAAFAFVTTYLLLIYGATAGGLYGMAKMAETNMRIEQGR 274          
BLAST of mRNA_P-wetherbeei_contig634.2.1 vs. uniprot
Match: A0A7S1D1B9_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D1B9_CYCTE)

HSP 1 Score: 169 bits (428), Expect = 4.890e-47
Identity = 102/262 (38.93%), Postives = 156/262 (59.54%), Query Frame = 1
Query:   73 IVRGSKSFVVNHPVLSFSWVLG-LVLSLLATGFTPPPEALNTYNKKLDDLEGWSESLVKAEEHMWRTEMTYRRSKGWF-SCDQLCRMNKKDYELARSHFQQLNTEYTAGIRDAKSHLGVFSDHGVGQAKDLFWSRLAGGRDFAKRATFYSAIRSALFVGMR---RDQSLSEYLLQLFFNFIVNLTMGLIGALVTFLFSIWSVIWEYQPDPISATAFFLACALGAFSVVATWLLGLCAVTAGGVYGVVKAAEVS---RLEAER 834
            IVRG   F   + VLS S++ G LVL  + +G     +    YNK +D ++  +E   +A +        Y+ +KGWF SCD LC+ NK+  + A+     +  E  A + DAK+  G+FS+ GV + K+ FWS    G+DFAKR++ + A    +F+G+R   RD++++EY L+L    + N ++GLI ALV F+  +W+++  YQP+PI A AFFL  AL AFS V ++LL +    AGG+YG+VK AE +   RL+ +R
Sbjct:    7 IVRGVTRFAHRNKVLSGSYLFGILVLIFMGSGTQLTLQQRREYNKIMDTIDIRAE--YEASQRYANARNAYQSTKGWFFSCDSLCQRNKQRMDRAKLDLDSVREEGNARMSDAKAVAGLFSEIGVDEVKESFWSYFQSGKDFAKRSSMWDA----MFIGLRSMSRDETMAEYALRLIIQILFNFSLGLIMALVIFVIGLWNIVSSYQPNPIVAVAFFLCAALAAFSFVISYLLVMYGAVAGGMYGIVKLAETNQRARLQEQR 262          
BLAST of mRNA_P-wetherbeei_contig634.2.1 vs. uniprot
Match: A0A7S2VYJ2_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2VYJ2_9STRA)

HSP 1 Score: 169 bits (429), Expect = 5.540e-47
Identity = 97/260 (37.31%), Postives = 150/260 (57.69%), Query Frame = 1
Query:   43 PSAADAFALAIVRGSKSFVVNHPVLSFSWVLG-LVLSLLATGFTPPPEALNTYNKKLDDLEGWSESLVKAEEHMWRTEMTYRRSKGWFSCDQLCRMNKKDYELARSHFQQLNTEYTAGIRDAKSHLGVFSDHGVGQAKDLFWSRLAGGRDFAKRATFYSAIRSALFVGMR---RDQSLSEYLLQLFFNFIVNLTMGLIGALVTFLFSIWSVIWEYQPDPISATAFFLACALGAFSVVATWLLGLCAVTAGGVYGVVKAAE 810
            P+A D  ++ +VRG  +F   H V+S S++LG LVL +  TG     +    YN  ++ ++  +E    A +   R    Y+ SKGWF+CD LC+ NK+  E  +    ++  E  A + DAKS  G+FS+ GV + KD FW     G+ FAKR + + A    LF+GMR   RD+++ EY L+L    ++N ++GLIGAL  F++ +W+++  YQPDP++A AFF+      F+ V+T+L  +    AG VYG+ K  E
Sbjct:   15 PNAGDMGSI-VVRGVTNFARKHKVISGSYILGVLVLLIFTTGTKLTLQQRQQYNSIMNTIDLKAE--YDASDRYGRAAHAYQSSKGWFTCDGLCQRNKRRMEAVKQDLDEVRAEGNARMSDAKSKAGLFSEVGVAEVKDSFWDYFHKGKQFAKRRSMWDA----LFMGMRSMGRDENILEYCLKLLLQVLINFSLGLIGALFIFVWGLWTIVNSYQPDPLTAAAFFVGATCAGFAFVSTYLFLIYGAAAGSVYGLAKVVE 267          
BLAST of mRNA_P-wetherbeei_contig634.2.1 vs. uniprot
Match: A0A7S0C9V1_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C9V1_9STRA)

HSP 1 Score: 169 bits (429), Expect = 7.250e-47
Identity = 102/263 (38.78%), Postives = 154/263 (58.56%), Query Frame = 1
Query:   43 PSAADAFALAIVRGSKSFVVNHPVLSFSWVLGLVLSLLA-TGFTPPPEALNTYNKKLDDLEGWSESLVKAEEHMWRTEMTYRRSKGWF-SCDQLCRMNKKDYELARSHFQQLNTEYTAGIRDAKSHLGVFSDHGVGQAKDLFWSRLAGGRDFAKRATFYSAIRSALFVGMR---RDQSLSEYLLQLFFNFIVNLTMGLIGALVTFLFSIWSVIWEYQPDPISATAFFLACALGAFSVVATWLLGLCAVTAGGVYGVVKAAEVS 816
            P+++D  ALA V G K+F   + V++ S++ GL++ +L  +G+    E    YN+ +  ++  +E    A          YR +KGWF SCD LC+ NK   E A+     +  E    + DAK+  G+FS+ GVG+ KD FW     G+ FAKR T + A    LF GMR   RD+S+ EY+L++  N ++N ++GLI AL  F+F +WS++  YQPDP++A AFFL+ +  AF+ V+T+L  +    AG VYGV K AE +
Sbjct:   24 PNSSDFGALA-VSGVKAFAKRNKVITGSYLFGLIIVVLGGSGYQLSREQSIQYNQIMSTIDLKAE--YDASNKYASANQAYRATKGWFFSCDSLCQRNKSRMEHAKRDLGMIRAEGYNRMSDAKASAGIFSEVGVGEVKDSFWEYFQSGKQFAKRQTMWDA----LFTGMRSMGRDESMMEYVLKVLMNALINFSLGLIMALFIFIFGLWSIVKSYQPDPLTAVAFFLSASCAAFAFVSTFLFFMYGAAAGSVYGVAKLAEAN 279          
BLAST of mRNA_P-wetherbeei_contig634.2.1 vs. uniprot
Match: A0A1E7FAB6_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FAB6_9STRA)

HSP 1 Score: 167 bits (424), Expect = 3.990e-46
Identity = 94/260 (36.15%), Postives = 153/260 (58.85%), Query Frame = 1
Query:   73 IVRGSKSFVVNHPVLSFSWVLG-LVLSLLATGFTPPPEALNTYNKKLDDLEGWSESLVKAEEHMWRTEMTYRRSKGWFSCDQLCRMNKKDYELARSHFQQLNTEYTAGIRDAKSHLGVFSDHGVGQAKDLFWSRLAGGRDFAKRATFYSAIRSALFVGMR---RDQSLSEYLLQLFFNFIVNLTMGLIGALVTFLFSIWSVIWEYQPDPISATAFFLACALGAFSVVATWLLGLCAVTAGGVYGVVKAAEVSRLEAERNG 840
            I+RG+  F   H V++  +VLG LV+ L+  G     +    YN  ++ ++   E+   A    +     YR +KGWFSCD LC+ NK+  + A+    ++  E    + DAK+  G+FS+ GVG+ +D FWS  + G+ FAKR + + A    +F+G+R   RD+++ EY +++    ++N ++GL+ ALV F+  +WS++  YQP+PI A AFF++ +  AFS V T+L  +    AGGVYGV+K AE   L+ ++ G
Sbjct:   32 IIRGASDFAKQHKVITGGYVLGILVIILIGGGSKLNYDQRREYNNIMNTID--VEAEYAASNDFFAANQNYRATKGWFSCDGLCQRNKRKMDDAKIRLDRIREEGNVRMSDAKNVAGLFSEIGVGEVQDAFWSYFSAGKKFAKRQSMWDA----MFMGIRSMGRDENMVEYGMKVLMQVLLNFSIGLVMALVMFVVGLWSIVRSYQPNPIVAVAFFVSASCAAFSFVTTYLFAIYGAAAGGVYGVLKIAE-GNLQIQQQG 284          
BLAST of mRNA_P-wetherbeei_contig634.2.1 vs. uniprot
Match: A0A7S2IIT0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2IIT0_9STRA)

HSP 1 Score: 167 bits (422), Expect = 7.490e-46
Identity = 94/252 (37.30%), Postives = 146/252 (57.94%), Query Frame = 1
Query:   73 IVRGSKSFVVNHPVLSFSWVLGL-VLSLLATGFTPPPEALNTYNKKLDDLEGWSESLVKAEEHMWRTEMTYRRSKGWFSCDQLCRMNKKDYELARSHFQQLNTEYTAGIRDAKSHLGVFSDHGVGQAKDLFWSRLAGGRDFAKRATFYSAIRSALFVGMR---RDQSLSEYLLQLFFNFIVNLTMGLIGALVTFLFSIWSVIWEYQPDPISATAFFLACALGAFSVVATWLLGLCAVTAGGVYGVVKAAEVS 816
            IV G+KSF   H V++ S++ GL +L ++ +G     E    YN  +  ++  +E    A          Y+ SKGWF+CD LC+ NK+  E A+    QL  E    + DAK+  G+FS+ GVG+ KD FW     G+ FAKR + + A    +F+GMR   RD+S+ EY+L++    ++N ++GLI  L  F+F +WS++  YQP+P++A AFFL+ A  AF+ V+T+L  +    AGG+YG  K  + +
Sbjct:   54 IVAGAKSFAKKHKVITGSYLFGLLILLIVGSGTKLTLEQQRQYNHIMSTIDVNAE--YDASTRYGHALQAYKASKGWFTCDSLCQRNKERMERAQYDLDQLRAEGYNRMSDAKAVAGIFSEVGVGEVKDSFWEYFHAGKRFAKRQSMWDA----MFMGMRSMSRDESMVEYMLKMLIQVLINFSLGLIMCLFIFIFGLWSIVRSYQPNPLTAVAFFLSAACAAFAFVSTYLFLIYGAAAGGLYGAAKIIQAN 299          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig634.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FHR8_ECTSI1.950e-7246.95Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z0D4_9STRA6.830e-6343.32Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2WRM9_9STRA1.650e-4935.82Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A2R5GIG8_9STRA1.310e-4736.51Uncharacterized protein n=1 Tax=Hondaea fermentalg... [more]
A0A7S2A693_TRICV2.440e-4739.15Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S1D1B9_CYCTE4.890e-4738.93Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A7S2VYJ2_9STRA5.540e-4737.31Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A7S0C9V1_9STRA7.250e-4738.78Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A1E7FAB6_9STRA3.990e-4636.15Uncharacterized protein n=1 Tax=Fragilariopsis cyl... [more]
A0A7S2IIT0_9STRA7.490e-4637.30Hypothetical protein (Fragment) n=1 Tax=Helicothec... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig634contigP-wetherbeei_contig634:508..2208 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FHR8
Model size1003
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons4
Evalue1.31e-73
EggNOG OGs28IGU@1|root,2QQTP@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-07_006530.1
Cds size891
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig634.2.1prot_P-wetherbeei_contig634.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig634 523..2111 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186905.8809028-UTR-P-wetherbeei_contig634:507..5221683186905.8809028-UTR-P-wetherbeei_contig634:507..522Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig634 508..522 +
1683186905.9364748-UTR-P-wetherbeei_contig634:2111..22081683186905.9364748-UTR-P-wetherbeei_contig634:2111..2208Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig634 2112..2208 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186905.8960857-CDS-P-wetherbeei_contig634:522..7941683186905.8960857-CDS-P-wetherbeei_contig634:522..794Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig634 523..794 +
1683186905.9064107-CDS-P-wetherbeei_contig634:955..11391683186905.9064107-CDS-P-wetherbeei_contig634:955..1139Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig634 956..1139 +
1683186905.915355-CDS-P-wetherbeei_contig634:1442..15911683186905.915355-CDS-P-wetherbeei_contig634:1442..1591Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig634 1443..1591 +
1683186905.9254007-CDS-P-wetherbeei_contig634:1825..21111683186905.9254007-CDS-P-wetherbeei_contig634:1825..2111Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig634 1826..2111 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig634.2.1

>prot_P-wetherbeei_contig634.2.1 ID=prot_P-wetherbeei_contig634.2.1|Name=mRNA_P-wetherbeei_contig634.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=297bp
MAETRVAERPSAADAFALAIVRGSKSFVVNHPVLSFSWVLGLVLSLLATG
FTPPPEALNTYNKKLDDLEGWSESLVKAEEHMWRTEMTYRRSKGWFSCDQ
LCRMNKKDYELARSHFQQLNTEYTAGIRDAKSHLGVFSDHGVGQAKDLFW
SRLAGGRDFAKRATFYSAIRSALFVGMRRDQSLSEYLLQLFFNFIVNLTM
GLIGALVTFLFSIWSVIWEYQPDPISATAFFLACALGAFSVVATWLLGLC
AVTAGGVYGVVKAAEVSRLEAERNGGGHGGGGGAGRPPPTRRIHYD*
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mRNA from alignment at P-wetherbeei_contig634:508..2208+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig634.2.1 ID=mRNA_P-wetherbeei_contig634.2.1|Name=mRNA_P-wetherbeei_contig634.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1701bp|location=Sequence derived from alignment at P-wetherbeei_contig634:508..2208+ (Phaeothamnion wetherbeei SAG_119_79)
CTCGTGTTTGCACACATGGCTGAGACGAGGGTCGCCGAGCGTCCTTCTGC GGCAGACGCCTTCGCTCTTGCAATTGTCAGAGGGAGCAAATCCTTCGTCG TAAATCATCCAGTCCTCAGCTTCTCGTGGGTCCTCGGGCTCGTGCTTTCC CTTCTCGCGACAGGATTCACGCCACCGCCAGAGGCGTTAAATACTTACAA CAAGAAGCTCGACGATCTCGAGGGATGGAGTGAATCGCTCGTCAAGGCGG AGGAGCACATGTGGCGGACTGAGATGACCTATCGAAGGTGAGTATCCTGG TTCAGTCTTGCAAGGCCGCTTTTCTTCATTGCGTTTTTTTAGTCTTTTCT TTAGCATTTCGTTCATTTTCAGCCCTCCCTCTCTCTTCGCCTCTTCCGAC AAAATCTGACTATGCGTTTGGCGCCGCGGGCGTGCCCCCCAAAACCAGGT CGAAGGGCTGGTTTAGCTGCGATCAGCTCTGCCGAATGAACAAGAAGGAC TATGAGCTAGCTCGCTCGCATTTTCAGCAGCTCAACACGGAGTACACGGC GGGGATTCGCGACGCCAAATCGCACTTGGGCGTCTTCAGCGACCACGGGG TCGGCCAGGCCAAAGACCTTTTCTGGTCGCGGGTGAGGCACAGCGGGCGA GGCGTTCATGTTCTCGCTTTGAGTCTAATCTTAGTTTTTATTGTAAGCTG TCAGCATTGCAAAGCAAGGGGAGAAGGGTAGCTCGTTTTGCTTAGGTCCT GTCTATGCTTCACACTGAGGGCCAATTTCCCGCCGTGCGGCTTGTTGCGT CTGCGACGAATCGGTAAATTCTTCCCGAAACTCGCTCCTGCTCTCAGGAA GCTCATCACTCTTTTCTAGTCTGCGTCGAACGAATGCGTTTCCCGTTTCG CTCCCGCGGACGCTCCTTGCTGACCCGGGCGGCAGCTGGCCGGCGGACGC GACTTTGCGAAGCGCGCCACCTTCTATTCGGCGATCCGGTCGGCGCTCTT CGTGGGGATGCGCCGCGACCAGTCCCTCTCCGAGTACCTGCTCCAGCTAT TCTTCAATTTTATCGTCAACTTGACGATGGGGCTGTGAGCGAAGACGAGG AAGAACCTTCAAGTTTTGTGTTCTCGCGCTATTGTCGCCACTGAACTATG CGTCGCACGTTTGAGTAGTTTGTGGCTCTGAATGGTCGTTTTGCTCGTGA GCGCCGCATTAAGTTATATGCTGCGCAGCCTGGCGGAATTGGTGTATCTC GTGATCCATTCATTTTCGTCATGTCAACAATCCATTAATTTCTGTTTCCT GGCGGCATCTTGCGGCAGAATCGGAGCGCTGGTGACATTCCTCTTCAGCA TCTGGTCCGTCATCTGGGAGTACCAGCCCGATCCAATCTCCGCGACGGCT TTCTTCCTGGCCTGCGCGCTCGGCGCCTTCAGCGTCGTCGCGACGTGGCT GCTGGGGCTCTGCGCGGTGACGGCTGGCGGCGTCTACGGCGTCGTCAAGG CCGCGGAGGTCAGTCGGCTCGAAGCGGAACGGAACGGAGGCGGACACGGC GGCGGCGGCGGCGCCGGGCGGCCGCCCCCCACACGGAGGATCCATTACGA CTGAGGGACTGACGGCACCGGCAGCAGCAGCAGCGAGCGGCAGTTGCGGC AATGGTGGCAGCGACGCAGCGTAATAAAGTAGTTGACGAACGCGTTTAAC C
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Coding sequence (CDS) from alignment at P-wetherbeei_contig634:508..2208+

>mRNA_P-wetherbeei_contig634.2.1 ID=mRNA_P-wetherbeei_contig634.2.1|Name=mRNA_P-wetherbeei_contig634.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=891bp|location=Sequence derived from alignment at P-wetherbeei_contig634:508..2208+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCTGAGACGAGGGTCGCCGAGCGTCCTTCTGCGGCAGACGCCTTCGC
TCTTGCAATTGTCAGAGGGAGCAAATCCTTCGTCGTAAATCATCCAGTCC
TCAGCTTCTCGTGGGTCCTCGGGCTCGTGCTTTCCCTTCTCGCGACAGGA
TTCACGCCACCGCCAGAGGCGTTAAATACTTACAACAAGAAGCTCGACGA
TCTCGAGGGATGGAGTGAATCGCTCGTCAAGGCGGAGGAGCACATGTGGC
GGACTGAGATGACCTATCGAAGGTCGAAGGGCTGGTTTAGCTGCGATCAG
CTCTGCCGAATGAACAAGAAGGACTATGAGCTAGCTCGCTCGCATTTTCA
GCAGCTCAACACGGAGTACACGGCGGGGATTCGCGACGCCAAATCGCACT
TGGGCGTCTTCAGCGACCACGGGGTCGGCCAGGCCAAAGACCTTTTCTGG
TCGCGGCTGGCCGGCGGACGCGACTTTGCGAAGCGCGCCACCTTCTATTC
GGCGATCCGGTCGGCGCTCTTCGTGGGGATGCGCCGCGACCAGTCCCTCT
CCGAGTACCTGCTCCAGCTATTCTTCAATTTTATCGTCAACTTGACGATG
GGGCTAATCGGAGCGCTGGTGACATTCCTCTTCAGCATCTGGTCCGTCAT
CTGGGAGTACCAGCCCGATCCAATCTCCGCGACGGCTTTCTTCCTGGCCT
GCGCGCTCGGCGCCTTCAGCGTCGTCGCGACGTGGCTGCTGGGGCTCTGC
GCGGTGACGGCTGGCGGCGTCTACGGCGTCGTCAAGGCCGCGGAGGTCAG
TCGGCTCGAAGCGGAACGGAACGGAGGCGGACACGGCGGCGGCGGCGGCG
CCGGGCGGCCGCCCCCCACACGGAGGATCCATTACGACTGA
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