mRNA_P-wetherbeei_contig6278.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6278.1.1
Unique NamemRNA_P-wetherbeei_contig6278.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6278.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6278contigP-wetherbeei_contig6278:1232..2699 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1468
Hectar predicted targeting categoryother localisation
Exons1
Cds size1269
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186902.0639906-UTR-P-wetherbeei_contig6278:1231..13381683186902.0639906-UTR-P-wetherbeei_contig6278:1231..1338Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6278 1232..1338 +
1683186902.0818348-UTR-P-wetherbeei_contig6278:2607..26991683186902.0818348-UTR-P-wetherbeei_contig6278:2607..2699Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6278 2608..2699 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186902.0731356-CDS-P-wetherbeei_contig6278:1338..26071683186902.0731356-CDS-P-wetherbeei_contig6278:1338..2607Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6278 1339..2607 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6278.1.1prot_P-wetherbeei_contig6278.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6278 1339..2607 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6278.1.1

>prot_P-wetherbeei_contig6278.1.1 ID=prot_P-wetherbeei_contig6278.1.1|Name=mRNA_P-wetherbeei_contig6278.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=423bp
MPTAAARDLLSYDDSDDSGSGAVRVSAPPPPPSSLRAGGSVNLLGGDDLM
RVDVGGAGGGGTGGDAAGPALFGDMTMKGAGQHNVAAVPASSAFSFIAQP
GPGGDGSGDGSSGDGSGVGSERGGGGNESTSDLLGSFSPPKTNARKDATT
QEFAPAPAEVADLLGAMSLGGARAAVPPPHPSAAAAASHWGGLDPLGPKS
SEPPPALELQLQPAVPRPAASSPPAVAATAAPVQMVPGAASSATMMPGPR
AWPSQGQGHVGGGIARQYPMEAAGAGLWAAPGLARHGSGPLPPVLHQQQQ
HQQQQQQQFLLMQQRAMQQQQMQHQQQMQQTQQMQQHQQMLALQQRGAQG
MSAANGMGSGASVTMAWGSPALGNRAGPPRMTIPELHGNSHPAAVPGNSG
GGRRPVDSFSFVQDALRDSTSG*
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mRNA from alignment at P-wetherbeei_contig6278:1232..2699+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6278.1.1 ID=mRNA_P-wetherbeei_contig6278.1.1|Name=mRNA_P-wetherbeei_contig6278.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1468bp|location=Sequence derived from alignment at P-wetherbeei_contig6278:1232..2699+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGTGACGGCGGCTGTTTCGTCAATGGCCTCTCTGAGGGAGGTGGTGCG
GCAGAGGAGCCCGTGACGCCGGGCGAAGACGGCGCGACGGTGGCGTTGGC
GGCGTCGATGCCGACCGCCGCAGCGCGCGACCTGCTTAGCTACGACGACT
CTGACGACAGCGGCAGCGGCGCCGTGCGTGTCTCAGCGCCGCCTCCGCCG
CCTTCTTCCCTGCGAGCAGGAGGAAGCGTAAACCTCCTTGGCGGGGATGA
CCTTATGAGGGTCGATGTCGGCGGAGCCGGAGGCGGCGGCACCGGCGGCG
ACGCGGCGGGGCCGGCGCTGTTTGGCGACATGACGATGAAAGGGGCAGGC
CAGCACAATGTGGCCGCTGTCCCAGCATCTTCGGCATTCTCCTTTATCGC
CCAACCTGGGCCCGGTGGCGACGGCAGCGGCGACGGCAGCAGTGGCGACG
GAAGCGGCGTCGGTAGCGAGCGCGGCGGTGGTGGCAACGAGTCTACTTCC
GACCTGCTGGGGAGCTTTTCGCCGCCAAAAACGAATGCCCGGAAGGACGC
CACGACGCAAGAGTTCGCTCCTGCGCCCGCCGAGGTGGCGGATTTACTTG
GCGCCATGTCCTTGGGAGGCGCCCGCGCTGCCGTTCCGCCGCCGCATCCG
TCGGCGGCGGCTGCGGCGTCCCATTGGGGAGGTCTTGACCCGCTGGGGCC
TAAGAGCAGCGAGCCGCCGCCGGCGCTGGAGCTACAGCTGCAGCCAGCGG
TCCCGCGGCCCGCAGCGTCATCGCCGCCGGCGGTGGCAGCGACGGCGGCG
CCGGTGCAGATGGTGCCTGGTGCAGCCTCTTCTGCGACTATGATGCCCGG
ACCTCGGGCTTGGCCGAGCCAAGGCCAGGGCCATGTCGGCGGCGGGATCG
CGAGGCAGTATCCCATGGAGGCGGCGGGGGCGGGGCTTTGGGCGGCACCG
GGCCTTGCGCGACATGGATCGGGCCCCCTGCCGCCGGTGCTCCATCAGCA
ACAGCAGCACCAGCAGCAGCAGCAGCAGCAGTTCCTGCTCATGCAACAGC
GCGCCATGCAGCAGCAGCAAATGCAGCACCAGCAGCAGATGCAGCAGACG
CAGCAGATGCAGCAGCACCAGCAAATGCTGGCGCTGCAGCAGAGAGGGGC
CCAAGGAATGTCCGCTGCCAACGGCATGGGCTCTGGCGCCTCCGTAACAA
TGGCATGGGGTTCGCCCGCCCTCGGCAACCGGGCGGGGCCGCCCCGCATG
ACCATTCCCGAGCTTCATGGGAATAGCCACCCGGCCGCCGTGCCGGGGAA
CAGCGGCGGTGGAAGACGCCCAGTGGATTCCTTCAGCTTCGTGCAGGATG
CCTTGAGGGATTCCACCTCGGGCTAGCCCCTTTTTTGGGCGACCATGAAC
AGGATGGATAACCAAACTTGGGAAGGAGTTATCGAGAAGGGGATAGAAAG
CAATAATACCGCTAGTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6278:1232..2699+

>mRNA_P-wetherbeei_contig6278.1.1 ID=mRNA_P-wetherbeei_contig6278.1.1|Name=mRNA_P-wetherbeei_contig6278.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1269bp|location=Sequence derived from alignment at P-wetherbeei_contig6278:1232..2699+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCGACCGCCGCAGCGCGCGACCTGCTTAGCTACGACGACTCTGACGA
CAGCGGCAGCGGCGCCGTGCGTGTCTCAGCGCCGCCTCCGCCGCCTTCTT
CCCTGCGAGCAGGAGGAAGCGTAAACCTCCTTGGCGGGGATGACCTTATG
AGGGTCGATGTCGGCGGAGCCGGAGGCGGCGGCACCGGCGGCGACGCGGC
GGGGCCGGCGCTGTTTGGCGACATGACGATGAAAGGGGCAGGCCAGCACA
ATGTGGCCGCTGTCCCAGCATCTTCGGCATTCTCCTTTATCGCCCAACCT
GGGCCCGGTGGCGACGGCAGCGGCGACGGCAGCAGTGGCGACGGAAGCGG
CGTCGGTAGCGAGCGCGGCGGTGGTGGCAACGAGTCTACTTCCGACCTGC
TGGGGAGCTTTTCGCCGCCAAAAACGAATGCCCGGAAGGACGCCACGACG
CAAGAGTTCGCTCCTGCGCCCGCCGAGGTGGCGGATTTACTTGGCGCCAT
GTCCTTGGGAGGCGCCCGCGCTGCCGTTCCGCCGCCGCATCCGTCGGCGG
CGGCTGCGGCGTCCCATTGGGGAGGTCTTGACCCGCTGGGGCCTAAGAGC
AGCGAGCCGCCGCCGGCGCTGGAGCTACAGCTGCAGCCAGCGGTCCCGCG
GCCCGCAGCGTCATCGCCGCCGGCGGTGGCAGCGACGGCGGCGCCGGTGC
AGATGGTGCCTGGTGCAGCCTCTTCTGCGACTATGATGCCCGGACCTCGG
GCTTGGCCGAGCCAAGGCCAGGGCCATGTCGGCGGCGGGATCGCGAGGCA
GTATCCCATGGAGGCGGCGGGGGCGGGGCTTTGGGCGGCACCGGGCCTTG
CGCGACATGGATCGGGCCCCCTGCCGCCGGTGCTCCATCAGCAACAGCAG
CACCAGCAGCAGCAGCAGCAGCAGTTCCTGCTCATGCAACAGCGCGCCAT
GCAGCAGCAGCAAATGCAGCACCAGCAGCAGATGCAGCAGACGCAGCAGA
TGCAGCAGCACCAGCAAATGCTGGCGCTGCAGCAGAGAGGGGCCCAAGGA
ATGTCCGCTGCCAACGGCATGGGCTCTGGCGCCTCCGTAACAATGGCATG
GGGTTCGCCCGCCCTCGGCAACCGGGCGGGGCCGCCCCGCATGACCATTC
CCGAGCTTCATGGGAATAGCCACCCGGCCGCCGTGCCGGGGAACAGCGGC
GGTGGAAGACGCCCAGTGGATTCCTTCAGCTTCGTGCAGGATGCCTTGAG
GGATTCCACCTCGGGCTAG
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