mRNA_P-wetherbeei_contig6260.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6260.2.1
Unique NamemRNA_P-wetherbeei_contig6260.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6260.2.1 vs. uniprot
Match: D8LL82_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL82_ECTSI)

HSP 1 Score: 109 bits (273), Expect = 2.600e-24
Identity = 105/230 (45.65%), Postives = 130/230 (56.52%), Query Frame = 1
Query:    1 LRLNTMNKVFPIMARAVNYLARVDRLTTSYPVWVPLAAWDDTVAKMTAPPGGGSLGSTAATAALVKVPAGFRAAKVACSAALTAVLAESGALYTFGFNRWGQCGLGHDNLH-VYGPHRVGPPVEHGGVWLDVALGLQHAVALAAGGTVWAWGKGERGQLGNGFLENHFLPERVHIGEPVTAVXXXXXXXXXXXXXXXXXXXXKMLSPEVKEHRRLVTIHHDQVRFRFTDI 687
            LR+N + ++FP +  A+N LA    +  S PV VPL A  +  A  TA     +L     +      P+  RA  VACSAALT VL E G +Y  G+NRWGQCG G DN+  V+ P RVG         + +A+G Q  + L   G V+ WGKG RGQLG G  E   LPE V +   V   XXXXXXXXXXXXXXXXXXXX M   EVK   R V ++HDQ+  R  D+
Sbjct:   95 LRINRIQRLFPFVVTAINALASSREVLPS-PVSVPLMA--EPAAASTASTVTAALHDARPSLHFPPTPSSLRAKSVACSAALTVVLGEDGKVYCMGYNRWGQCGQGPDNVFTVFEPLRVGGRALEREAVVKLAVGFQQVLVLCESGRVFGWGKGLRGQLGVGG-EMMELPEEVELPGKVVDXXXXXXXXXXXXXXXXXXXXXXMQGTEVKTDGR-VPVYHDQLYPRKVDV 319          
BLAST of mRNA_P-wetherbeei_contig6260.2.1 vs. uniprot
Match: A0A329RXQ5_9STRA (Uncharacterized protein n=6 Tax=Phytophthora TaxID=4783 RepID=A0A329RXQ5_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 9.450e-19
Identity = 49/99 (49.49%), Postives = 64/99 (64.65%), Query Frame = 1
Query:  187 ALVKVPAGFRAAKVACSAALTAVLAESGALYTFGFNRWGQCGLGHDNLHVYGPHRVGPPVEHGGVWLDVALGLQHAVALAAGGTVWAWGKGERGQLGNG 483
            AL+++P G R  K+ CS ALT +L ESG L+T G N +GQCG+G + + VY P  V      G   +D+A G QH +A+   GTV+ WGKGERGQLG G
Sbjct:  132 ALLELPEGERVKKIVCSTALTFLLTESGKLFTLGANSYGQCGIGEEGVSVYPPTHVN---IDGDEIVDIAAGYQHGLAVTKNGTVFTWGKGERGQLGFG 227          
BLAST of mRNA_P-wetherbeei_contig6260.2.1 vs. uniprot
Match: W2KYK1_PHYPR (Uncharacterized protein n=6 Tax=Phytophthora parasitica TaxID=4792 RepID=W2KYK1_PHYPR)

HSP 1 Score: 90.5 bits (223), Expect = 6.400e-18
Identity = 48/99 (48.48%), Postives = 64/99 (64.65%), Query Frame = 1
Query:  187 ALVKVPAGFRAAKVACSAALTAVLAESGALYTFGFNRWGQCGLGHDNLHVYGPHRVGPPVEHGGVWLDVALGLQHAVALAAGGTVWAWGKGERGQLGNG 483
            AL+++P G R  K+ CS ALT +L ESG L+T G N +GQCG+G + + V  P  V      G   +D+A G QH +A+   GTV++WGKGERGQLG G
Sbjct:  132 ALLELPDGERVKKIVCSTALTFLLTESGKLFTLGANGYGQCGIGEEGVSVQPPTHVN---IDGDEIVDIAAGYQHGLAVTKNGTVFSWGKGERGQLGFG 227          
BLAST of mRNA_P-wetherbeei_contig6260.2.1 vs. uniprot
Match: A0A2P4X3W3_9STRA (Regulator of chromosome condensation (RCC1)-like protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4X3W3_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 8.070e-18
Identity = 48/99 (48.48%), Postives = 63/99 (63.64%), Query Frame = 1
Query:  187 ALVKVPAGFRAAKVACSAALTAVLAESGALYTFGFNRWGQCGLGHDNLHVYGPHRVGPPVEHGGVWLDVALGLQHAVALAAGGTVWAWGKGERGQLGNG 483
            AL+++P G R  K+ CS ALT +L ESG L+T G N +GQCG+G + + V  P  V      G   +D+A G QH +A+   GTV+ WGKGERGQLG G
Sbjct:   27 ALLELPEGERVKKIVCSTALTFLLTESGKLFTLGANSYGQCGVGEEGVSVQPPTHVD---IDGDEIVDIAAGYQHGLAVTKNGTVFTWGKGERGQLGFG 122          
BLAST of mRNA_P-wetherbeei_contig6260.2.1 vs. uniprot
Match: A0A662X8L3_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X8L3_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 9.870e-18
Identity = 49/97 (50.52%), Postives = 63/97 (64.95%), Query Frame = 1
Query:  193 VKVPAGFRAAKVACSAALTAVLAESGALYTFGFNRWGQCGLGHDNLHVYGPHRVGPPVEHGGVWLDVALGLQHAVALAAGGTVWAWGKGERGQLGNG 483
            +++P G R  K+ CS ALT +L ESG ++T G N +GQCG+G + + V  P RV      G   +D+A G QH VAL A GTV+ WGKGERGQLG G
Sbjct:  123 LELPEGERVKKMVCSTALTFLLTESGKMFTLGANGYGQCGIGAEGVSVVPPTRVD---IDGDEIVDIAAGYQHGVALTADGTVFTWGKGERGQLGFG 216          
BLAST of mRNA_P-wetherbeei_contig6260.2.1 vs. uniprot
Match: A0A662WND7_9STRA (RING-type domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WND7_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 1.100e-17
Identity = 57/146 (39.04%), Postives = 78/146 (53.42%), Query Frame = 1
Query:  193 VKVPAGFRAAKVACSAALTAVLAESGALYTFGFNRWGQCGLGHDNLHVYGPHRVGPPVEHGGVWLDVALGLQHAVALAAGGTVWAWGKGERGQLGNGFLENHFLPERVHI-GEPVTAVXXXXXXXXXXXXXXXXXXXXKMLSPEVK 627
            +++P G R  K+ CS ALT +L ESG ++T G N +GQCG+G + + V  P RV      G   +D+A G QH VAL A GTV+ WGKGERGQLG G        E + + G+ V +V                    K+L+P+ K
Sbjct:  354 LELPEGERVKKMVCSTALTFLLTESGKMFTLGANGYGQCGIGAEGVSVVPPTRVN---IDGDEIVDIAAGYQHGVALTADGTVFTWGKGERGQLGFGTGNTDAPQELIALKGKKVASVSAGFNHSCAVTEDGELFVWGKLLNPKGK 496          
BLAST of mRNA_P-wetherbeei_contig6260.2.1 vs. uniprot
Match: A0A5D6XTS7_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XTS7_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 2.150e-17
Identity = 58/120 (48.33%), Postives = 71/120 (59.17%), Query Frame = 1
Query:  187 ALVKVPAGFRAAKVACSAALTAVLAESGALYTFGFNRWGQCGLGHDNLHVYGPHRVGPPVEHGGVWLDVALGLQHAVALAAGGTVWAWGKGERGQLGNGFLENHFLPERVHI-GEPVTAV 543
            A V +P G RA K+ CSAALT VLAESG L+ FG N +GQCG   + +    P RV      G   +DVA G QHA+A+   G V+AWGKGERGQLG G        E + + G+ V AV
Sbjct:  125 ARVALPEGERARKLVCSAALTLVLAESGRLFAFGANTFGQCGNDREGVSEPEPVRV---ALDGDDVVDVAAGYQHALAVTRSGAVFAWGKGERGQLGFGSANVKAPQELIALKGKAVAAV 241          
BLAST of mRNA_P-wetherbeei_contig6260.2.1 vs. uniprot
Match: A0A0W8D701_PHYNI (FAS-associated factor 2-B n=9 Tax=Phytophthora TaxID=4783 RepID=A0A0W8D701_PHYNI)

HSP 1 Score: 90.5 bits (223), Expect = 2.190e-17
Identity = 48/99 (48.48%), Postives = 64/99 (64.65%), Query Frame = 1
Query:  187 ALVKVPAGFRAAKVACSAALTAVLAESGALYTFGFNRWGQCGLGHDNLHVYGPHRVGPPVEHGGVWLDVALGLQHAVALAAGGTVWAWGKGERGQLGNG 483
            AL+++P G R  K+ CS ALT +L ESG L+T G N +GQCG+G + + V  P  V      G   +D+A G QH +A+   GTV++WGKGERGQLG G
Sbjct:  193 ALLELPDGERVKKIVCSTALTFLLTESGKLFTLGANGYGQCGIGEEGVSVQPPTHVN---IDGDEIVDIAAGYQHGLAVTKNGTVFSWGKGERGQLGFG 288          
BLAST of mRNA_P-wetherbeei_contig6260.2.1 vs. uniprot
Match: A0A0P1AMA9_PLAHL (FOG: RCC1 domain n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AMA9_PLAHL)

HSP 1 Score: 90.1 bits (222), Expect = 2.200e-17
Identity = 56/148 (37.84%), Postives = 78/148 (52.70%), Query Frame = 1
Query:  187 ALVKVPAGFRAAKVACSAALTAVLAESGALYTFGFNRWGQCGLGHDNLHVYGPHRVGPPVEHGGVWLDVALGLQHAVALAAGGTVWAWGKGERGQLGNGFLENHFLPERVHI-GEPVTAVXXXXXXXXXXXXXXXXXXXXKMLSPEVK 627
            AL+++P G R  K+ CS ALT +L ESG L+T G N +GQCG+G + + V  P  V      G   +D+A G QH +A+   GTV+ WGKGERGQLG G        E + + G+ +T V                    K+L+P+ K
Sbjct:  129 ALLELPDGERVKKIVCSTALTFLLTESGKLFTLGANSYGQCGIGEEGISVPLPTHVN---IDGDEVIDIAAGYQHGLAVTRNGTVFCWGKGERGQLGFGTGNADAPQELIALRGKKITKVSAGFNHSCAVSEDGELYLWGKLLNPKGK 273          
BLAST of mRNA_P-wetherbeei_contig6260.2.1 vs. uniprot
Match: G4YKE6_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YKE6_PHYSP)

HSP 1 Score: 89.0 bits (219), Expect = 5.660e-17
Identity = 47/99 (47.47%), Postives = 64/99 (64.65%), Query Frame = 1
Query:  187 ALVKVPAGFRAAKVACSAALTAVLAESGALYTFGFNRWGQCGLGHDNLHVYGPHRVGPPVEHGGVWLDVALGLQHAVALAAGGTVWAWGKGERGQLGNG 483
            AL+++P G +  K+ CS ALT +L ESG L+T G N +GQCG+G +++ V  P  V      G   +D+A G QH +A+   GTV+ WGKGERGQLG G
Sbjct:  129 ALLELPEGEKVKKIVCSTALTFLLTESGKLFTLGANGYGQCGVGEESVSVQPPTHVD---IDGDEIVDIAAGYQHGLAVTKNGTVFTWGKGERGQLGFG 224          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6260.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LL82_ECTSI2.600e-2445.65Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A329RXQ5_9STRA9.450e-1949.49Uncharacterized protein n=6 Tax=Phytophthora TaxID... [more]
W2KYK1_PHYPR6.400e-1848.48Uncharacterized protein n=6 Tax=Phytophthora paras... [more]
A0A2P4X3W3_9STRA8.070e-1848.48Regulator of chromosome condensation (RCC1)-like p... [more]
A0A662X8L3_9STRA9.870e-1850.52Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
A0A662WND7_9STRA1.100e-1739.04RING-type domain-containing protein n=1 Tax=Nothop... [more]
A0A5D6XTS7_9STRA2.150e-1748.33Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A0W8D701_PHYNI2.190e-1748.48FAS-associated factor 2-B n=9 Tax=Phytophthora Tax... [more]
A0A0P1AMA9_PLAHL2.200e-1737.84FOG: RCC1 domain n=1 Tax=Plasmopara halstedii TaxI... [more]
G4YKE6_PHYSP5.660e-1747.47Uncharacterized protein n=1 Tax=Phytophthora sojae... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6260contigP-wetherbeei_contig6260:1891..3396 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LL82
PFAMsRCC1,RCC1_2
Model size687
Max annot lvl2759|Eukaryota
KEGG koko:K19607
Hectar predicted targeting categoryother localisation
Exons4
Evalue2.4e-23
EggNOG OGsCOG5184@1|root,KOG1426@2759|Eukaryota
Ec32 ortholog descriptionRegulator of chromosome condensation, RCC1
Ec32 orthologEc-24_002600.1
Descriptionguanyl-nucleotide exchange factor activity
Cds size672
COG categoryDZ
BRITEko00000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186900.7286687-CDS-P-wetherbeei_contig6260:1890..20741683186900.7286687-CDS-P-wetherbeei_contig6260:1890..2074Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6260 1891..2074 -
1683186900.7392755-CDS-P-wetherbeei_contig6260:2431..25631683186900.7392755-CDS-P-wetherbeei_contig6260:2431..2563Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6260 2432..2563 -
1683186900.766323-CDS-P-wetherbeei_contig6260:2812..30751683186900.766323-CDS-P-wetherbeei_contig6260:2812..3075Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6260 2813..3075 -
1683186900.7814841-CDS-P-wetherbeei_contig6260:3288..33811683186900.7814841-CDS-P-wetherbeei_contig6260:3288..3381Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6260 3289..3381 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186900.7943609-UTR-P-wetherbeei_contig6260:3381..33961683186900.7943609-UTR-P-wetherbeei_contig6260:3381..3396Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6260 3382..3396 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6260.2.1prot_P-wetherbeei_contig6260.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6260 1891..3381 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6260.2.1

>prot_P-wetherbeei_contig6260.2.1 ID=prot_P-wetherbeei_contig6260.2.1|Name=mRNA_P-wetherbeei_contig6260.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=224bp
MNKVFPIMARAVNYLARVDRLTTSYPVWVPLAAWDDTVAKMTAPPGGGSL
GSTAATAALVKVPAGFRAAKVACSAALTAVLAESGALYTFGFNRWGQCGL
GHDNLHVYGPHRVGPPVEHGGVWLDVALGLQHAVALAAGGTVWAWGKGER
GQLGNGFLENHFLPERVHIGEPVTAVAAGFSHGAALAASGRVYLWGKMLS
PEVKEHRRLVTIHHDQVRFRFTDI
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mRNA from alignment at P-wetherbeei_contig6260:1891..3396-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6260.2.1 ID=mRNA_P-wetherbeei_contig6260.2.1|Name=mRNA_P-wetherbeei_contig6260.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1506bp|location=Sequence derived from alignment at P-wetherbeei_contig6260:1891..3396- (Phaeothamnion wetherbeei SAG_119_79)
CTGCGCCTGAACACCATGAACAAGGTGTTCCCGATAATGGCGCGGGCGGT CAACTACTTGGCCCGCGTCGACCGCCTTACCACCAGCTACCCCGTGTGGG TTCCGCTCGTCCCGTGGGGCTCCGGCCACCGACTGCCTGCTGGCACCGGA TCCGCAGCGTGTCCGTTGACGACGGACGGATCGAACAGCGCCGAAACGCG AGCGGCGGAACTGGCGCTAAAACTCGCAGCTAGCGACCTGGATGCCTACA CCGCGCTCTCAATACAGCGGCAGATGACAGCGACGGACCCTGCCGTAAGA GGCGTGGCGGTGGTGAACGAGGCCGCGTGGGACGACACCGTTGCGAAAAT GACGGCGCCGCCGGGCGGCGGCAGCTTGGGTTCTACCGCTGCAACTGCTG CGCTCGTCAAAGTGCCGGCGGGCTTCCGCGCAGCCAAAGTGGCCTGCAGC GCGGCGCTGACGGCGGTGCTGGCAGAGAGCGGCGCGCTCTATACGTTCGG CTTCAACCGCTGGGGCCAGTGCGGCCTCGGCCACGACAATTTGCACGTCT ACGGCCCGCACCGGGTGGGGCCGCCCGTCGAGCAGTGCGGCAGCAGTAGC AGCTACGGTTCGGTGGCATTGGCGCTCGGCGACGGCGGCGGCGGCGGCGG CGGCAGCGGCAGCGGCAGCAGCGGAAGAGGCAGCGACGCAGCGAGCGGAC AGCTTGCGATGGACGACGGTGCTGTGGTGGCGGCAGCGGCGGTGGGAACA CGAAACGGGAGAGAAGTCGGGCAGCAGGCGCCGGAGAAGCGGGGCCCGTC ATCGGCGGCGATAGCATCGGACGCCGACACGAGCGGCGGTGTGTGGCTGG ACGTGGCGCTGGGGCTGCAGCATGCCGTGGCGCTGGCGGCGGGCGGCACC GTTTGGGCGTGGGGCAAGGGCGAGCGGGGCCAGCTCGGGAATGGCTTCCT CGAGAATCACTTCCTGTAAGTTCGGCTGCTCCTTCGCTTTGTTCTCGGCT TTTTGTCGGTAAGGGTGGGATTGATGGGGGAATTAATGCTTTATGTTGTG CCACCTTTATCAAGCTCTGCAGCTTTGCCGTTTTTGCAGCCGGCTTGGAA TGGGCTAATTGGGAAGGGCTGCAATGGCTGCGCCTGACCGAATGTAGCAA GATGTTTCTTGAAGCGGCTGCACGCTCTTCTTCGGCAATCCACACGCCTT GCGTTCTTCGCTAAAATCTTCCTGATAGCATGCGTAGGGATACTCTTTGC GTTCACATGCTCTTGACTTATATTTCAAACGTCGGCTGCCTGGCCTTGCC TTGCCTTCTCCTCCTCCTGCAGCCCAGAGCGCGTGCACATTGGTGAGCCG GTGACGGCGGTGGCGGCGGGCTTCTCGCACGGGGCAGCGCTGGCGGCGTC GGGGCGGGTGTATCTTTGGGGAAAGATGCTGTCGCCGGAGGTCAAAGAGC ATCGCCGCCTTGTCACCATCCACCACGACCAGGTGCGATTTCGGTTTACT GACATC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6260:1891..3396-

>mRNA_P-wetherbeei_contig6260.2.1 ID=mRNA_P-wetherbeei_contig6260.2.1|Name=mRNA_P-wetherbeei_contig6260.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=672bp|location=Sequence derived from alignment at P-wetherbeei_contig6260:1891..3396- (Phaeothamnion wetherbeei SAG_119_79)
ATGAACAAGGTGTTCCCGATAATGGCGCGGGCGGTCAACTACTTGGCCCG
CGTCGACCGCCTTACCACCAGCTACCCCGTGTGGGTTCCGCTCGCCGCGT
GGGACGACACCGTTGCGAAAATGACGGCGCCGCCGGGCGGCGGCAGCTTG
GGTTCTACCGCTGCAACTGCTGCGCTCGTCAAAGTGCCGGCGGGCTTCCG
CGCAGCCAAAGTGGCCTGCAGCGCGGCGCTGACGGCGGTGCTGGCAGAGA
GCGGCGCGCTCTATACGTTCGGCTTCAACCGCTGGGGCCAGTGCGGCCTC
GGCCACGACAATTTGCACGTCTACGGCCCGCACCGGGTGGGGCCGCCCGT
CGAGCACGGCGGTGTGTGGCTGGACGTGGCGCTGGGGCTGCAGCATGCCG
TGGCGCTGGCGGCGGGCGGCACCGTTTGGGCGTGGGGCAAGGGCGAGCGG
GGCCAGCTCGGGAATGGCTTCCTCGAGAATCACTTCCTCCCAGAGCGCGT
GCACATTGGTGAGCCGGTGACGGCGGTGGCGGCGGGCTTCTCGCACGGGG
CAGCGCTGGCGGCGTCGGGGCGGGTGTATCTTTGGGGAAAGATGCTGTCG
CCGGAGGTCAAAGAGCATCGCCGCCTTGTCACCATCCACCACGACCAGGT
GCGATTTCGGTTTACTGACATC
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