mRNA_P-wetherbeei_contig6335.5.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6335.5.1
Unique NamemRNA_P-wetherbeei_contig6335.5.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6335.5.1 vs. uniprot
Match: H6SIC8_PARPM (Uncharacterized protein (Fragment) n=1 Tax=Pararhodospirillum photometricum DSM 122 TaxID=1150469 RepID=H6SIC8_PARPM)

HSP 1 Score: 61.6 bits (148), Expect = 1.080e-10
Identity = 33/51 (64.71%), Postives = 35/51 (68.63%), Query Frame = 3
Query:   45 RLSLATSTYSLAHSTKGTPSLTRELRPAGRIGFQDLFHSPRRGAFHHSLTV 197
            RL LA    SL H TKGTPS  +ELR    I FQ+LFHSP RGAFH SLTV
Sbjct:   54 RLKLARQIKSLTHYTKGTPSPPKELRLLVGIRFQELFHSPHRGAFHLSLTV 104          
BLAST of mRNA_P-wetherbeei_contig6335.5.1 vs. uniprot
Match: H6SIC1_PARPM (Uncharacterized protein (Fragment) n=1 Tax=Pararhodospirillum photometricum DSM 122 TaxID=1150469 RepID=H6SIC1_PARPM)

HSP 1 Score: 58.5 bits (140), Expect = 1.360e-9
Identity = 26/42 (61.90%), Postives = 30/42 (71.43%), Query Frame = 2
Query:   71 LVGSFYKRHAVTHS*APTGRTHRVSGSLSLPSPGCFSPFPHG 196
            +    YKR+AVT   APT   H VSG++SLPS GCFSPFPHG
Sbjct:    1 VADPLYKRYAVTPEGAPTACRHPVSGTVSLPSSGCFSPFPHG 42          
BLAST of mRNA_P-wetherbeei_contig6335.5.1 vs. uniprot
Match: A0A6A5L4G5_LUPAL (Uncharacterized protein n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5L4G5_LUPAL)

HSP 1 Score: 52.0 bits (123), Expect = 4.060e-6
Identity = 29/64 (45.31%), Postives = 33/64 (51.56%), Query Frame = 2
Query:    5 PFQTRFRSGSGCTPP*PRHVHLLVGSFYKRHAVTHS*APTGRTHRVSGSLSLPSPGCFSPFPHG 196
            P QTRFR  S        +   L   + K     H  APT   H VSG++SLP  GCFSPFPHG
Sbjct:    6 PIQTRFRCASTYRLKLAAYSKSLT-HYTKGTPSPHEEAPTACRHPVSGTVSLPLSGCFSPFPHG 68          
BLAST of mRNA_P-wetherbeei_contig6335.5.1 vs. uniprot
Match: A0A6A5L866_LUPAL (Uncharacterized protein n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5L866_LUPAL)

HSP 1 Score: 52.0 bits (123), Expect = 4.120e-6
Identity = 29/64 (45.31%), Postives = 33/64 (51.56%), Query Frame = 2
Query:    5 PFQTRFRSGSGCTPP*PRHVHLLVGSFYKRHAVTHS*APTGRTHRVSGSLSLPSPGCFSPFPHG 196
            P QTRFR  S        +   L   + K     H  APT   H VSG++SLP  GCFSPFPHG
Sbjct:    6 PIQTRFRCASTYRLKLAAYSKSLT-HYTKGTPSPHEEAPTACRHPVSGTVSLPLSGCFSPFPHG 68          
BLAST of mRNA_P-wetherbeei_contig6335.5.1 vs. uniprot
Match: A0A6A5L6S4_LUPAL (Uncharacterized protein n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5L6S4_LUPAL)

HSP 1 Score: 52.0 bits (123), Expect = 4.130e-6
Identity = 29/64 (45.31%), Postives = 33/64 (51.56%), Query Frame = 2
Query:    5 PFQTRFRSGSGCTPP*PRHVHLLVGSFYKRHAVTHS*APTGRTHRVSGSLSLPSPGCFSPFPHG 196
            P QTRFR  S        +   L   + K     H  APT   H VSG++SLP  GCFSPFPHG
Sbjct:    6 PIQTRFRCASTYRLKLAAYSKSLT-HYTKGTPSPHEEAPTACRHPVSGTVSLPLSGCFSPFPHG 68          
BLAST of mRNA_P-wetherbeei_contig6335.5.1 vs. uniprot
Match: B2PX01_PROST (Uncharacterized protein n=2 Tax=Providencia TaxID=586 RepID=B2PX01_PROST)

HSP 1 Score: 48.1 bits (113), Expect = 1.280e-5
Identity = 21/27 (77.78%), Postives = 23/27 (85.19%), Query Frame = 2
Query:  116 APTGRTHRVSGSLSLPSPGCFSPFPHG 196
            APT  T+ VSGS+SLPSPG FSPFPHG
Sbjct:   11 APTACTYTVSGSISLPSPGFFSPFPHG 37          
BLAST of mRNA_P-wetherbeei_contig6335.5.1 vs. uniprot
Match: D1CZ21_9HYPH (Uncharacterized protein (Fragment) n=7 Tax=Brucella TaxID=234 RepID=D1CZ21_9HYPH)

HSP 1 Score: 48.9 bits (115), Expect = 1.450e-5
Identity = 25/44 (56.82%), Postives = 29/44 (65.91%), Query Frame = 2
Query:   71 LVGSFYKRHAVTHS*--APTGRTHRVSGSLSLPSPGCFSPFPHG 196
            +    YKR+AVT     APT   H VSG++SLPS G FSPFPHG
Sbjct:    1 VADPLYKRYAVTQDKPWAPTVCRHPVSGTVSLPSSGYFSPFPHG 44          
BLAST of mRNA_P-wetherbeei_contig6335.5.1 vs. uniprot
Match: UPI001A08AA19 (Uncharacterized protein n=1 Tax=Pseudorhizobium halotolerans TaxID=1233081 RepID=UPI001A08AA19)

HSP 1 Score: 49.3 bits (116), Expect = 2.980e-5
Identity = 29/64 (45.31%), Postives = 33/64 (51.56%), Query Frame = 2
Query:    5 PFQTRFRSGSGCTPP*PRHVHLLVGSFYKRHAVTHS*APTGRTHRVSGSLSLPSPGCFSPFPHG 196
            P QTRFR           +   L    Y +   +   APT   H VSGS+SLPS GCFSPFPHG
Sbjct:   33 PVQTRFRYAYTYRLKLACYTKSLT--HYTKGTPSPLRAPTVCRHPVSGSISLPSSGCFSPFPHG 94          
BLAST of mRNA_P-wetherbeei_contig6335.5.1 vs. uniprot
Match: A0A379GAU9_PROMI (Uncharacterized protein n=1 Tax=Proteus mirabilis TaxID=584 RepID=A0A379GAU9_PROMI)

HSP 1 Score: 47.8 bits (112), Expect = 4.370e-5
Identity = 24/42 (57.14%), Postives = 27/42 (64.29%), Query Frame = 2
Query:   71 LVGSFYKRHAVTHS*APTGRTHRVSGSLSLPSPGCFSPFPHG 196
            ++ S   RH      APT  T+ VSGS SLPSPG FSPFPHG
Sbjct:   46 VLASLSARHLSDG--APTACTYTVSGSFSLPSPGFFSPFPHG 85          
BLAST of mRNA_P-wetherbeei_contig6335.5.1 vs. uniprot
Match: A0A0K2VKZ1_LEPSM (Uncharacterized protein (Fragment) n=1 Tax=Lepeophtheirus salmonis TaxID=72036 RepID=A0A0K2VKZ1_LEPSM)

HSP 1 Score: 46.6 bits (109), Expect = 5.120e-5
Identity = 28/63 (44.44%), Postives = 33/63 (52.38%), Query Frame = 2
Query:   11 QTRFRSGSGCTPP*PRHVHLLVGSFYKRHAVTH-S*APTGRTHRVSGSLSLPSPGCFSPFPHG 196
            +TRF   S      P  +  L    Y +   +H   APT   H VSGS+SLPS G FSPFPHG
Sbjct:    1 KTRFPYASPIRLSLPLRIKSLT--HYTKGTQSHLKGAPTACMHTVSGSISLPSQGFFSPFPHG 61          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6335.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
H6SIC8_PARPM1.080e-1064.71Uncharacterized protein (Fragment) n=1 Tax=Pararho... [more]
H6SIC1_PARPM1.360e-961.90Uncharacterized protein (Fragment) n=1 Tax=Pararho... [more]
A0A6A5L4G5_LUPAL4.060e-645.31Uncharacterized protein n=1 Tax=Lupinus albus TaxI... [more]
A0A6A5L866_LUPAL4.120e-645.31Uncharacterized protein n=1 Tax=Lupinus albus TaxI... [more]
A0A6A5L6S4_LUPAL4.130e-645.31Uncharacterized protein n=1 Tax=Lupinus albus TaxI... [more]
B2PX01_PROST1.280e-577.78Uncharacterized protein n=2 Tax=Providencia TaxID=... [more]
D1CZ21_9HYPH1.450e-556.82Uncharacterized protein (Fragment) n=7 Tax=Brucell... [more]
UPI001A08AA192.980e-545.31Uncharacterized protein n=1 Tax=Pseudorhizobium ha... [more]
A0A379GAU9_PROMI4.370e-557.14Uncharacterized protein n=1 Tax=Proteus mirabilis ... [more]
A0A0K2VKZ1_LEPSM5.120e-544.44Uncharacterized protein (Fragment) n=1 Tax=Lepeoph... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6335contigP-wetherbeei_contig6335:1114..1311 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog986075.CathTA2_0037
Model size198
Max annot lvl1239|Firmicutes
Hectar predicted targeting categorymitochondrion
Exons1
Evalue4.01e-06
EggNOG OGs2AHMV@1|root,317ZT@2|Bacteria,1VPFH@1239|Firmicutes
Cds size198
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186905.6497214-CDS-P-wetherbeei_contig6335:1113..13111683186905.6497214-CDS-P-wetherbeei_contig6335:1113..1311Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6335 1114..1311 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6335.5.1prot_P-wetherbeei_contig6335.5.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6335 1114..1311 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6335.5.1

>prot_P-wetherbeei_contig6335.5.1 ID=prot_P-wetherbeei_contig6335.5.1|Name=mRNA_P-wetherbeei_contig6335.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=66bp
LALSDSLSLRLRLYPALASPRPPTRWLILQKARRHSLVSSDRPDASGFRI
SFTPLAGVLFTIPSRY
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mRNA from alignment at P-wetherbeei_contig6335:1114..1311+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6335.5.1 ID=mRNA_P-wetherbeei_contig6335.5.1|Name=mRNA_P-wetherbeei_contig6335.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=198bp|location=Sequence derived from alignment at P-wetherbeei_contig6335:1114..1311+ (Phaeothamnion wetherbeei SAG_119_79)
CTCGCCCTTTCAGACTCGCTTTCGCTCCGGCTCCGGCTGTACCCCGCCTT AGCCTCGCCACGTCCACCTACTCGTTGGCTCATTCTACAAAAGGCACGCC GTCACTCACTCGTGAGCTCCGACCGGCCGGACGCATCGGGTTTCAGGATC TCTTTCACTCCCCTCGCCGGGGTGCTTTTCACCATTCCCTCACGGTAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6335:1114..1311+

>mRNA_P-wetherbeei_contig6335.5.1 ID=mRNA_P-wetherbeei_contig6335.5.1|Name=mRNA_P-wetherbeei_contig6335.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=198bp|location=Sequence derived from alignment at P-wetherbeei_contig6335:1114..1311+ (Phaeothamnion wetherbeei SAG_119_79)
CTCGCCCTTTCAGACTCGCTTTCGCTCCGGCTCCGGCTGTACCCCGCCTT
AGCCTCGCCACGTCCACCTACTCGTTGGCTCATTCTACAAAAGGCACGCC
GTCACTCACTCGTGAGCTCCGACCGGCCGGACGCATCGGGTTTCAGGATC
TCTTTCACTCCCCTCGCCGGGGTGCTTTTCACCATTCCCTCACGGTAC
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