mRNA_P-wetherbeei_contig6273.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6273.1.1
Unique NamemRNA_P-wetherbeei_contig6273.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6273.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6273contigP-wetherbeei_contig6273:2..1425 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1424
Hectar predicted targeting categoryother localisation
Exons1
Cds size1194
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186901.6532547-UTR-P-wetherbeei_contig6273:1..2211683186901.6532547-UTR-P-wetherbeei_contig6273:1..221Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6273 2..221 -
1683186901.6743798-UTR-P-wetherbeei_contig6273:1415..14251683186901.6743798-UTR-P-wetherbeei_contig6273:1415..1425Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6273 1416..1425 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186901.6639295-CDS-P-wetherbeei_contig6273:221..14151683186901.6639295-CDS-P-wetherbeei_contig6273:221..1415Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6273 222..1415 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6273.1.1prot_P-wetherbeei_contig6273.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6273 222..1415 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6273.1.1

>prot_P-wetherbeei_contig6273.1.1 ID=prot_P-wetherbeei_contig6273.1.1|Name=mRNA_P-wetherbeei_contig6273.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=398bp
MYRGEVQDMGMPRPASPVRKTTTASAASPAAKPLSSAVNAVSAASAFAAA
GAAAVGAASAAGNGVQSLPPPSQTPPTSQASSVGAARSALSNNVNSGAAR
EGDVIDAHEAVGEAEASNFSPPDLLLFPSPASAASTVPPLALPPVAALSV
PRDTTIDEKPQVPRDLPSPPPMPLQPQQQDQPRRPSANASQSPLPPPPAG
QAGDPKGNRSGAIQPKSVFPRRGSAKGIFSRLDGSGGGGGGGSSGGFAGL
TSSGGFGGFGGGGGSGDADGSGSLGESLSSMSTQMSAAMSPLKRIGAGNS
FFGRPGDGKDGKAPDGKDGKDKGGSSGGGGFGSGGAFGNAFGGGGGSKKG
PLGNFRPFGGGAGGKGSGGFGSLLLDDDDEPPTPAESADETEGGRAL*
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mRNA from alignment at P-wetherbeei_contig6273:2..1425-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6273.1.1 ID=mRNA_P-wetherbeei_contig6273.1.1|Name=mRNA_P-wetherbeei_contig6273.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1424bp|location=Sequence derived from alignment at P-wetherbeei_contig6273:2..1425- (Phaeothamnion wetherbeei SAG_119_79)
TCTCGAGGCAATGTACCGCGGGGAGGTGCAAGACATGGGCATGCCGCGGC
CGGCCAGCCCCGTCCGCAAAACAACGACGGCATCCGCCGCCTCGCCTGCC
GCCAAGCCGCTCTCCAGCGCCGTCAACGCGGTTTCGGCGGCTTCGGCATT
TGCGGCGGCCGGCGCGGCGGCGGTGGGAGCGGCTTCGGCTGCCGGGAACG
GAGTGCAATCGCTGCCGCCACCGTCGCAGACGCCACCGACGTCACAGGCG
TCGTCGGTGGGCGCGGCCAGAAGCGCCTTGTCAAACAACGTGAACAGTGG
TGCTGCGAGGGAGGGCGATGTTATCGATGCGCACGAGGCTGTGGGGGAAG
CGGAAGCATCAAATTTTTCGCCTCCGGATCTGCTGCTCTTTCCCTCGCCG
GCATCGGCGGCATCGACGGTCCCTCCGCTGGCGCTGCCGCCTGTGGCCGC
CCTTTCGGTGCCGCGTGACACCACCATCGATGAGAAACCGCAAGTTCCCC
GAGACTTGCCATCGCCGCCGCCAATGCCACTGCAGCCACAGCAACAAGAC
CAACCTCGGCGGCCGTCGGCAAATGCTTCGCAGTCGCCGTTGCCGCCACC
GCCAGCGGGACAGGCAGGAGATCCAAAAGGAAACCGCAGCGGGGCAATCC
AGCCAAAGTCTGTCTTCCCGCGACGCGGCTCTGCCAAGGGCATCTTCTCT
CGCCTTGACGGCAGCGGCGGCGGCGGCGGCGGTGGCAGCAGCGGAGGGTT
TGCTGGGCTGACCAGCAGCGGGGGCTTCGGCGGCTTTGGCGGCGGAGGCG
GCAGCGGCGACGCCGATGGCAGCGGCAGCCTGGGCGAGAGCCTGAGTTCC
ATGAGCACGCAAATGTCGGCCGCCATGTCACCGCTGAAGCGGATCGGCGC
GGGCAACTCCTTTTTTGGCCGGCCAGGAGACGGCAAGGATGGGAAAGCGC
CCGACGGCAAGGACGGCAAAGACAAGGGCGGTAGTAGCGGCGGCGGCGGC
TTCGGCAGTGGCGGCGCTTTCGGCAACGCTTTTGGGGGCGGCGGCGGCAG
CAAGAAGGGCCCGCTCGGCAATTTCCGACCTTTCGGCGGTGGCGCCGGCG
GCAAGGGCAGTGGTGGCTTCGGCAGCCTTCTGTTGGACGACGACGACGAA
CCGCCGACGCCGGCGGAGAGCGCCGACGAGACCGAAGGAGGCAGAGCGCT
CTGAAAGGGCGGCGCGGCCCGCGGCGGCCGGCACGACTGCTCGTTGGAAC
GAGCGACGGAAGGTGGTCTGGAGTCGCTCGGAACAACAAAGAGGAAAGGG
AAGGGAGCGGGGCAGCCCTCAGTGCCCCTCCCTTTAGGAGTTAAGTGGCA
GGTTTGTGTGGTCAGTCTTGGTCGGGCCTTTACACAGGACCAAGGGCTTA
AATGTTCATTGACTTTTGGCCGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6273:2..1425-

>mRNA_P-wetherbeei_contig6273.1.1 ID=mRNA_P-wetherbeei_contig6273.1.1|Name=mRNA_P-wetherbeei_contig6273.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1194bp|location=Sequence derived from alignment at P-wetherbeei_contig6273:2..1425- (Phaeothamnion wetherbeei SAG_119_79)
ATGTACCGCGGGGAGGTGCAAGACATGGGCATGCCGCGGCCGGCCAGCCC
CGTCCGCAAAACAACGACGGCATCCGCCGCCTCGCCTGCCGCCAAGCCGC
TCTCCAGCGCCGTCAACGCGGTTTCGGCGGCTTCGGCATTTGCGGCGGCC
GGCGCGGCGGCGGTGGGAGCGGCTTCGGCTGCCGGGAACGGAGTGCAATC
GCTGCCGCCACCGTCGCAGACGCCACCGACGTCACAGGCGTCGTCGGTGG
GCGCGGCCAGAAGCGCCTTGTCAAACAACGTGAACAGTGGTGCTGCGAGG
GAGGGCGATGTTATCGATGCGCACGAGGCTGTGGGGGAAGCGGAAGCATC
AAATTTTTCGCCTCCGGATCTGCTGCTCTTTCCCTCGCCGGCATCGGCGG
CATCGACGGTCCCTCCGCTGGCGCTGCCGCCTGTGGCCGCCCTTTCGGTG
CCGCGTGACACCACCATCGATGAGAAACCGCAAGTTCCCCGAGACTTGCC
ATCGCCGCCGCCAATGCCACTGCAGCCACAGCAACAAGACCAACCTCGGC
GGCCGTCGGCAAATGCTTCGCAGTCGCCGTTGCCGCCACCGCCAGCGGGA
CAGGCAGGAGATCCAAAAGGAAACCGCAGCGGGGCAATCCAGCCAAAGTC
TGTCTTCCCGCGACGCGGCTCTGCCAAGGGCATCTTCTCTCGCCTTGACG
GCAGCGGCGGCGGCGGCGGCGGTGGCAGCAGCGGAGGGTTTGCTGGGCTG
ACCAGCAGCGGGGGCTTCGGCGGCTTTGGCGGCGGAGGCGGCAGCGGCGA
CGCCGATGGCAGCGGCAGCCTGGGCGAGAGCCTGAGTTCCATGAGCACGC
AAATGTCGGCCGCCATGTCACCGCTGAAGCGGATCGGCGCGGGCAACTCC
TTTTTTGGCCGGCCAGGAGACGGCAAGGATGGGAAAGCGCCCGACGGCAA
GGACGGCAAAGACAAGGGCGGTAGTAGCGGCGGCGGCGGCTTCGGCAGTG
GCGGCGCTTTCGGCAACGCTTTTGGGGGCGGCGGCGGCAGCAAGAAGGGC
CCGCTCGGCAATTTCCGACCTTTCGGCGGTGGCGCCGGCGGCAAGGGCAG
TGGTGGCTTCGGCAGCCTTCTGTTGGACGACGACGACGAACCGCCGACGC
CGGCGGAGAGCGCCGACGAGACCGAAGGAGGCAGAGCGCTCTGA
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