mRNA_P-wetherbeei_contig6319.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6319.4.1
Unique NamemRNA_P-wetherbeei_contig6319.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig6319.4.1 vs. uniprot
Match: A0A836CA01_9STRA (Tudor domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA01_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 1.380e-12
Identity = 30/45 (66.67%), Postives = 35/45 (77.78%), Query Frame = 1 
Query:    1 PLYKTLKVGDSVEAQYTADDVWYPAEILQAIHSGYPVAKYKVCYT 135
            PLY  LK+GD+VEAQYT DD WY A++LQ IHSGY + K KV YT
Sbjct:  568 PLYARLKLGDAVEAQYTEDDTWYAAKVLQVIHSGYSICKVKVEYT 612
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6319.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836CA01_9STRA1.380e-1266.67Tudor domain-containing protein n=1 Tax=Tribonema ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6319contigP-wetherbeei_contig6319:3170..3307 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size138
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size138
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186904.6859558-CDS-P-wetherbeei_contig6319:3169..33071683186904.6859558-CDS-P-wetherbeei_contig6319:3169..3307Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6319 3170..3307 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6319.4.1prot_P-wetherbeei_contig6319.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6319 3170..3307 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6319.4.1

>prot_P-wetherbeei_contig6319.4.1 ID=prot_P-wetherbeei_contig6319.4.1|Name=mRNA_P-wetherbeei_contig6319.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=46bp
PLYKTLKVGDSVEAQYTADDVWYPAEILQAIHSGYPVAKYKVCYTG
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mRNA from alignment at P-wetherbeei_contig6319:3170..3307+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6319.4.1 ID=mRNA_P-wetherbeei_contig6319.4.1|Name=mRNA_P-wetherbeei_contig6319.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=138bp|location=Sequence derived from alignment at P-wetherbeei_contig6319:3170..3307+ (Phaeothamnion wetherbeei SAG_119_79)
CCGCTGTACAAGACATTGAAGGTTGGCGATTCTGTGGAAGCGCAGTACAC
GGCAGATGACGTGTGGTATCCCGCCGAGATCCTGCAGGCGATCCACAGCG
GCTACCCCGTCGCCAAGTACAAGGTCTGCTATACAGGT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6319:3170..3307+

>mRNA_P-wetherbeei_contig6319.4.1 ID=mRNA_P-wetherbeei_contig6319.4.1|Name=mRNA_P-wetherbeei_contig6319.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=138bp|location=Sequence derived from alignment at P-wetherbeei_contig6319:3170..3307+ (Phaeothamnion wetherbeei SAG_119_79)
CCGCTGTACAAGACATTGAAGGTTGGCGATTCTGTGGAAGCGCAGTACAC
GGCAGATGACGTGTGGTATCCCGCCGAGATCCTGCAGGCGATCCACAGCG
GCTACCCCGTCGCCAAGTACAAGGTCTGCTATACAGGT
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