mRNA_P-wetherbeei_contig6335.8.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6335.8.1
Unique NamemRNA_P-wetherbeei_contig6335.8.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6335.8.1 vs. uniprot
Match: A0A6A5KX99_LUPAL (Uncharacterized protein ycf68 n=2 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5KX99_LUPAL)

HSP 1 Score: 104 bits (259), Expect = 4.350e-26
Identity = 56/83 (67.47%), Postives = 58/83 (69.88%), Query Frame = 1
Query:    1 FNSSRREEPYQGLT---WDCRAGKPVGLRGCPTGAAWLSSARVVRCWVKSRNERNPCGQLSFSGQTAGSKPEEGGDDVKSAWP 240
            FNS +R EPYQ LT   W    G      G  TGAAWLSSARVVRCWVKSRNERNP   L  SG TAG KPEEGGDDVKS+WP
Sbjct:    3 FNSKQRAEPYQPLTCPLWAREIGS-FSSAGWNTGAAWLSSARVVRCWVKSRNERNP--YLGHSGGTAGDKPEEGGDDVKSSWP 82          
BLAST of mRNA_P-wetherbeei_contig6335.8.1 vs. uniprot
Match: A0A1Z5KWI8_ORNMO (Uncharacterized protein ycf68 (Fragment) n=1 Tax=Ornithodoros moubata TaxID=6938 RepID=A0A1Z5KWI8_ORNMO)

HSP 1 Score: 90.9 bits (224), Expect = 4.570e-22
Identity = 52/87 (59.77%), Postives = 56/87 (64.37%), Query Frame = 1
Query:    1 FNSSRREEPYQGLTWDCRAGK--PVGLRGCPTGAAWLSSARVVRCWVKSRNERNPCGQLSF-----SGQTAGSKPEEGGDDVKSAWP 240
            FNS +R EPYQ LT   R  +       G  TGAAWLSSARVVRCWVKSRNERNPC  L       S +TAG   EEGGDDVKS+ P
Sbjct:    3 FNSKQRAEPYQPLTSRSRFPEMDSFSSAGPVTGAAWLSSARVVRCWVKSRNERNPCSLLPARYGGDSVETAGVNSEEGGDDVKSSCP 89          
BLAST of mRNA_P-wetherbeei_contig6335.8.1 vs. uniprot
Match: A0A5J4KHE1_9CHLR (Uncharacterized protein n=1 Tax=Thermogemmatispora aurantia TaxID=2045279 RepID=A0A5J4KHE1_9CHLR)

HSP 1 Score: 84.0 bits (206), Expect = 9.200e-20
Identity = 42/61 (68.85%), Postives = 44/61 (72.13%), Query Frame = 1
Query:   58 GKPVGLRGCPTGAAWLSSARVVRCWVKSRNERNPCGQLSFSGQTAGSKPEEGGDDVKSAWP 240
            G+P   R   TGAAWLSSAR VRCWVKSRNERNP  +L  S  TA    EEGGDDVKSAWP
Sbjct:    9 GRPA--REACTGAAWLSSARAVRCWVKSRNERNPRSRLEISEGTAAHNAEEGGDDVKSAWP 67          
BLAST of mRNA_P-wetherbeei_contig6335.8.1 vs. uniprot
Match: A0A7S2JKY0_9EUKA (Uncharacterized protein ycf68 (Fragment) n=2 Tax=Cyanoptyche gloeocystis TaxID=77922 RepID=A0A7S2JKY0_9EUKA)

HSP 1 Score: 86.3 bits (212), Expect = 1.740e-19
Identity = 41/56 (73.21%), Postives = 43/56 (76.79%), Query Frame = 1
Query:   88 TGAAWLSSARVVRCWVKSRNERNP-----CGQLSFSGQTAGSKPEEGGDDVKSAWP 240
            TG AWLSSARVVRCWVKSRNERNP      G     G+TAG KPEEGGDDVKS+WP
Sbjct:   19 TGGAWLSSARVVRCWVKSRNERNPRLQLPSGNAGHFGETAGDKPEEGGDDVKSSWP 74          
BLAST of mRNA_P-wetherbeei_contig6335.8.1 vs. uniprot
Match: UPI0019B69310 (Uncharacterized protein n=1 Tax=Saccharospirillum salsuginis TaxID=418750 RepID=UPI0019B69310)

HSP 1 Score: 83.6 bits (205), Expect = 1.890e-19
Identity = 41/56 (73.21%), Postives = 44/56 (78.57%), Query Frame = 1
Query:   88 TGAAWLSSARVVRCWVKSRNERNPCGQLSFSG-----QTAGSKPEEGGDDVKSAWP 240
            TGAAWLSSARVV+CWVKSRNERNP   L  S      +TAG KPEEGGDDVKS+WP
Sbjct:    2 TGAAWLSSARVVKCWVKSRNERNPYPYLPASDVGDYKETAGDKPEEGGDDVKSSWP 57          
BLAST of mRNA_P-wetherbeei_contig6335.8.1 vs. uniprot
Match: A0A3S5APK9_9PLAT (Uncharacterized protein ycf68 n=1 Tax=Protopolystoma xenopodis TaxID=117903 RepID=A0A3S5APK9_9PLAT)

HSP 1 Score: 84.3 bits (207), Expect = 5.240e-19
Identity = 46/82 (56.10%), Postives = 49/82 (59.76%), Query Frame = 1
Query:    1 FNSSRREEPYQGLTWDCRAGK--PVGLRGCPTGAAWLSSARVVRCWVKSRNERNPCGQLSFSGQTAGSKPEEGGDDVKSAWP 240
            FNS  RE+PYQ LTW  R  +  P    G  TG AWLSSARVVRCWVKSRNERNP   L             G DDVKS+WP
Sbjct:    3 FNSMLREKPYQPLTWWSREAEMHPFSSAGPHTGVAWLSSARVVRCWVKSRNERNPHSYLPA-----------GEDDVKSSWP 73          
BLAST of mRNA_P-wetherbeei_contig6335.8.1 vs. uniprot
Match: A0A0V0H990_SOLCH (Uncharacterized protein ycf68 (Fragment) n=1 Tax=Solanum chacoense TaxID=4108 RepID=A0A0V0H990_SOLCH)

HSP 1 Score: 80.9 bits (198), Expect = 1.290e-17
Identity = 44/67 (65.67%), Postives = 48/67 (71.64%), Query Frame = 1
Query:   52 RAGKPVGLRGCPTGAAWLSSARVVRCWVKSRNERNP---CGQ-LSFSGQTAGSKPEEGGDDVKSAWP 240
            R+G  +G     TG AWLSSARVVRCWVKSRNERNP   C   +  S +TAG KPEEGGDDVKSA P
Sbjct:    7 RSGSALG--SAETGGAWLSSARVVRCWVKSRNERNPVLSCQHXVGHSRETAGDKPEEGGDDVKSACP 71          
BLAST of mRNA_P-wetherbeei_contig6335.8.1 vs. uniprot
Match: A0A8J2K919_9HEXA (Hypothetical protein n=1 Tax=Allacma fusca TaxID=39272 RepID=A0A8J2K919_9HEXA)

HSP 1 Score: 79.3 bits (194), Expect = 3.320e-17
Identity = 39/56 (69.64%), Postives = 42/56 (75.00%), Query Frame = 1
Query:   88 TGAAWLSSARVVRCWVKSRNERNP-----CGQLSFSGQTAGSKPEEGGDDVKSAWP 240
            TGAAWLSSARVV+CWVKSRNERNP      G    S +TA  K EEGGDDVKS+WP
Sbjct:   51 TGAAWLSSARVVKCWVKSRNERNPYPLLPAGNAGNSKETASDKLEEGGDDVKSSWP 106          
BLAST of mRNA_P-wetherbeei_contig6335.8.1 vs. uniprot
Match: A8S6F0_9FIRM (Uncharacterized protein n=2 Tax=Faecalibacterium prausnitzii M21/2 TaxID=411485 RepID=A8S6F0_9FIRM)

HSP 1 Score: 79.7 bits (195), Expect = 5.050e-17
Identity = 41/58 (70.69%), Postives = 45/58 (77.59%), Query Frame = 1
Query:    1 FNSSRREEPYQGLTWDCRAGKPVG-LRGCPTGAAWLSSARVVRCWVKSRNERNPCGQL 171
            FNS++REEPYQ LT  C A + +  LR   TG AWLSSARVVRCWVKSRNERNP GQL
Sbjct:    3 FNSTQREEPYQVLT-SCDAHRNMCFLRDAETGGAWLSSARVVRCWVKSRNERNPYGQL 59          
BLAST of mRNA_P-wetherbeei_contig6335.8.1 vs. uniprot
Match: L7W0Q1_9BACT (Uncharacterized protein n=1 Tax=uncultured bacterium A1Q1_fos_291 TaxID=1256570 RepID=L7W0Q1_9BACT)

HSP 1 Score: 75.1 bits (183), Expect = 2.400e-16
Identity = 37/55 (67.27%), Postives = 41/55 (74.55%), Query Frame = 1
Query:    1 FNSSRREEPYQGLTWDCRA--GKPVGLRGCPTGAAWLSSARVVRCWVKSRNERNP 159
            FNS +REEPY GLT  C+A    P+  +   TG AWLSSARVVRCWVKSRNERNP
Sbjct:    3 FNSKQREEPYLGLTSLCKALNRAPLVRKTKVTGGAWLSSARVVRCWVKSRNERNP 57          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6335.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6A5KX99_LUPAL4.350e-2667.47Uncharacterized protein ycf68 n=2 Tax=Lupinus albu... [more]
A0A1Z5KWI8_ORNMO4.570e-2259.77Uncharacterized protein ycf68 (Fragment) n=1 Tax=O... [more]
A0A5J4KHE1_9CHLR9.200e-2068.85Uncharacterized protein n=1 Tax=Thermogemmatispora... [more]
A0A7S2JKY0_9EUKA1.740e-1973.21Uncharacterized protein ycf68 (Fragment) n=2 Tax=C... [more]
UPI0019B693101.890e-1973.21Uncharacterized protein n=1 Tax=Saccharospirillum ... [more]
A0A3S5APK9_9PLAT5.240e-1956.10Uncharacterized protein ycf68 n=1 Tax=Protopolysto... [more]
A0A0V0H990_SOLCH1.290e-1765.67Uncharacterized protein ycf68 (Fragment) n=1 Tax=S... [more]
A0A8J2K919_9HEXA3.320e-1769.64Hypothetical protein n=1 Tax=Allacma fusca TaxID=3... [more]
A8S6F0_9FIRM5.050e-1770.69Uncharacterized protein n=2 Tax=Faecalibacterium p... [more]
L7W0Q1_9BACT2.400e-1667.27Uncharacterized protein n=1 Tax=uncultured bacteri... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6335contigP-wetherbeei_contig6335:2801..3040 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1304875.JAFZ01000002_gene1
Model size240
Max annot lvl2|Bacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.57e-21
EggNOG OGs2DMHR@1|root,32RMI@2|Bacteria
Cds size240
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186905.7123234-CDS-P-wetherbeei_contig6335:2800..30401683186905.7123234-CDS-P-wetherbeei_contig6335:2800..3040Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6335 2801..3040 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6335.8.1prot_P-wetherbeei_contig6335.8.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6335 2801..3040 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6335.8.1

>prot_P-wetherbeei_contig6335.8.1 ID=prot_P-wetherbeei_contig6335.8.1|Name=mRNA_P-wetherbeei_contig6335.8.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=80bp
FNSSRREEPYQGLTWDCRAGKPVGLRGCPTGAAWLSSARVVRCWVKSRNE
RNPCGQLSFSGQTAGSKPEEGGDDVKSAWP
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mRNA from alignment at P-wetherbeei_contig6335:2801..3040-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6335.8.1 ID=mRNA_P-wetherbeei_contig6335.8.1|Name=mRNA_P-wetherbeei_contig6335.8.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=240bp|location=Sequence derived from alignment at P-wetherbeei_contig6335:2801..3040- (Phaeothamnion wetherbeei SAG_119_79)
TTTAATTCGTCGCGACGCGAAGAACCTTACCAAGGCTTGACATGGGACTG CAGAGCCGGGAAACCGGTTGGCCTTCGAGGGTGTCCCACCGGTGCTGCAT GGCTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAG CGCAACCCCTGTGGTCAGTTGAGTTTTTCTGGCCAGACTGCCGGGAGCAA ACCGGAGGAAGGTGGGGATGACGTCAAGTCCGCATGGCCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6335:2801..3040-

>mRNA_P-wetherbeei_contig6335.8.1 ID=mRNA_P-wetherbeei_contig6335.8.1|Name=mRNA_P-wetherbeei_contig6335.8.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=240bp|location=Sequence derived from alignment at P-wetherbeei_contig6335:2801..3040- (Phaeothamnion wetherbeei SAG_119_79)
TTTAATTCGTCGCGACGCGAAGAACCTTACCAAGGCTTGACATGGGACTG
CAGAGCCGGGAAACCGGTTGGCCTTCGAGGGTGTCCCACCGGTGCTGCAT
GGCTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAG
CGCAACCCCTGTGGTCAGTTGAGTTTTTCTGGCCAGACTGCCGGGAGCAA
ACCGGAGGAAGGTGGGGATGACGTCAAGTCCGCATGGCCC
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