mRNA_P-wetherbeei_contig6290.3.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6290.3.2
Unique NamemRNA_P-wetherbeei_contig6290.3.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig6290.3.2 vs. uniprot
Match: A0A0P9ELP4_RHOGW (PHD-type domain-containing protein (Fragment) n=1 Tax=Rhodotorula graminis (strain WP1) TaxID=578459 RepID=A0A0P9ELP4_RHOGW)

HSP 1 Score: 102 bits (253), Expect = 5.770e-23
Identity = 35/52 (67.31%), Postives = 44/52 (84.62%), Query Frame = 2 
Query:  935 DPHEPKYCFCERTAFGEMVGCDSDDCEREWFHFGCVGLKDMPEGKWYCSECV 1090
            DP+EP YC+C+R +FGEM+ C++DDC REWFH GCVGL+  PEGKWYC +CV
Sbjct:    1 DPNEPTYCYCDRVSFGEMIACENDDCSREWFHLGCVGLEHAPEGKWYCDDCV 52
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BLAST of mRNA_P-wetherbeei_contig6290.3.2 vs. uniprot
Match: S8CQY0_9LAMI (PHD-type domain-containing protein (Fragment) n=1 Tax=Genlisea aurea TaxID=192259 RepID=S8CQY0_9LAMI)

HSP 1 Score: 103 bits (256), Expect = 1.490e-22
Identity = 37/53 (69.81%), Postives = 46/53 (86.79%), Query Frame = 2 
Query:  932 VDPHEPKYCFCERTAFGEMVGCDSDDCEREWFHFGCVGLKDMPEGKWYCSECV 1090
            VDP+EP YCFC + ++GEMV CD+ DC+ EWFH+GCVGLK+ P+GKWYCSECV
Sbjct:   71 VDPNEPTYCFCSQVSYGEMVACDNPDCKIEWFHYGCVGLKEQPKGKWYCSECV 123
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BLAST of mRNA_P-wetherbeei_contig6290.3.2 vs. uniprot
Match: UPI00190508A2 (uncharacterized protein n=1 Tax=Cantharellus anzutake TaxID=1750568 RepID=UPI00190508A2)

HSP 1 Score: 98.6 bits (244), Expect = 1.020e-21
Identity = 33/52 (63.46%), Postives = 45/52 (86.54%), Query Frame = 2 
Query:  932 VDPHEPKYCFCERTAFGEMVGCDSDDCEREWFHFGCVGLKDMPEGKWYCSEC 1087
            VDP+EP+YC+C + ++GEMV CD++DCEREWFH+GC GLK+ P+ KWYC +C
Sbjct:    3 VDPNEPRYCYCTQVSYGEMVACDNEDCEREWFHYGCAGLKEAPKHKWYCRDC 54
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BLAST of mRNA_P-wetherbeei_contig6290.3.2 vs. uniprot
Match: A0A5C7ITF2_9ROSI (PHD finger protein ING n=1 Tax=Acer yangbiense TaxID=1000413 RepID=A0A5C7ITF2_9ROSI)

HSP 1 Score: 104 bits (260), Expect = 1.090e-21
Identity = 38/54 (70.37%), Postives = 47/54 (87.04%), Query Frame = 2 
Query:  932 VDPHEPKYCFCERTAFGEMVGCDSDDCEREWFHFGCVGLKDMPEGKWYCSECVA 1093
            VDP+EP YCFC + ++GEMV CD+ +C+ EWFHFGCVGLK+ P+GKWYCSECVA
Sbjct:  202 VDPNEPTYCFCNQVSYGEMVACDNQECKIEWFHFGCVGLKEQPKGKWYCSECVA 255
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BLAST of mRNA_P-wetherbeei_contig6290.3.2 vs. uniprot
Match: A0A7J7LEV2_9MAGN (PHD finger protein ING n=1 Tax=Kingdonia uniflora TaxID=39325 RepID=A0A7J7LEV2_9MAGN)

HSP 1 Score: 103 bits (256), Expect = 2.040e-21
Identity = 36/53 (67.92%), Postives = 46/53 (86.79%), Query Frame = 2 
Query:  932 VDPHEPKYCFCERTAFGEMVGCDSDDCEREWFHFGCVGLKDMPEGKWYCSECV 1090
            VDP+EP YCFC++ ++GEMV CD++DC  EWFH+GCVGLKD P+GKWYCS+C 
Sbjct:  173 VDPNEPTYCFCKQVSYGEMVACDNEDCNIEWFHYGCVGLKDQPKGKWYCSDCA 225
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BLAST of mRNA_P-wetherbeei_contig6290.3.2 vs. uniprot
Match: UPI001CFB3E5F (PHD finger protein ING1-like n=2 Tax=Anacardiaceae TaxID=4011 RepID=UPI001CFB3E5F)

HSP 1 Score: 103 bits (256), Expect = 2.710e-21
Identity = 37/54 (68.52%), Postives = 46/54 (85.19%), Query Frame = 2 
Query:  932 VDPHEPKYCFCERTAFGEMVGCDSDDCEREWFHFGCVGLKDMPEGKWYCSECVA 1093
            VDP+EP YCFC + ++GEMV CD+ DC+ EWFHFGCVGLK+ P+GKWYCS+C A
Sbjct:  186 VDPNEPTYCFCNQVSYGEMVACDNTDCKIEWFHFGCVGLKEQPKGKWYCSDCAA 239
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BLAST of mRNA_P-wetherbeei_contig6290.3.2 vs. uniprot
Match: A0A8B8MD88_ABRPR (PHD finger protein ING n=2 Tax=Abrus precatorius TaxID=3816 RepID=A0A8B8MD88_ABRPR)

HSP 1 Score: 102 bits (254), Expect = 3.810e-21
Identity = 37/54 (68.52%), Postives = 45/54 (83.33%), Query Frame = 2 
Query:  932 VDPHEPKYCFCERTAFGEMVGCDSDDCEREWFHFGCVGLKDMPEGKWYCSECVA 1093
            VDP+EP YCFC + ++GEMV CD+ DC+ EWFHFGCVGLK+ P+GKWYCS C A
Sbjct:  173 VDPNEPTYCFCNQVSYGEMVACDNPDCKIEWFHFGCVGLKEQPKGKWYCSNCAA 226
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BLAST of mRNA_P-wetherbeei_contig6290.3.2 vs. uniprot
Match: A0A2K3PS10_TRIPR (PHD finger protein ING n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3PS10_TRIPR)

HSP 1 Score: 102 bits (253), Expect = 3.880e-21
Identity = 37/54 (68.52%), Postives = 45/54 (83.33%), Query Frame = 2 
Query:  932 VDPHEPKYCFCERTAFGEMVGCDSDDCEREWFHFGCVGLKDMPEGKWYCSECVA 1093
            VDP+EP YCFC + ++GEMV CD+ DC+ EWFHFGCVGLK+ P+GKWYCS C A
Sbjct:  160 VDPNEPTYCFCNQVSYGEMVACDNPDCKIEWFHFGCVGLKEQPKGKWYCSTCAA 213
[Close]
BLAST of mRNA_P-wetherbeei_contig6290.3.2 vs. uniprot
Match: C3YVL7_BRAFL (Inhibitor of growth protein 3 n=4 Tax=Branchiostoma TaxID=7737 RepID=C3YVL7_BRAFL)

HSP 1 Score: 97.1 bits (240), Expect = 3.930e-21
Identity = 32/54 (59.26%), Postives = 45/54 (83.33%), Query Frame = 2 
Query:  935 DPHEPKYCFCERTAFGEMVGCDSDDCEREWFHFGCVGLKDMPEGKWYCSECVAA 1096
            DP+EP+YC C + ++G+MVGCD++DC  EWFH+GCVG+ + P+GKWYC +C AA
Sbjct:    6 DPNEPRYCICNQVSYGDMVGCDNEDCPIEWFHYGCVGISEPPKGKWYCPQCTAA 59
[Close]
BLAST of mRNA_P-wetherbeei_contig6290.3.2 vs. uniprot
Match: A0A498I3Y0_MALDO (PHD-type domain-containing protein n=1 Tax=Malus domestica TaxID=3750 RepID=A0A498I3Y0_MALDO)

HSP 1 Score: 97.1 bits (240), Expect = 3.930e-21
Identity = 34/54 (62.96%), Postives = 44/54 (81.48%), Query Frame = 2 
Query:  932 VDPHEPKYCFCERTAFGEMVGCDSDDCEREWFHFGCVGLKDMPEGKWYCSECVA 1093
            VDP+EP YC C + ++GEMV C++ +C+ EWFHFGCVGLKD P GKWYC++C A
Sbjct:    7 VDPNEPTYCLCNQVSYGEMVACENPNCKIEWFHFGCVGLKDKPRGKWYCTDCAA 60
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6290.3.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0P9ELP4_RHOGW5.770e-2367.31PHD-type domain-containing protein (Fragment) n=1 ... [more]
S8CQY0_9LAMI1.490e-2269.81PHD-type domain-containing protein (Fragment) n=1 ... [more]
UPI00190508A21.020e-2163.46uncharacterized protein n=1 Tax=Cantharellus anzut... [more]
A0A5C7ITF2_9ROSI1.090e-2170.37PHD finger protein ING n=1 Tax=Acer yangbiense Tax... [more]
A0A7J7LEV2_9MAGN2.040e-2167.92PHD finger protein ING n=1 Tax=Kingdonia uniflora ... [more]
UPI001CFB3E5F2.710e-2168.52PHD finger protein ING1-like n=2 Tax=Anacardiaceae... [more]
A0A8B8MD88_ABRPR3.810e-2168.52PHD finger protein ING n=2 Tax=Abrus precatorius T... [more]
A0A2K3PS10_TRIPR3.880e-2168.52PHD finger protein ING n=1 Tax=Trifolium pratense ... [more]
C3YVL7_BRAFL3.930e-2159.26Inhibitor of growth protein 3 n=4 Tax=Branchiostom... [more]
A0A498I3Y0_MALDO3.930e-2162.96PHD-type domain-containing protein n=1 Tax=Malus d... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6290contigP-wetherbeei_contig6290:1502..3496 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog3827.XP_004497737.1
PFAMsING
Model size1513
Max annot lvl35493|Streptophyta
KEGG koko:K11346
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0035064,GO:0042393,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464,GO:0140030,GO:0140034
Exons2
Evalue1.81e-22
EggNOG OGsCOG5034@1|root,KOG1973@2759|Eukaryota,37QVR@33090|Viridiplantae,3GAXE@35493|Streptophyta,4JGQQ@91835|fabids
DescriptionPhd finger protein
Cds size930
COG categoryB
BRITEko00000,ko03036
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186902.7218947-UTR-P-wetherbeei_contig6290:1501..18521683186902.7218947-UTR-P-wetherbeei_contig6290:1501..1852Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6290 1502..1852 -
1683186902.757603-UTR-P-wetherbeei_contig6290:3264..34961683186902.757603-UTR-P-wetherbeei_contig6290:3264..3496Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6290 3265..3496 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186902.7347832-CDS-P-wetherbeei_contig6290:1852..26801683186902.7347832-CDS-P-wetherbeei_contig6290:1852..2680Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6290 1853..2680 -
1683186902.7455177-CDS-P-wetherbeei_contig6290:3162..32641683186902.7455177-CDS-P-wetherbeei_contig6290:3162..3264Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6290 3163..3264 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6290.3.2prot_P-wetherbeei_contig6290.3.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6290 1853..3264 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6290.3.2

>prot_P-wetherbeei_contig6290.3.2 ID=prot_P-wetherbeei_contig6290.3.2|Name=mRNA_P-wetherbeei_contig6290.3.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=310bp
MVGESEQFQLATAAYDAVDAAFVVLDTAIRSFDEDAEQTTGRPLSRSLVP
PAAPASTCATSGDMAAAAAGLLRVASSSGSAQPRSALAVQAARAEEHAAM
LENKAEKAEEALAAFADKRENGKRGKKTKGEIAASERVAKLWEKARAARD
RAETLARQAAPQLAQLERAAREAARGSKAGAAAAARGGGGGGRKDKGKSK
AGAANAAANAAAAAAAAAAAAAGAGVEAAAVEYVDPHEPKYCFCERTAFG
EMVGCDSDDCEREWFHFGCVGLKDMPEGKWYCSECVAAGADKASKDGDGD
DADGGDHGD*
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mRNA from alignment at P-wetherbeei_contig6290:1502..3496-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6290.3.2 ID=mRNA_P-wetherbeei_contig6290.3.2|Name=mRNA_P-wetherbeei_contig6290.3.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1995bp|location=Sequence derived from alignment at P-wetherbeei_contig6290:1502..3496- (Phaeothamnion wetherbeei SAG_119_79)
CCCAGGGTCCCGGCTCGGTTGGCATGAACCATCTCAATTTTTTCGACATC
AGGTACTGAAATCTTGTGCTCCTTCTCTGTTTGCTGTCAGCTTAGGGGAA
CTTTCTGACCATTTGTCCGGTTTGGCATTTGAAGCTGTTCTCTCTTCCCA
ACCTCCGCTTTCGCACGGTTTCTCTCGTTTGCGCGCTGCGTTGGCCGCGG
CCTTTGCGTCTGTCGCGGCGCTTGTGTCGGCGATGGTTGGAGAGAGCGAG
CAGTTTCAGCTGGCGACAGCTGCGTACGACGCGGTGGACGCGGCCTTTGT
GGTGCTCGACACCGCCATCCGCAGCTTCGACGAGGTGGGGTTCCAATATT
GCCTATTCCGATCCAAGCCCGGGAACGTCCCATTCTTCGCCATTTTTGCT
CATTTCTCTCCGAACCGATCCAGTGAAAAGAGAGCTCCTCTCTGATACGA
GACATTTTTGCAAGAAGACGTATTGGACGGCGTTACTGTTGAACTCACGG
ATTGACTGTTACTGCGGTTACCACCGCAGATTTGCCTGTGTTCGTGTGGT
GTTCGATGAGCGAGAAAGAGTTGTCGCTGGCACCAGACGCCGTTTTTTGA
AAGGAAACTTTGTGTAGAATCATTGAAATGCGTGTCGTGATCGGCGTGCT
TGCCATTTCCGCACGATTGAACCTTTCTCATTGACCGTTGCTTGCCCGTT
CAGACTCGCTGCGTCTTTTCTTCCCCTGCGCCCCCGTCTTCTTCCCGCGC
TGCTGACGCTTTCTTCTCTGTCCAAATGCTGCAGCCCTTCCCCTACCTTC
TCTTGTTGACCTTCAGGACGCCGAGCAGACGACCGGCAGGCCTCTGTCCC
GGAGTCTGGTCCCACCTGCGGCACCGGCGTCGACTTGCGCCACCAGCGGC
GACATGGCTGCGGCCGCTGCGGGACTCCTCCGGGTCGCGTCCAGCAGTGG
CAGCGCGCAGCCGCGCAGCGCCCTCGCGGTCCAGGCCGCCCGCGCCGAGG
AACACGCGGCCATGCTGGAGAACAAGGCGGAGAAGGCGGAAGAAGCCCTG
GCGGCGTTCGCAGACAAGCGCGAAAACGGCAAGCGCGGGAAGAAGACAAA
GGGGGAGATCGCTGCTTCCGAACGGGTGGCGAAGCTCTGGGAGAAGGCAC
GCGCCGCACGGGATCGGGCGGAGACGTTGGCCCGCCAGGCGGCGCCCCAA
CTCGCTCAGCTTGAGAGAGCGGCGAGAGAGGCGGCCCGGGGCAGCAAGGC
CGGTGCGGCGGCAGCGGCACGCGGCGGTGGCGGCGGCGGCAGGAAGGACA
AGGGCAAGAGCAAGGCGGGTGCCGCAAACGCTGCCGCAAACGCTGCGGCG
GCTGCTGCTGCGGCGGCGGCAGCGGCGGCGGGGGCGGGCGTCGAAGCTGC
TGCGGTGGAGTATGTGGACCCGCATGAGCCCAAGTACTGCTTCTGCGAGC
GGACGGCGTTTGGGGAGATGGTGGGGTGCGACAGTGATGACTGCGAGCGC
GAGTGGTTCCACTTCGGCTGTGTCGGGCTCAAGGACATGCCCGAGGGCAA
GTGGTACTGCTCGGAATGCGTCGCAGCGGGAGCCGACAAGGCATCCAAAG
ACGGCGATGGCGACGACGCCGACGGCGGCGATCACGGTGACTGATATGGA
CGTTCGGCGTGAGCATCAGCGTGGCCGGCGACGGCCGGCGGTGTAGATGA
GGGGGTGTAGCGCGACGGTATTTGCGGCCGATTGCAGCTGTGCTGGGATG
AGAAAGGTGATATCGATGCGTGTCGTGTAACGACGGATGACCAGGGGCAC
CTTTCAGGATGGCCGTTGTCCCAATCTTCTAAAGTATGAAGGGAAATGCG
GTTCTGGGTGGAACACTTCACTGCCTTTCTTTTCTCCTCGTGCTCTAGGC
CTCCCGGTTACTTTTCACGTTGCAATAGAAGACCGCCGCTCACTGCAGCC
AGAGGCAGACCAACAACAGAGCAATACAAAGAGAACACTTCGGGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6290:1502..3496-

>mRNA_P-wetherbeei_contig6290.3.2 ID=mRNA_P-wetherbeei_contig6290.3.2|Name=mRNA_P-wetherbeei_contig6290.3.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=930bp|location=Sequence derived from alignment at P-wetherbeei_contig6290:1502..3496- (Phaeothamnion wetherbeei SAG_119_79)
ATGGTTGGAGAGAGCGAGCAGTTTCAGCTGGCGACAGCTGCGTACGACGC
GGTGGACGCGGCCTTTGTGGTGCTCGACACCGCCATCCGCAGCTTCGACG
AGGACGCCGAGCAGACGACCGGCAGGCCTCTGTCCCGGAGTCTGGTCCCA
CCTGCGGCACCGGCGTCGACTTGCGCCACCAGCGGCGACATGGCTGCGGC
CGCTGCGGGACTCCTCCGGGTCGCGTCCAGCAGTGGCAGCGCGCAGCCGC
GCAGCGCCCTCGCGGTCCAGGCCGCCCGCGCCGAGGAACACGCGGCCATG
CTGGAGAACAAGGCGGAGAAGGCGGAAGAAGCCCTGGCGGCGTTCGCAGA
CAAGCGCGAAAACGGCAAGCGCGGGAAGAAGACAAAGGGGGAGATCGCTG
CTTCCGAACGGGTGGCGAAGCTCTGGGAGAAGGCACGCGCCGCACGGGAT
CGGGCGGAGACGTTGGCCCGCCAGGCGGCGCCCCAACTCGCTCAGCTTGA
GAGAGCGGCGAGAGAGGCGGCCCGGGGCAGCAAGGCCGGTGCGGCGGCAG
CGGCACGCGGCGGTGGCGGCGGCGGCAGGAAGGACAAGGGCAAGAGCAAG
GCGGGTGCCGCAAACGCTGCCGCAAACGCTGCGGCGGCTGCTGCTGCGGC
GGCGGCAGCGGCGGCGGGGGCGGGCGTCGAAGCTGCTGCGGTGGAGTATG
TGGACCCGCATGAGCCCAAGTACTGCTTCTGCGAGCGGACGGCGTTTGGG
GAGATGGTGGGGTGCGACAGTGATGACTGCGAGCGCGAGTGGTTCCACTT
CGGCTGTGTCGGGCTCAAGGACATGCCCGAGGGCAAGTGGTACTGCTCGG
AATGCGTCGCAGCGGGAGCCGACAAGGCATCCAAAGACGGCGATGGCGAC
GACGCCGACGGCGGCGATCACGGTGACTGA
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