mRNA_P-wetherbeei_contig6280.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6280.1.1
Unique NamemRNA_P-wetherbeei_contig6280.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig6280.1.1 vs. uniprot
Match: A0A7S2RUF9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RUF9_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 2.230e-9
Identity = 105/382 (27.49%), Postives = 149/382 (39.01%), Query Frame = 3 
Query:   33 GDGSPATYAAVTQGALAAYEPLRQQIAANV---------ERQPGLLASIMEENGRFVRAKAADAVTLAREAFLQRLHRGQDVYFELHAQLSEGSGFYGDLLRRLAQLNQRSEDLCYTQSVQRRDFEVQFSHQEERARQQAQDEELARHMAAGVDLRGAGPTAAAGSPPAAXXXXXXXXXXXXXTMQQQPGQYNPYNRPLP-QTPQMLATSQAPG----------GGGGNPFSAPAPYVPLPGYQGGYGGQNGGWPPQLQQ----PPQXQP---MPQFVQQQXXXXXXXXXXXXXXXXXXXXXXXXXSYYEQQSAAAPGMPXQQAQQGFYLPPGYNQS-----GMDPKVARMVEMGFPVERARNALSACGGDQEAAVSKLLSE 1082
            GDG+  + AA ++  L   E +R ++ A           E Q   +A +M +N  F +A+ AD  TL R+  +Q ++     + + H+QLS+ S FYGDLL RL Q+    E   Y Q V R++F  Q    + +  Q+  D  LA+ +A  + +    P  A  + PA               M   PG   P    +  QTP M   S A G           G     +  AP  P   YQ G G    G+PP        PP   P    P                                Y        P      A   +Y P     S     G +PKVAR++EMGFP ++   AL A   ++EAA ++LLSE
Sbjct:  603 GDGAGISTAAPSKELLTMLEDVRAKVLAPASLAPLKEAREEQERQVAEVMAKNHEFTQARNADETTLKRQQIIQGVNAVVTKFSDFHSQLSDASYFYGDLLARLQQIMNAIEGYVYAQQVVRQEFLEQQDAAKSKQSQEDLDAALAQRLAQELQM----PPPAFPAGPATPGVPAHAAG-----MASFPGPRPPSTDAIAFQTPAMGQYSTATGPPVHGFGASAAGAXXXXTTAAP--PSYSYQPGSGLGAPGYPPPSNSLGHMPPPTMPGAYSPSSYSMPSSTGPPFPAVLNTAAGQPAFTGAPPGYSAXXXXXXPAYGASPAP-AYYSPHPVAGSMPGGLGSNPKVARLMEMGFPQDKVVAALRAHNDNEEAAANQLLSE 972
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6280.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S2RUF9_9STRA2.230e-927.49Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6280contigP-wetherbeei_contig6280:2..1276 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FMH5
Preferred namePDCD6IP
PFAMsALIX_LYPXL_bnd,BRO1
Model size1275
Max annot lvl2759|Eukaryota
KEGG koko:K12200
KEGG Pathwayko04144,map04144
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000278,GO:0000281,GO:0000815,GO:0000910,GO:0000912,GO:0000915,GO:0000920,GO:0001664,GO:0001772,GO:0001932,GO:0001934,GO:0003006,GO:0003674,GO:0005102,GO:0005112,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005770,GO:0005771,GO:0005783,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0005886,GO:0005911,GO:0006082,GO:0006508,GO:0006511,GO:0006790,GO:0006807,GO:0006810,GO:0006887,GO:0006915,GO:0006996,GO:0007010,GO:0007015,GO:0007032,GO:0007033,GO:0007043,GO:0007049,GO:0007163,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007292,GO:0008022,GO:0008104,GO:0008150,GO:0008152,GO:0008154,GO:0008219,GO:0008356,GO:0009056,GO:0009057,GO:0009058,GO:0009268,GO:0009308,GO:0009405,GO:0009506,GO:0009628,GO:0009653,GO:0009889,GO:0009891,GO:0009893,GO:0009894,GO:0009966,GO:0009967,GO:0009987,GO:0010008,GO:0010035,GO:0010038,GO:0010226,GO:0010256,GO:0010562,GO:0010564,GO:0010565,GO:0010570,GO:0010604,GO:0010638,GO:0010646,GO:0010647,GO:0010824,GO:0012501,GO:0012505,GO:0015629,GO:0015630,GO:0016020,GO:0016032,GO:0016043,GO:0016050,GO:0016053,GO:0016192,GO:0016197,GO:0016323,GO:0016999,GO:0017000,GO:0017124,GO:0017144,GO:0017145,GO:0017157,GO:0018130,GO:0019058,GO:0019068,GO:0019220,GO:0019222,GO:0019538,GO:0019748,GO:0019752,GO:0019904,GO:0019941,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0022603,GO:0022607,GO:0023051,GO:0023056,GO:0030011,GO:0030029,GO:0030036,GO:0030041,GO:0030054,GO:0030154,GO:0030163,GO:0030447,GO:0030496,GO:0030653,GO:0030654,GO:0030865,GO:0030866,GO:0031032,GO:0031090,GO:0031156,GO:0031285,GO:0031286,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031399,GO:0031401,GO:0031410,GO:0031871,GO:0031982,GO:0032101,GO:0032102,GO:0032104,GO:0032105,GO:0032107,GO:0032108,GO:0032182,GO:0032268,GO:0032270,GO:0032386,GO:0032456,GO:0032501,GO:0032502,GO:0032504,GO:0032506,GO:0032787,GO:0032872,GO:0032874,GO:0032879,GO:0032880,GO:0032886,GO:0032940,GO:0032991,GO:0033036,GO:0033043,GO:0033157,GO:0033238,GO:0033240,GO:0033244,GO:0033246,GO:0033365,GO:0034248,GO:0034250,GO:0034329,GO:0034330,GO:0034613,GO:0034622,GO:0034641,GO:0035088,GO:0035090,GO:0036176,GO:0036177,GO:0036244,GO:0036257,GO:0036258,GO:0036452,GO:0039702,GO:0040007,GO:0040008,GO:0042078,GO:0042173,GO:0042176,GO:0042221,GO:0042306,GO:0042316,GO:0042318,GO:0042325,GO:0042327,GO:0042641,GO:0042762,GO:0042802,GO:0042803,GO:0043130,GO:0043162,GO:0043170,GO:0043209,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043230,GO:0043231,GO:0043232,GO:0043297,GO:0043408,GO:0043410,GO:0043436,GO:0043455,GO:0043603,GO:0043604,GO:0043621,GO:0043632,GO:0043900,GO:0043901,GO:0043933,GO:0043937,GO:0043938,GO:0044085,GO:0044087,GO:0044089,GO:0044106,GO:0044182,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044403,GO:0044409,GO:0044419,GO:0044421,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044432,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0044550,GO:0044703,GO:0044837,GO:0045171,GO:0045197,GO:0045199,GO:0045216,GO:0045595,GO:0045596,GO:0045597,GO:0045881,GO:0045921,GO:0045927,GO:0045937,GO:0046328,GO:0046330,GO:0046394,GO:0046483,GO:0046605,GO:0046755,GO:0046822,GO:0046903,GO:0046907,GO:0046983,GO:0048132,GO:0048133,GO:0048232,GO:0048306,GO:0048468,GO:0048477,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0048609,GO:0048856,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051046,GO:0051047,GO:0051049,GO:0051050,GO:0051093,GO:0051094,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051174,GO:0051176,GO:0051179,GO:0051223,GO:0051234,GO:0051239,GO:0051241,GO:0051246,GO:0051247,GO:0051258,GO:0051259,GO:0051260,GO:0051301,GO:0051493,GO:0051603,GO:0051641,GO:0051649,GO:0051701,GO:0051704,GO:0051716,GO:0051726,GO:0051828,GO:0055037,GO:0055044,GO:0060255,GO:0060341,GO:0060627,GO:0061245,GO:0061640,GO:0062012,GO:0062013,GO:0065003,GO:0065007,GO:0065008,GO:0070062,GO:0070201,GO:0070302,GO:0070304,GO:0070507,GO:0070727,GO:0070830,GO:0070887,GO:0070925,GO:0070938,GO:0070971,GO:0071214,GO:0071241,GO:0071248,GO:0071285,GO:0071467,GO:0071704,GO:0071840,GO:0071944,GO:0072330,GO:0072338,GO:0072339,GO:0075260,GO:0075262,GO:0080090,GO:0080134,GO:0080135,GO:0090033,GO:0090087,GO:0090543,GO:0090559,GO:0090611,GO:0097435,GO:0097708,GO:0097734,GO:0098588,GO:0098590,GO:0098722,GO:0098728,GO:0098796,GO:0098805,GO:0104004,GO:0140112,GO:1900180,GO:1900196,GO:1900198,GO:1900376,GO:1900378,GO:1900428,GO:1900430,GO:1901360,GO:1901362,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1902115,GO:1902117,GO:1902531,GO:1902533,GO:1903047,GO:1903530,GO:1903532,GO:1903541,GO:1903543,GO:1903551,GO:1903553,GO:1903561,GO:1903827,GO:1904589,GO:1990182,GO:2000026,GO:2000241,GO:2000242
Exons1
Evalue4.64e-29
EggNOG OGsKOG2220@1|root,KOG2220@2759|Eukaryota
Descriptionprotein localization
Cds size1080
COG categoryS
BRITEko00000,ko00001,ko04131,ko04147
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186902.306204-UTR-P-wetherbeei_contig6280:1..91683186902.306204-UTR-P-wetherbeei_contig6280:1..9Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6280 2..9 +
1683186902.3248837-UTR-P-wetherbeei_contig6280:1089..12761683186902.3248837-UTR-P-wetherbeei_contig6280:1089..1276Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6280 1090..1276 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186902.3167322-CDS-P-wetherbeei_contig6280:9..10891683186902.3167322-CDS-P-wetherbeei_contig6280:9..1089Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6280 10..1089 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6280.1.1prot_P-wetherbeei_contig6280.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6280 10..1089 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6280.1.1

>prot_P-wetherbeei_contig6280.1.1 ID=prot_P-wetherbeei_contig6280.1.1|Name=mRNA_P-wetherbeei_contig6280.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=360bp
MEAAMAGGGDGSPATYAAVTQGALAAYEPLRQQIAANVERQPGLLASIME
ENGRFVRAKAADAVTLAREAFLQRLHRGQDVYFELHAQLSEGSGFYGDLL
RRLAQLNQRSEDLCYTQSVQRRDFEVQFSHQEERARQQAQDEELARHMAA
GVDLRGAGPTAAAGSPPAAPPAGPVQYPPSYPTMQQQPGQYNPYNRPLPQ
TPQMLATSQAPGGGGGNPFSAPAPYVPLPGYQGGYGGQNGGWPPQLQQPP
QQQPMPQFVQQQHQQYNQQPLAPHHPPPQQPQQPQQPSYYEQQSAAAPGM
PPQQAQQGFYLPPGYNQSGMDPKVARMVEMGFPVERARNALSACGGDQEA
AVSKLLSEG*
back to top

mRNA from alignment at P-wetherbeei_contig6280:2..1276+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6280.1.1 ID=mRNA_P-wetherbeei_contig6280.1.1|Name=mRNA_P-wetherbeei_contig6280.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1275bp|location=Sequence derived from alignment at P-wetherbeei_contig6280:2..1276+ (Phaeothamnion wetherbeei SAG_119_79)
CGCTGCTCATGGAGGCGGCCATGGCGGGCGGTGGTGACGGAAGCCCGGCC
ACCTACGCCGCCGTGACACAGGGCGCCCTCGCCGCCTACGAGCCGCTACG
GCAGCAGATCGCGGCCAACGTGGAGCGGCAGCCGGGGCTGCTGGCGTCCA
TCATGGAGGAGAACGGCCGCTTCGTGCGTGCCAAGGCCGCCGACGCAGTG
ACGCTGGCGCGCGAGGCCTTTCTGCAGCGGCTGCACCGCGGCCAGGATGT
CTACTTTGAGCTGCATGCCCAGCTCTCGGAAGGGTCCGGCTTTTACGGCG
ACCTCTTGCGGCGGCTGGCCCAGCTCAACCAGCGGAGCGAGGACCTGTGC
TATACGCAGTCGGTACAGCGGCGGGACTTCGAGGTGCAGTTCTCACACCA
AGAAGAGCGGGCGCGGCAGCAGGCGCAGGACGAGGAGTTGGCACGGCACA
TGGCCGCGGGAGTGGACCTCCGCGGAGCGGGACCGACGGCGGCGGCGGGT
TCACCACCGGCGGCACCGCCGGCGGGACCTGTGCAGTATCCGCCGTCGTA
CCCGACCATGCAGCAGCAGCCGGGGCAGTACAACCCGTATAACCGGCCGC
TGCCGCAGACGCCGCAGATGCTGGCGACGTCACAGGCGCCCGGCGGCGGA
GGTGGGAATCCGTTCAGCGCTCCCGCACCGTATGTGCCGCTGCCAGGTTA
CCAAGGCGGCTACGGCGGGCAGAACGGCGGCTGGCCGCCTCAACTGCAGC
AGCCGCCGCAGCAGCAGCCGATGCCGCAGTTCGTACAGCAGCAGCATCAG
CAGTACAACCAACAGCCGTTGGCACCACACCACCCGCCGCCGCAGCAGCC
GCAGCAGCCGCAGCAACCATCCTATTACGAGCAGCAGTCGGCCGCAGCGC
CGGGGATGCCACCGCAGCAGGCGCAGCAGGGGTTCTACCTACCGCCGGGT
TACAACCAATCAGGAATGGACCCGAAGGTTGCACGGATGGTAGAAATGGG
CTTCCCAGTGGAACGGGCCCGCAACGCACTGTCGGCGTGCGGCGGCGACC
AAGAGGCAGCCGTCTCAAAGTTGCTTAGCGAGGGGTGATGATATGGGTGG
TGGTCGCATCCTGAGTCGAAGGTTATGGGAAACGCTGGTGTGCTGCAGCC
GCTTCTTAAAATGGCGGCAATCATGCCACGATGCACGACACGGTGTAAAA
CATGTCCAATGTAAGTAAACTCACACGAATGGACACGAACGGCTCTCTTT
TTCGCTTTTCAGCGTTTCAATGAAG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig6280:2..1276+

>mRNA_P-wetherbeei_contig6280.1.1 ID=mRNA_P-wetherbeei_contig6280.1.1|Name=mRNA_P-wetherbeei_contig6280.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1080bp|location=Sequence derived from alignment at P-wetherbeei_contig6280:2..1276+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGAGGCGGCCATGGCGGGCGGTGGTGACGGAAGCCCGGCCACCTACGC
CGCCGTGACACAGGGCGCCCTCGCCGCCTACGAGCCGCTACGGCAGCAGA
TCGCGGCCAACGTGGAGCGGCAGCCGGGGCTGCTGGCGTCCATCATGGAG
GAGAACGGCCGCTTCGTGCGTGCCAAGGCCGCCGACGCAGTGACGCTGGC
GCGCGAGGCCTTTCTGCAGCGGCTGCACCGCGGCCAGGATGTCTACTTTG
AGCTGCATGCCCAGCTCTCGGAAGGGTCCGGCTTTTACGGCGACCTCTTG
CGGCGGCTGGCCCAGCTCAACCAGCGGAGCGAGGACCTGTGCTATACGCA
GTCGGTACAGCGGCGGGACTTCGAGGTGCAGTTCTCACACCAAGAAGAGC
GGGCGCGGCAGCAGGCGCAGGACGAGGAGTTGGCACGGCACATGGCCGCG
GGAGTGGACCTCCGCGGAGCGGGACCGACGGCGGCGGCGGGTTCACCACC
GGCGGCACCGCCGGCGGGACCTGTGCAGTATCCGCCGTCGTACCCGACCA
TGCAGCAGCAGCCGGGGCAGTACAACCCGTATAACCGGCCGCTGCCGCAG
ACGCCGCAGATGCTGGCGACGTCACAGGCGCCCGGCGGCGGAGGTGGGAA
TCCGTTCAGCGCTCCCGCACCGTATGTGCCGCTGCCAGGTTACCAAGGCG
GCTACGGCGGGCAGAACGGCGGCTGGCCGCCTCAACTGCAGCAGCCGCCG
CAGCAGCAGCCGATGCCGCAGTTCGTACAGCAGCAGCATCAGCAGTACAA
CCAACAGCCGTTGGCACCACACCACCCGCCGCCGCAGCAGCCGCAGCAGC
CGCAGCAACCATCCTATTACGAGCAGCAGTCGGCCGCAGCGCCGGGGATG
CCACCGCAGCAGGCGCAGCAGGGGTTCTACCTACCGCCGGGTTACAACCA
ATCAGGAATGGACCCGAAGGTTGCACGGATGGTAGAAATGGGCTTCCCAG
TGGAACGGGCCCGCAACGCACTGTCGGCGTGCGGCGGCGACCAAGAGGCA
GCCGTCTCAAAGTTGCTTAGCGAGGGGTGA
back to top