mRNA_P-wetherbeei_contig626.5.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig626.5.1
Unique NamemRNA_P-wetherbeei_contig626.5.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig626.5.1 vs. uniprot
Match: A0A6G0WJQ4_9STRA (H/ACA ribonucleoprotein complex non-core subunit NAF1 n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WJQ4_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 1.020e-9
Identity = 37/92 (40.22%), Postives = 54/92 (58.70%), Query Frame = 1
Query:  172 RALGVVTEIFGPVTCPCYVVHVGSLNEVPRHVQIGSIAYVVKEMPNEVLDGSCFERGRGCDASNAFDEEAGDNEADFSDDEKEQLAKKTKGK 447
            + LG V E+FGPV+ P Y++   +  ++P    + +  +   E    V    C  R +G DASN +DEE GD+E +FSDDE EQ AK++K K
Sbjct:  179 QVLGCVDEVFGPVSLPLYLIRFETAEDIPEAATLHADVFYATEHATYVQPEKC--RVKGSDASNLYDEEPGDDEMEFSDDEAEQSAKRSKRK 268          
BLAST of mRNA_P-wetherbeei_contig626.5.1 vs. uniprot
Match: A0A163LTT2_ABSGL (H/ACA ribonucleoprotein complex non-core subunit NAF1 n=1 Tax=Absidia glauca TaxID=4829 RepID=A0A163LTT2_ABSGL)

HSP 1 Score: 64.7 bits (156), Expect = 9.330e-9
Identity = 38/89 (42.70%), Postives = 54/89 (60.67%), Query Frame = 1
Query:  178 LGVVTEIFGPVTCPCYVVHVGSLNEVPRHVQIGS-IAYVVKEMPNEVLDGSCFERGRGCDASNAFDEEAGDNEADFSDDEKEQLAKKTK 441
            LG V E FGPV  P Y V   S++E+P   + G+ +AYV      +++     +  +G DASN FDEEAGD+E +FSDDE+E    ++K
Sbjct:  162 LGEVFETFGPVDRPFYSVRFNSMDEIPSAAKSGARVAYVPSYARTQLVQVEKLKLLKGTDASNRFDEEAGDDELEFSDDEQEMAYNRSK 250          
BLAST of mRNA_P-wetherbeei_contig626.5.1 vs. uniprot
Match: A0A0B7N6G5_9FUNG (H/ACA ribonucleoprotein complex non-core subunit NAF1 n=1 Tax=Parasitella parasitica TaxID=35722 RepID=A0A0B7N6G5_9FUNG)

HSP 1 Score: 62.4 bits (150), Expect = 5.900e-8
Identity = 35/90 (38.89%), Postives = 51/90 (56.67%), Query Frame = 1
Query:  172 RALGVVTEIFGPVTCPCYVVHVGSLNEVPRHV-QIGSIAYVVKE-MPNEVLDGSCFERGRGCDASNAFDEEAGDNEADFSDDEKEQLAKK 435
            + LG V E FGPV CP Y V      E+ + + ++G   Y V      ++++     + +G DASN +DEE G++E +FSDDEKE   KK
Sbjct:  197 QVLGEVFETFGPVACPYYSVRFNDAKEIDKELAKVGQEVYFVPSYQKTQIVETEKLRKMKGTDASNVYDEEIGEDEMEFSDDEKEMEYKK 286          
BLAST of mRNA_P-wetherbeei_contig626.5.1 vs. uniprot
Match: A0A5J4Z561_PORPP (H/ACA ribonucleoprotein complex non-core subunit NAF1 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z561_PORPP)

HSP 1 Score: 62.0 bits (149), Expect = 8.360e-8
Identity = 39/90 (43.33%), Postives = 51/90 (56.67%), Query Frame = 1
Query:  175 ALGVVTEIFGPVTCPCYVVHVGSLNEVPRH-VQIGSIAYVVKEMPNEVLDGSCFERGRGCDASNAFDEEAGDNEADFSDDEKEQLAKKTK 441
            A+G V E FGPV  P Y +   S  ++ +  V +G   Y+V E+   VL  S   R RGCDASN +DEE    + +FSDDE E  A +TK
Sbjct:  276 AIGKVFETFGPVARPYYSLRFASAEQIQKKGVAVGCAVYLVPELSRFVLPDSI--RTRGCDASNFYDEEIDAEQLEFSDDEAESAALRTK 363          
BLAST of mRNA_P-wetherbeei_contig626.5.1 vs. uniprot
Match: A0A418FHY6_9STRA (H/ACA ribonucleoprotein complex subunit (Fragment) n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418FHY6_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 1.150e-7
Identity = 36/90 (40.00%), Postives = 52/90 (57.78%), Query Frame = 1
Query:  178 LGVVTEIFGPVTCPCYVVHVGSLNEVPRHVQIGSIAYVVKEMPNEVLDGSCFERGRGCDASNAFDEEAGDNEADFSDDEKEQLAKKTKGK 447
            LG+V E+FGPV+ P Y++   + +E+P    + +      E    V    C  R +G DASN +DEE   +E ++SDDE EQ AKK+K K
Sbjct:  173 LGLVDEVFGPVSLPLYLIRFETADEIPAGAILHADVLYASEHATYVQADKC--RIKGSDASNLYDEEPAADEMEYSDDEAEQSAKKSKRK 260          
BLAST of mRNA_P-wetherbeei_contig626.5.1 vs. uniprot
Match: A0A1R3J116_COCAP (H/ACA ribonucleoprotein complex non-core subunit NAF1 n=1 Tax=Corchorus capsularis TaxID=210143 RepID=A0A1R3J116_COCAP)

HSP 1 Score: 61.2 bits (147), Expect = 1.480e-7
Identity = 42/81 (51.85%), Postives = 49/81 (60.49%), Query Frame = 1
Query:  178 LGVVTEIFGPVTCPCYVVHVGSLNEVPRHVQIGSIAYVVKEMPNEVLDGSCFERGRGCDASNAFDEEAGDNEADFSDDEKE 420
            LG+V EIFGPVT P YVV   S  EVP  +Q G+    V E  N VL+ S   + +G DAS   DEE  D  A+FSDDEKE
Sbjct:  173 LGLVDEIFGPVTNPYYVVRYDSEIEVPAGIQEGTSISFVPEFANHVLNDSNLYK-KGYDASGENDEELSD-PAEFSDDEKE 251          
BLAST of mRNA_P-wetherbeei_contig626.5.1 vs. uniprot
Match: A0A1R3KFH5_9ROSI (H/ACA ribonucleoprotein complex non-core subunit NAF1 n=1 Tax=Corchorus olitorius TaxID=93759 RepID=A0A1R3KFH5_9ROSI)

HSP 1 Score: 61.2 bits (147), Expect = 1.530e-7
Identity = 42/81 (51.85%), Postives = 49/81 (60.49%), Query Frame = 1
Query:  178 LGVVTEIFGPVTCPCYVVHVGSLNEVPRHVQIGSIAYVVKEMPNEVLDGSCFERGRGCDASNAFDEEAGDNEADFSDDEKE 420
            LG+V EIFGPVT P YVV   S  EVP  +Q G+    V E  N VL+ S   + +G DAS   DEE  D  A+FSDDEKE
Sbjct:  187 LGLVDEIFGPVTNPYYVVRYDSEIEVPAGIQEGTSISFVPEFANHVLNDSNLYK-KGYDASGENDEELSD-PAEFSDDEKE 265          
BLAST of mRNA_P-wetherbeei_contig626.5.1 vs. uniprot
Match: A0A1R3K746_COCAP (H/ACA ribonucleoprotein complex non-core subunit NAF1 n=2 Tax=Corchorus TaxID=93758 RepID=A0A1R3K746_COCAP)

HSP 1 Score: 59.3 bits (142), Expect = 7.180e-7
Identity = 42/86 (48.84%), Postives = 50/86 (58.14%), Query Frame = 1
Query:  178 LGVVTEIFGPVTCPCYVVHVGSLNEVPRHVQIGSIAYVVKEMPNEVLDGSCFERGRGCDASNAFDEEAGDNEADFSDDEKEQLAKK 435
            LG+V EIFGPVT P YVV   S  EVP  +  G+    V E  N VL+ +   + +G DAS   DEE  D  A+FSDDEKE   KK
Sbjct:  310 LGLVDEIFGPVTNPYYVVRYNSEIEVPAGIHEGTSISFVPEFANHVLNDNNLYK-KGYDASGENDEELSDY-AEFSDDEKEAEYKK 393          
BLAST of mRNA_P-wetherbeei_contig626.5.1 vs. uniprot
Match: A0A8H7QZE5_9FUNG (H/ACA ribonucleoprotein complex non-core subunit NAF1 n=1 Tax=Mucor saturninus TaxID=64648 RepID=A0A8H7QZE5_9FUNG)

HSP 1 Score: 58.9 bits (141), Expect = 8.510e-7
Identity = 36/96 (37.50%), Postives = 52/96 (54.17%), Query Frame = 1
Query:  178 LGVVTEIFGPVTCPCYVVHVGSLNEVPRHV-QIG-SIAYVVKEMPNEVLDGSCFERGRGCDASNAFDEEAGDNEADFSDDEKEQLAKKTKGKGKVL 459
            +G V E FGPV  P Y V      E+     +IG S+ YV      ++++     + +G DASN +DEE G+ E +FSDDEKE   KK + + K +
Sbjct:  176 MGEVFETFGPVARPYYSVRFNDAKEINEEFGKIGASVYYVPTYQKTQIVETEALRKIKGTDASNVYDEEVGEEEMEFSDDEKEMQFKKKRNREKKM 271          
BLAST of mRNA_P-wetherbeei_contig626.5.1 vs. uniprot
Match: A0A2Z6RMM8_9GLOM (H/ACA ribonucleoprotein complex subunit n=2 Tax=Rhizophagus clarus TaxID=94130 RepID=A0A2Z6RMM8_9GLOM)

HSP 1 Score: 58.2 bits (139), Expect = 9.540e-7
Identity = 38/83 (45.78%), Postives = 46/83 (55.42%), Query Frame = 1
Query:  178 LGVVTEIFGPVTCPCYVVHVGSLNEVPRHVQIGSIA-YVVKEMPNEVLDGSCFERGRGCDASNAFDEEAGDNEADFSDDEKEQ 423
            LG + E  GPV  P YVV     NE+ +   I     + V E+   V     FE  +GCDASNAFDEE  + E +FSDDEKEQ
Sbjct:  122 LGEIFETIGPVAHPMYVVR---FNEIDKEKVIKDAKIFSVDELSKFVFTREIFEH-KGCDASNAFDEEVNEEEIEFSDDEKEQ 200          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig626.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
A0A6G0WJQ4_9STRA1.020e-940.22H/ACA ribonucleoprotein complex non-core subunit N... [more]
A0A163LTT2_ABSGL9.330e-942.70H/ACA ribonucleoprotein complex non-core subunit N... [more]
A0A0B7N6G5_9FUNG5.900e-838.89H/ACA ribonucleoprotein complex non-core subunit N... [more]
A0A5J4Z561_PORPP8.360e-843.33H/ACA ribonucleoprotein complex non-core subunit N... [more]
A0A418FHY6_9STRA1.150e-740.00H/ACA ribonucleoprotein complex subunit (Fragment)... [more]
A0A1R3J116_COCAP1.480e-751.85H/ACA ribonucleoprotein complex non-core subunit N... [more]
A0A1R3KFH5_9ROSI1.530e-751.85H/ACA ribonucleoprotein complex non-core subunit N... [more]
A0A1R3K746_COCAP7.180e-748.84H/ACA ribonucleoprotein complex non-core subunit N... [more]
A0A8H7QZE5_9FUNG8.510e-737.50H/ACA ribonucleoprotein complex non-core subunit N... [more]
A0A2Z6RMM8_9GLOM9.540e-745.78H/ACA ribonucleoprotein complex subunit n=2 Tax=Rh... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig626contigP-wetherbeei_contig626:8749..9348 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog3827.XP_004487320.1
PFAMsGar1
Model size601
Max annot lvl35493|Streptophyta
KEGG koko:K14763
Hectar predicted targeting categoryother localisation
GOsGO:0000154,GO:0000454,GO:0000491,GO:0000493,GO:0001522,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005732,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009451,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010605,GO:0010608,GO:0010638,GO:0016043,GO:0016070,GO:0016072,GO:0016074,GO:0019219,GO:0019222,GO:0022607,GO:0022613,GO:0022618,GO:0031118,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031330,GO:0032204,GO:0032206,GO:0032210,GO:0032212,GO:0032991,GO:0033043,GO:0033044,GO:0034470,GO:0034622,GO:0034641,GO:0034660,GO:0042254,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043487,GO:0043489,GO:0043933,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0045934,GO:0045935,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050790,GO:0050794,GO:0051052,GO:0051054,GO:0051128,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051252,GO:0051253,GO:0051338,GO:0051347,GO:0051972,GO:0051973,GO:0060255,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070034,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0090669,GO:0097159,GO:1901360,GO:1901363,GO:1902369,GO:1904356,GO:1904358,GO:1905323,GO:1990904,GO:2000112,GO:2000278,GO:2000573,GO:2001252
Exons1
Evalue1.41e-10
EggNOG OGsKOG2236@1|root,KOG2236@2759|Eukaryota,37MW1@33090|Viridiplantae,3GF5W@35493|Streptophyta,4JF3Z@91835|fabids
DescriptionH ACA ribonucleoprotein complex non-core subunit
Cds size600
COG categoryJ
BRITEko00000,ko03009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186900.6935544-CDS-P-wetherbeei_contig626:8748..93481683186900.6935544-CDS-P-wetherbeei_contig626:8748..9348Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig626 8749..9348 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig626.5.1prot_P-wetherbeei_contig626.5.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig626 8749..9348 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig626.5.1

>prot_P-wetherbeei_contig626.5.1 ID=prot_P-wetherbeei_contig626.5.1|Name=mRNA_P-wetherbeei_contig626.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=200bp
CGAGGAAAAAVAAKAKKNPKRSDGGDGCEFSDEYDDDEEVDSDEDREPTK
LYDPLWPRALGVVTEIFGPVTCPCYVVHVGSLNEVPRHVQIGSIAYVVKE
MPNEVLDGSCFERGRGCDASNAFDEEAGDNEADFSDDEKEQLAKKTKGKG
KVLFGVLVGEAGAKGFGPARPNGGFAANGGGAGGSGSGSGAGGGNSSGNG
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mRNA from alignment at P-wetherbeei_contig626:8749..9348+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig626.5.1 ID=mRNA_P-wetherbeei_contig626.5.1|Name=mRNA_P-wetherbeei_contig626.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=600bp|location=Sequence derived from alignment at P-wetherbeei_contig626:8749..9348+ (Phaeothamnion wetherbeei SAG_119_79)
TGCGGGGCCGGAGGCGCCGCCGCCGCCGCGGTCGCCGCCAAGGCCAAGAA GAACCCGAAGCGCAGCGACGGCGGTGACGGCTGTGAGTTCTCAGACGAGT ACGACGACGACGAAGAGGTCGACAGCGACGAGGACCGGGAGCCGACAAAA TTGTACGACCCGCTGTGGCCGCGGGCACTCGGCGTCGTGACTGAAATCTT CGGACCCGTCACCTGCCCGTGCTATGTCGTGCATGTCGGCAGCCTGAACG AGGTGCCGCGCCACGTCCAGATCGGCTCGATCGCCTACGTCGTGAAGGAG ATGCCGAACGAGGTGCTGGATGGGTCCTGCTTCGAGCGCGGCCGCGGCTG CGACGCCTCCAATGCGTTCGACGAGGAGGCTGGCGACAACGAGGCGGACT TTTCGGACGATGAGAAGGAGCAGCTGGCCAAGAAGACCAAGGGCAAAGGC AAAGTTTTGTTTGGGGTGTTGGTGGGGGAGGCCGGCGCCAAGGGTTTTGG CCCCGCTAGGCCCAATGGCGGCTTTGCTGCCAATGGCGGTGGCGCCGGTG GCAGTGGCAGCGGCAGCGGTGCAGGCGGCGGCAACAGCAGCGGCAACGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig626:8749..9348+

>mRNA_P-wetherbeei_contig626.5.1 ID=mRNA_P-wetherbeei_contig626.5.1|Name=mRNA_P-wetherbeei_contig626.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=600bp|location=Sequence derived from alignment at P-wetherbeei_contig626:8749..9348+ (Phaeothamnion wetherbeei SAG_119_79)
TGCGGGGCCGGAGGCGCCGCCGCCGCCGCGGTCGCCGCCAAGGCCAAGAA
GAACCCGAAGCGCAGCGACGGCGGTGACGGCTGTGAGTTCTCAGACGAGT
ACGACGACGACGAAGAGGTCGACAGCGACGAGGACCGGGAGCCGACAAAA
TTGTACGACCCGCTGTGGCCGCGGGCACTCGGCGTCGTGACTGAAATCTT
CGGACCCGTCACCTGCCCGTGCTATGTCGTGCATGTCGGCAGCCTGAACG
AGGTGCCGCGCCACGTCCAGATCGGCTCGATCGCCTACGTCGTGAAGGAG
ATGCCGAACGAGGTGCTGGATGGGTCCTGCTTCGAGCGCGGCCGCGGCTG
CGACGCCTCCAATGCGTTCGACGAGGAGGCTGGCGACAACGAGGCGGACT
TTTCGGACGATGAGAAGGAGCAGCTGGCCAAGAAGACCAAGGGCAAAGGC
AAAGTTTTGTTTGGGGTGTTGGTGGGGGAGGCCGGCGCCAAGGGTTTTGG
CCCCGCTAGGCCCAATGGCGGCTTTGCTGCCAATGGCGGTGGCGCCGGTG
GCAGTGGCAGCGGCAGCGGTGCAGGCGGCGGCAACAGCAGCGGCAACGGC
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