prot_P-wetherbeei_contig6329.2.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-wetherbeei_contig6329.2.1
Unique Nameprot_P-wetherbeei_contig6329.2.1
Typepolypeptide
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length191
Homology
BLAST of mRNA_P-wetherbeei_contig6329.2.1 vs. uniprot
Match: A0A1F4A5V4_9PROT (LPS export ABC transporter periplasmic protein LptC n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_02_64_14 TaxID=1797482 RepID=A0A1F4A5V4_9PROT)

HSP 1 Score: 223 bits (567), Expect = 5.300e-71
Identity = 107/186 (57.53%), Postives = 140/186 (75.27%), Query Frame = 0
Query:    1 MMQRLTAWFPVLLLAAVAAVTVWLDRQVQPPEAGVSGKGRHDPDYIVDNFAVTRIGPDGIVRYKLNARRMLHYPDDDTTDLVTPRFVNFHGPGVTVTASSKTATLSSNGENAYLKDDVRLTRSAYENRGELTVRTSWLHVIPDDGIAKTDKPVRIQDANTLITSDGLEFNNETRILKLLSNVRGRY 186
            M +RLTAWFP+ LLA +AA+TVWLDR VQPP  G     RHDPDY VD  +V R+ PDG +++ L A RM+HYPDDDTT + TPRFV++      VT +++ A +SS GEN Y +DDVR+TR+A+ +R EL V+TS+LHV+PD+ IA+TD+ V I DANT + + GLE N+ETR+LKLLS+VRG Y
Sbjct:    1 MQERLTAWFPLFLLATLAALTVWLDRVVQPPPPGRPAIARHDPDYFVDGLSVMRMAPDGSIKHTLAAHRMVHYPDDDTTHIETPRFVSYATRRAPVTITARGALVSSEGENIYFQDDVRVTRAAFADRSELVVQTSYLHVVPDESIARTDRAVTITDANTTVRAVGLELNSETRVLKLLSSVRGIY 186          
BLAST of mRNA_P-wetherbeei_contig6329.2.1 vs. uniprot
Match: A0A1F4DK90_9PROT (LPS export ABC transporter periplasmic protein LptC n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_13 TaxID=1797495 RepID=A0A1F4DK90_9PROT)

HSP 1 Score: 220 bits (560), Expect = 5.210e-70
Identity = 105/186 (56.45%), Postives = 140/186 (75.27%), Query Frame = 0
Query:    1 MMQRLTAWFPVLLLAAVAAVTVWLDRQVQPPEAGVSGKGRHDPDYIVDNFAVTRIGPDGIVRYKLNARRMLHYPDDDTTDLVTPRFVNFHGPGVTVTASSKTATLSSNGENAYLKDDVRLTRSAYENRGELTVRTSWLHVIPDDGIAKTDKPVRIQDANTLITSDGLEFNNETRILKLLSNVRGRY 186
            M +RLTAWFP+LLL+A+AA+T WLDR VQPP +   G  RHDPDYIVD  +  R+  DG +++ L A +M+HYPDDD+T L +PR+V++      VT +++ A +SS GEN Y +DDV + R+ Y N+ ELT+RTS+LHVIPDD IA+TD+ V I DANT++T+ GLE NNETR+LKLLS V+G Y
Sbjct:    1 MNERLTAWFPLLLLSALAALTFWLDRFVQPPASTRGGVARHDPDYIVDGLSAVRMAADGAIKHTLFAEKMVHYPDDDSTRLDSPRYVSYAAAQAPVTITAREALVSSEGENIYFRDDVLVKRAPYANKSELTMRTSYLHVIPDDNIARTDRAVTITDANTVVTAVGLELNNETRVLKLLSRVKGTY 186          
BLAST of mRNA_P-wetherbeei_contig6329.2.1 vs. uniprot
Match: A0A1F4DU49_9PROT (LPS export ABC transporter periplasmic protein LptC n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_58 TaxID=1797497 RepID=A0A1F4DU49_9PROT)

HSP 1 Score: 208 bits (530), Expect = 1.930e-65
Identity = 99/186 (53.23%), Postives = 134/186 (72.04%), Query Frame = 0
Query:    1 MMQRLTAWFPVLLLAAVAAVTVWLDRQVQPPEAGVSGKGRHDPDYIVDNFAVTRIGPDGIVRYKLNARRMLHYPDDDTTDLVTPRFVNFHGPGVTVTASSKTATLSSNGENAYLKDDVRLTRSAYENRGELTVRTSWLHVIPDDGIAKTDKPVRIQDANTLITSDGLEFNNETRILKLLSNVRGRY 186
            M +RLTAWFP+LLL  +A +T WLDR VQP  +     GRHDPDY VD  +  R+GPDG +++ L+A  M+HYPDDD+T L +PRFVN       VT ++K A LSS GEN Y  +DVR+TR+ Y ++  L +RTS+LHVIPDD +A+TD+ V I D NT++ + GLE+N+ETR+L+L S+V+G Y
Sbjct:    1 MNERLTAWFPLLLLTVLAGLTFWLDRFVQPTVSTRGAAGRHDPDYFVDGLSAVRMGPDGKIKHTLSADEMVHYPDDDSTHLRSPRFVNHAAAQAPVTITAKDALLSSEGENIYFHNDVRVTRARYADKSMLEMRTSYLHVIPDDNVARTDRAVTITDGNTIVNAVGLEWNSETRVLRLFSSVKGTY 186          
BLAST of mRNA_P-wetherbeei_contig6329.2.1 vs. uniprot
Match: A0A7C2UNT3_9PROT (LPS export ABC transporter periplasmic protein LptC n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A7C2UNT3_9PROT)

HSP 1 Score: 207 bits (526), Expect = 7.580e-65
Identity = 104/186 (55.91%), Postives = 128/186 (68.82%), Query Frame = 0
Query:    1 MMQRLTAWFPVLLLAAVAAVTVWLDRQVQPPEAGVSGKGRHDPDYIVDNFAVTRIGPDGIVRYKLNARRMLHYPDDDTTDLVTPRFVNFHGPGVTVTASSKTATLSSNGENAYLKDDVRLTRSAYENRGELTVRTSWLHVIPDDGIAKTDKPVRIQDANTLITSDGLEFNNETRILKLLSNVRGRY 186
            M  RLTAWFP+LLLAA+AA+T WLD  V+PP A  S   RHDPDYIVD  +  RI   G V+Y L A RM+HYPDDDTT L  PR V++      VT +S+   +SS GEN Y +DDV +TR+ Y  R EL VRT +LHVIPD  IA+ ++PV I DANT + + GLE N ET++L+LLS VRG Y
Sbjct:    1 MNDRLTAWFPLLLLAALAALTFWLDSFVRPPPAAGSAAARHDPDYIVDGLSAVRIDEKGSVKYALTAERMVHYPDDDTTHLRRPRLVSYATAQAPVTITSREGLVSSEGENVYFRDDVVVTRAPYARRSELVVRTDYLHVIPDSHIARIERPVTITDANTTVHAVGLELNTETQVLRLLSRVRGTY 186          
BLAST of mRNA_P-wetherbeei_contig6329.2.1 vs. uniprot
Match: A0A7C3JQ17_9PROT (LPS export ABC transporter periplasmic protein LptC n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A7C3JQ17_9PROT)

HSP 1 Score: 199 bits (506), Expect = 7.970e-62
Identity = 97/190 (51.05%), Postives = 134/190 (70.53%), Query Frame = 0
Query:    1 MMQRLTAWFPVLLLAAVAAVTVWLDRQVQPPEAGVSGKGRHDPDYIVDNFAVTRIGPDGIVRYKLNARRMLHYPDDDTTDLVTPRFVNFHGPGVTVTASSKTATLSSNGENAYLKDDVRLTRSAYENRGELTVRTSWLHVIPDDGIAKTDKPVRIQDANTLITSDGLEFNNETRILKLLSNVRGRYEKNK 190
            M +R TAW P+ L+  +AA+T WLDR VQPP    +G  RHDPDYIVDN +  RIGP G  RY L+A   +HYPDDDTT L  PRFV++      VT ++    +S+ G++ Y +DDVR+TR+   ++GEL +RT++LHVIPD  +A+TD+ V I DA T++T+ GLE N+ET +++LLSNVRG Y+ +K
Sbjct:    1 MAERPTAWLPIALIGLLAALTFWLDRVVQPP-GSAAGASRHDPDYIVDNLSAVRIGPAGRERYTLSASTTVHYPDDDTTLLTRPRFVSYGSEKAPVTITANQGVVSAKGDHVYFQDDVRVTRAPRGDQGELVMRTAFLHVIPDQNLARTDRAVTITDAATVVTAVGLELNSETHVVRLLSNVRGIYDPSK 189          
BLAST of mRNA_P-wetherbeei_contig6329.2.1 vs. uniprot
Match: UPI0019BF8CBA (LPS export ABC transporter periplasmic protein LptC n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=UPI0019BF8CBA)

HSP 1 Score: 198 bits (504), Expect = 1.130e-61
Identity = 96/183 (52.46%), Postives = 128/183 (69.95%), Query Frame = 0
Query:    5 LTAWFPVLLLAAVAAVTVWLDRQVQPPEAGVSGKGRHDPDYIVDNFAVTRIGPDGIVRYKLNARRMLHYPDDDTTDLVTPRFVNFHGPGVTVTASSKTATLSSNGENAYLKDDVRLTRSAYENRGELTVRTSWLHVIPDDGIAKTDKPVRIQDANTLITSDGLEFNNETRILKLLSNVRGRYE 187
            +++WFP+ LL A+AA+  WL+  VQPP  G +GK RHDPDYI++NF+  R+G DG   YKL A +++HYPDDDT+ L  P  V++      +  +S+TA ++S+GENAY  DDVR+ R  + +  +L + T +LHVIPD   AKTDKPV I DANT I + GLEF+NE R LKLLS V GRYE
Sbjct:    1 MSSWFPLALLIALAAIAFWLEYTVQPPITGGNGKLRHDPDYIIENFSALRMGEDGHPLYKLAADKLIHYPDDDTSHLQEPNLVHYDPETAPLRITSETALVTSDGENAYFSDDVRVIREPFADNSKLVITTDYLHVIPDKNFAKTDKPVTIIDANTTIKAVGLEFDNEARTLKLLSRVNGRYE 183          
BLAST of mRNA_P-wetherbeei_contig6329.2.1 vs. uniprot
Match: A0A1F4BN01_9PROT (LPS export ABC transporter periplasmic protein LptC n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_02_FULL_67_26 TaxID=1797492 RepID=A0A1F4BN01_9PROT)

HSP 1 Score: 199 bits (505), Expect = 1.170e-61
Identity = 99/185 (53.51%), Postives = 130/185 (70.27%), Query Frame = 0
Query:    3 QRLTAWFPVLLLAAVAAVTVWLDRQVQPPEAGVSGKGRHDPDYIVDNFAVTRIGPDGIVRYKLNARRMLHYPDDDTTDLVTPRFVNFHGPGVTVTASSKTATLSSNGENAYLKDDVRLTRSAYENRGELTVRTSWLHVIPDDGIAKTDKPVRIQDANTLITSDGLEFNNETRILKLLSNVRGRYE 187
             RLT   P+LL+  +AA+T WLDR  QPP  G+ G  RHDPDYIVDN +  R+G  G   Y L+A +M HYPDDDTT L  P+FV++     +VT ++  A +S+NGE+ Y +DDVR+TR+A     EL VRT++LHVIPD  +A+TD+ V I DA T +T+ GLE N+ETR++KLLSNVRG YE
Sbjct:    4 DRLTVAAPLLLVGILAALTFWLDRVAQPPARGLGGS-RHDPDYIVDNLSAVRMGETGAASYTLSAVKMRHYPDDDTTVLANPKFVSYRSAKASVTITASQAVVSANGEHVYFQDDVRVTRAADRETSELVVRTAFLHVIPDLNLAQTDRTVTITDAATTVTAMGLELNSETRVIKLLSNVRGAYE 187          
BLAST of mRNA_P-wetherbeei_contig6329.2.1 vs. uniprot
Match: A0A7X1P7Q3_9PROT (LPS export ABC transporter periplasmic protein LptC n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A7X1P7Q3_9PROT)

HSP 1 Score: 191 bits (484), Expect = 1.340e-58
Identity = 95/189 (50.26%), Postives = 125/189 (66.14%), Query Frame = 0
Query:    2 MQRLTAWFPVLLLAAVAAVTVWLDRQVQPPEAGVSGKGRHDPDYIVDNFAVTRIGPDGIVRYKLNARRMLHYPDDDTTDLVTPRFVNFHGPGVTVTASSKTATLSSNGENAYLKDDVRLTRSAYENRGELTVRTSWLHVIPDDGIAKTDKPVRIQDANTLITSDGLEFNNETRILKLLSNVRGRYEKNK 190
            M R TA FP+LL+  +AA+T WL+R VQ P     G  RHDPDY+V+NF   R+GPDG+  ++L A RMLHYPDDD+T L  PR + +    V ++ +SK A +SS GE     DDVR  RSA   + E+ + T  LHV+PDD  A+T  PV I DANT +T+ GLE NN+ +++KLLSNVRG Y + K
Sbjct:    1 MDRFTAAFPLLLVTVLAALTFWLERLVQAPAPPSDGSTRHDPDYMVENFVAIRMGPDGLRLHQLEADRMLHYPDDDSTHLEAPRLLKYENEKVALSITSKRARVSSEGETVEFHDDVRAVRSATPTQSEMVLTTDHLHVVPDDDYARTASPVTIVDANTKVTAVGLELNNKAKVVKLLSNVRGSYVQKK 189          
BLAST of mRNA_P-wetherbeei_contig6329.2.1 vs. uniprot
Match: A0A3N5X3B0_9PROT (LPS export ABC transporter periplasmic protein LptC n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A3N5X3B0_9PROT)

HSP 1 Score: 179 bits (455), Expect = 3.920e-54
Identity = 88/185 (47.57%), Postives = 127/185 (68.65%), Query Frame = 0
Query:    2 MQRLTAWFPVLLLAAVAAVTVWLDRQVQPPEAGVSGKGRHDPDYIVDNFAVTRIGPDGIVRYKLNARRMLHYPDDDTTDLVTPRFVNFHGPGVTVTASSKTATLSSNGENAYLKDDVRLTRSAYENRGELTVRTSWLHVIPDDGIAKTDKPVRIQDANTLITSDGLEFNNETRILKLLSNVRGRY 186
            M R +  FP+LLLAA+A++T+WLD+ VQ  E     + RHDPDYI++N    R+  +G V++ L+A RM HYPDDDTT L++PRF +       +T +S+TA +SS G++ Y + DVR  R AY +  E+ + TS+LHV PD+ IA+TD+PV + DA+T+  + GLE N+ETRI+K LS  +G Y
Sbjct:    1 MTRFSQLFPLLLLAALASLTLWLDQAVQRDERKPEAE-RHDPDYIIENIVARRMDANGDVKHTLHAERMTHYPDDDTTHLLSPRFTSSASGQAPMTITSRTARISSGGDDVYFETDVRAVRGAYRDHSEMVMETSFLHVTPDENIARTDRPVTVTDAHTVAHAIGLELNSETRIVKFLSQFKGTY 184          
BLAST of mRNA_P-wetherbeei_contig6329.2.1 vs. uniprot
Match: UPI001BC31AFE (LPS export ABC transporter periplasmic protein LptC n=1 Tax=Sulfuricella sp. TaxID=2099377 RepID=UPI001BC31AFE)

HSP 1 Score: 176 bits (447), Expect = 5.640e-53
Identity = 87/190 (45.79%), Postives = 122/190 (64.21%), Query Frame = 0
Query:    1 MMQRLTAWFPVLLLAAVAAVTVWLDRQVQPPEAGVSGKGRHDPDYIVDNFAVTRIGPDGIVRYKLNARRMLHYPDDDTTDLVTPRFVNFHGPGVTVTASSKTATLSSNGENAYLKDDVRLTRSAYENRGELTVRTSWLHVIPDDGIAKTDKPVRIQDANTLITSDGLEFNNETRILKLLSNVRGRYEKNK 190
            M  RL+ WFPV L+  +A +T WLDR VQPP A   G  RHDPDY V+NF  TR+GPDG  +Y L   +M H+PDDD+T LV P    +      +   S+   +S +GE+A+   DV++ R A   + ELT+ T WLHVIPD   A+T++ V +++A T I + G+EFN++TRI+K LS V+G++ K K
Sbjct:    1 MKDRLSVWFPVGLVFLLALLTFWLDRMVQPPGAQKDGSQRHDPDYWVENFTATRMGPDGTPQYVLVGGKMTHFPDDDSTHLVRPHLTRYAKDLPPMHIDSQIGQVSKDGEHAWFSGDVKVVREAGRGQSELTMATPWLHVIPDQDFAETNREVTVRNAGTRIAAVGMEFNSKTRIIKFLSRVKGQHVKTK 190          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6329.2.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1F4A5V4_9PROT5.300e-7157.53LPS export ABC transporter periplasmic protein Lpt... [more]
A0A1F4DK90_9PROT5.210e-7056.45LPS export ABC transporter periplasmic protein Lpt... [more]
A0A1F4DU49_9PROT1.930e-6553.23LPS export ABC transporter periplasmic protein Lpt... [more]
A0A7C2UNT3_9PROT7.580e-6555.91LPS export ABC transporter periplasmic protein Lpt... [more]
A0A7C3JQ17_9PROT7.970e-6251.05LPS export ABC transporter periplasmic protein Lpt... [more]
UPI0019BF8CBA1.130e-6152.46LPS export ABC transporter periplasmic protein Lpt... [more]
A0A1F4BN01_9PROT1.170e-6153.51LPS export ABC transporter periplasmic protein Lpt... [more]
A0A7X1P7Q3_9PROT1.340e-5850.26LPS export ABC transporter periplasmic protein Lpt... [more]
A0A3N5X3B0_9PROT3.920e-5447.57LPS export ABC transporter periplasmic protein Lpt... [more]
UPI001BC31AFE5.640e-5345.79LPS export ABC transporter periplasmic protein Lpt... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.60.450.10Lipopolysaccharide (LPS) transport protein A like domaincoord: 62..190
e-value: 5.0E-30
score: 106.0
NoneNo IPR availablePANTHERPTHR37481LIPOPOLYSACCHARIDE EXPORT SYSTEM PROTEIN LPTCcoord: 1..189
IPR010664Lipopolysaccharide assembly, LptC-relatedPFAMPF06835LptCcoord: 12..187
e-value: 2.2E-40
score: 138.1
IPR026265Lipopolysaccharide export system protein LptCTIGRFAMTIGR04409TIGR04409coord: 8..186
e-value: 2.4E-47
score: 158.8

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6329contigP-wetherbeei_contig6329:1272..1844 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6329.2.1mRNA_P-wetherbeei_contig6329.2.1Phaeothamnion wetherbeei SAG_119_79mRNAP-wetherbeei_contig6329 1272..2365 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-wetherbeei_contig6329.2.1 ID=prot_P-wetherbeei_contig6329.2.1|Name=mRNA_P-wetherbeei_contig6329.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=191bp
MMQRLTAWFPVLLLAAVAAVTVWLDRQVQPPEAGVSGKGRHDPDYIVDNF
AVTRIGPDGIVRYKLNARRMLHYPDDDTTDLVTPRFVNFHGPGVTVTASS
KTATLSSNGENAYLKDDVRLTRSAYENRGELTVRTSWLHVIPDDGIAKTD
KPVRIQDANTLITSDGLEFNNETRILKLLSNVRGRYEKNK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR010664LipoPS_assembly_LptC-rel
IPR026265LptC