mRNA_P-wetherbeei_contig6301.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig6301.1.1 vs. uniprot
Match: D7G3R9_ECTSI (Helicase_C_4 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3R9_ECTSI) HSP 1 Score: 81.6 bits (200), Expect = 9.800e-16 Identity = 48/115 (41.74%), Postives = 69/115 (60.00%), Query Frame = 1
Query: 1 TFFEAAAVWMKGVGVDPLGIMTAKEASKILNQ-----VGRFLNRLLGIPIAAQNELFQYFIHLHEAHVKQAKRDGRYDDGIRTIQGQSVVVSAGSPLQIDRD-GVKPGDVVSHQV 327
TFFEA VW+ VG+ ++ E + ++Q V RFLNR+LG+ I Q+ LF YF + E HVK+AKRDG Y+DGIR++ G S VS L + + G+ G+V + +V
Sbjct: 18 TFFEAVLVWLGKVGI----VVEDDEVNGRIHQNVQGNVSRFLNRILGLRIVRQHVLFDYFHSVLEYHVKEAKRDGTYEDGIRSLTGASCSVSVMRALDLPEETGLAKGEVEAVKV 128
BLAST of mRNA_P-wetherbeei_contig6301.1.1 vs. uniprot
Match: A0A0K0ELL9_STRER (Uncharacterized protein n=1 Tax=Strongyloides stercoralis TaxID=6248 RepID=A0A0K0ELL9_STRER) HSP 1 Score: 69.7 bits (169), Expect = 1.550e-11 Identity = 33/78 (42.31%), Postives = 48/78 (61.54%), Query Frame = 1
Query: 4 FFEAAAVWMKGVGVDPLGIMTAKEASKILNQVGRFLNRLLGIPIAAQNELFQYFIHLHEAHVKQAKRDGRYDDGIRTI 237
FF +++GVG+ + + + N + +FLNRLLG+P+ AQN LF+YF H+ E ++QAK DG YD GI I
Sbjct: 1410 FFSDMRQYLEGVGILSVNKLGQYSVERDGNSIAKFLNRLLGLPVHAQNGLFEYFTHILEELIRQAKYDGTYDMGIMDI 1487
BLAST of mRNA_P-wetherbeei_contig6301.1.1 vs. uniprot
Match: A0A7S4A0M8_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A0M8_9STRA) HSP 1 Score: 66.6 bits (161), Expect = 1.850e-10 Identity = 33/87 (37.93%), Postives = 55/87 (63.22%), Query Frame = 1
Query: 1 TFFEAAAVWMKGVGVDPLGIMTAKEASKILNQVGRFLNRLLGIPIAAQNELFQYFIHLHEAHVKQAKRDGRYDDGIRTIQGQSVVVS 261
TF EA +W++ VG D + AK + + VG FLNRLLG+ ++ QN LF+ F L + V++A+R+ ++D+ I+ I G+ V ++
Sbjct: 1053 TFEEACQMWLERVGFD--FVKAAKTGNTARSSVGTFLNRLLGLRLSQQNALFEVFAKLVDHAVRKARREKKFDEAIKEIDGRRVEIT 1137
BLAST of mRNA_P-wetherbeei_contig6301.1.1 vs. uniprot
Match: A0A6P7S4D2_OCTVU (protein strawberry notch homolog 1 isoform X1 n=3 Tax=Octopus TaxID=6643 RepID=A0A6P7S4D2_OCTVU) HSP 1 Score: 65.9 bits (159), Expect = 3.460e-10 Identity = 36/97 (37.11%), Postives = 59/97 (60.82%), Query Frame = 1
Query: 37 VGVDPLGIMTAKEASKILNQVGRFLNRLLGIPIAAQNELFQYFIHLHEAHVKQAKRDGRYDDGIRTIQGQSVVVSAGSPLQIDRDGVKPGDVVSHQV 327
V +DP+ T + + L VG+FLNR+LG+P+ QN +F YFI + ++ AKR+G+Y++G+ I SV + G P ++ +D K G+ V+ V
Sbjct: 1005 VDMDPVKF-TVQVKKEDLGNVGKFLNRILGLPVMKQNLIFNYFIQCLDITIQNAKREGKYNEGLLDITASSVEM-VGEPKEVFKDLTK-GNTVTKLV 1098
BLAST of mRNA_P-wetherbeei_contig6301.1.1 vs. uniprot
Match: A0A090L1K8_STRRB (Protein strawberry notch homolog 2 n=1 Tax=Strongyloides ratti TaxID=34506 RepID=A0A090L1K8_STRRB) HSP 1 Score: 65.9 bits (159), Expect = 3.470e-10 Identity = 32/78 (41.03%), Postives = 47/78 (60.26%), Query Frame = 1
Query: 4 FFEAAAVWMKGVGVDPLGIMTAKEASKILNQVGRFLNRLLGIPIAAQNELFQYFIHLHEAHVKQAKRDGRYDDGIRTI 237
FF +++GVG+ + + + N + +FLNRLLG+P+ AQN LF+YF + E ++QAK DG YD GI I
Sbjct: 1409 FFSDMRQYLEGVGILSVSKLGQYSVERDGNSIAKFLNRLLGLPVHAQNALFEYFTLILEELIRQAKYDGTYDMGIMDI 1486
BLAST of mRNA_P-wetherbeei_contig6301.1.1 vs. uniprot
Match: A0A7R9B3U3_TIMSH (Hypothetical protein n=3 Tax=Timema TaxID=61471 RepID=A0A7R9B3U3_TIMSH) HSP 1 Score: 65.9 bits (159), Expect = 3.480e-10 Identity = 34/77 (44.16%), Postives = 48/77 (62.34%), Query Frame = 1
Query: 4 FFEAAAVWMKGVGV--DPLGIMTAKEASKILNQVGRFLNRLLGIPIAAQNELFQYFIHLHEAHVKQAKRDGRYDDGI 228
FFE A + GVG+ + G+ T + K N + +FLNR+LG+P+ QN LFQYF +A + QAK+ GR+D GI
Sbjct: 1380 FFEDVANALIGVGLINESEGVSTYRVLDKEFNNISKFLNRILGMPVDLQNRLFQYFTDTLKAIIAQAKKSGRFDLGI 1456
BLAST of mRNA_P-wetherbeei_contig6301.1.1 vs. uniprot
Match: A0A0K0FW75_STRVS (Protein strawberry notch homolog 2 (inferred by orthology to a human protein) n=2 Tax=Strongyloides TaxID=6247 RepID=A0A0K0FW75_STRVS) HSP 1 Score: 65.1 bits (157), Expect = 6.430e-10 Identity = 31/78 (39.74%), Postives = 47/78 (60.26%), Query Frame = 1
Query: 4 FFEAAAVWMKGVGVDPLGIMTAKEASKILNQVGRFLNRLLGIPIAAQNELFQYFIHLHEAHVKQAKRDGRYDDGIRTI 237
FF +++GVG+ + + + N + +FLNRLLG+P+ AQN LF+YF + E ++QAK DG YD GI +
Sbjct: 1115 FFSDMRQYLEGVGILSVNKLGQYSIERDGNSIAKFLNRLLGLPVHAQNALFEYFTLILEELIRQAKYDGTYDMGIMDV 1192
BLAST of mRNA_P-wetherbeei_contig6301.1.1 vs. uniprot
Match: A0A7D9HFC7_PARCT (Strawberry notch homolog 1 (Fragment) n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9HFC7_PARCT) HSP 1 Score: 64.7 bits (156), Expect = 8.660e-10 Identity = 34/75 (45.33%), Postives = 48/75 (64.00%), Query Frame = 1
Query: 34 GVGVDPLGIMTAKEASKILNQVGRFLNRLLGIPIAAQNELFQYFIHLHEAHVKQAKRDGRYDDGIRTI--QGQSV 252
GVG+ +G + K + +FLNRLLG+ +A QN LFQYF EA +++AKR+GRYD+GI + QG+ V
Sbjct: 804 GVGLIVVGQFGNEILDKDFANISKFLNRLLGVEVALQNALFQYFTSTLEAVIQRAKRNGRYDEGILDLGSQGEDV 878
BLAST of mRNA_P-wetherbeei_contig6301.1.1 vs. uniprot
Match: E3LX19_CAERE (CRE-LET-765 protein n=6 Tax=Caenorhabditis TaxID=6237 RepID=E3LX19_CAERE) HSP 1 Score: 64.3 bits (155), Expect = 1.210e-9 Identity = 32/78 (41.03%), Postives = 45/78 (57.69%), Query Frame = 1
Query: 4 FFEAAAVWMKGVGVDPLGIMTAKEASKILNQVGRFLNRLLGIPIAAQNELFQYFIHLHEAHVKQAKRDGRYDDGIRTI 237
FFE ++M+GVG+ M K + +FLNR+LG+P+ AQN LFQYF + + Q+K DG YD GI +
Sbjct: 1572 FFEDMRLYMEGVGLLAKNKMGQYTIEKEAATIPKFLNRILGLPVHAQNSLFQYFSEIVAELIAQSKHDGTYDTGIMDL 1649
BLAST of mRNA_P-wetherbeei_contig6301.1.1 vs. uniprot
Match: A0A8J2WWD9_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WWD9_9STRA) HSP 1 Score: 63.9 bits (154), Expect = 1.630e-9 Identity = 32/81 (39.51%), Postives = 48/81 (59.26%), Query Frame = 1
Query: 10 EAAAVWMKGVGVDPLGIMTAKEASKILNQVGRFLNRLLGIPIAAQNELFQYFIHLHEAHVKQAKRDGRYDDGIRTIQGQSV 252
A +W+ VG+ A A K + V +FLNR+LG+ ++ Q +LF YF E ++ AKRDG+Y GI+T+ G+SV
Sbjct: 946 HGAPLWLSLVGIAVASYEGAGSARKAV--VPKFLNRILGLEVSRQQKLFDYFARTLERMIRAAKRDGKYAQGIQTVDGRSV 1024 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6301.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig6301.1.1 >prot_P-wetherbeei_contig6301.1.1 ID=prot_P-wetherbeei_contig6301.1.1|Name=mRNA_P-wetherbeei_contig6301.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=104bp MKGVGVDPLGIMTAKEASKILNQVGRFLNRLLGIPIAAQNELFQYFIHLHback to top mRNA from alignment at P-wetherbeei_contig6301:185..717- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig6301.1.1 ID=mRNA_P-wetherbeei_contig6301.1.1|Name=mRNA_P-wetherbeei_contig6301.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=533bp|location=Sequence derived from alignment at P-wetherbeei_contig6301:185..717- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig6301:185..717- >mRNA_P-wetherbeei_contig6301.1.1 ID=mRNA_P-wetherbeei_contig6301.1.1|Name=mRNA_P-wetherbeei_contig6301.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=312bp|location=Sequence derived from alignment at P-wetherbeei_contig6301:185..717- (Phaeothamnion wetherbeei SAG_119_79)back to top |