mRNA_P-wetherbeei_contig626.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig626.4.1
Unique NamemRNA_P-wetherbeei_contig626.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig626.4.1 vs. uniprot
Match: A0A835Z5C1_9STRA (MOSC domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5C1_9STRA)

HSP 1 Score: 257 bits (656), Expect = 1.530e-81
Identity = 129/244 (52.87%), Postives = 166/244 (68.03%), Query Frame = 1
Query:    1 VAALHIYPVKSCAGHSVSKAELTTTGFRYDRLWMVLNSSNRFVTQRRLPKMAHVRPSLPKADDEPLMLTAPGMNDISVPVLRAKDKGAKILEV--WSSTCDGVDQGDAVAAWLTSFLGGGSGDGEAYRLVRMDEAFRRPVDPDFGGRGHFVSFADGFPMLWASQESLEEVNRRLGEPIPMNRFRPNVVVTGSGPFCEDEWTEMRVNGIIMRPVKPCSRCKIPTIDQKT-LATSNEPTETLRTFR 723
            V +L +YP+KSCAGH V   ELT TG +YDR W+V+ +  RF +QRRLPKMA + PSLP +D +PL++ APGM ++ VP  R  D GAK + V  W   C G+DQG+  A WL+  LG         RL+R D+AF R  DP +G RG F +++DGFP+L AS+ESLE++N RL +PI M RFRPNVVV G G + ED WT++ V  ++MR VKPC RC++PTIDQ T   T  EPT TLR FR
Sbjct:   60 VTSLRVYPIKSCAGHEVDCWELTKTGLKYDRNWVVVGADGRFRSQRRLPKMAVITPSLPTSDTDPLIIKAPGMPELVVPARRRGDPGAKEVPVGVWGDQCTGIDQGEETATWLSRCLGE-----PGLRLLRYDDAFTRGTDPAYG-RGFFTAYSDGFPLLLASEESLEDLNARLAQPIGMERFRPNVVVEGMGAWAEDAWTKVAVGDVVMRVVKPCDRCQVPTIDQSTGTKTGAEPTATLRAFR 297          
BLAST of mRNA_P-wetherbeei_contig626.4.1 vs. uniprot
Match: D8LMR0_ECTSI (MOSC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMR0_ECTSI)

HSP 1 Score: 243 bits (619), Expect = 6.040e-76
Identity = 128/255 (50.20%), Postives = 166/255 (65.10%), Query Frame = 1
Query:    1 VAALHIYPVKSCAGHSVSKAELTTTGFRYDRLWMVLNSSNRFVTQRRLPKMAHVRPSLPKADDEPLMLTAPGMNDISVPVLR-----AKDKGAKILEV--WSSTCDGVDQGDAVAAWLTSFLGGGSGDGEAYRLVRMDEAFRRPVDPDFGGRGHFVSFADGFPMLWASQESLEEVNRRL-----GEP--IPMNRFRPNVVVTGSGPFCEDEWTEMRVNGIIMRPVKPCSRCKIPTIDQKTLATSNEPTETLRTFR 723
            + +L +YPVKSCAGH V +A L   G   DR WM+++   RF++QRR  K+A + PSLPK  DEPL+L+APG+  + VPV+R         G +++EV  W  TC  +DQGDA A+WL +FLG      +  RLVRM + F RP DP +G  G    FADGFPML  ++ESLEE+N R+     GE   + M+RFRPN+VV G GPF ED+WT++RV  I MR  KPCSRC+IP I+Q TL    EP +TL TFR
Sbjct:   59 ITSLRVYPVKSCAGHEVQQASLGDRGLEMDRQWMIVDGRGRFMSQRRFSKLALISPSLPKTKDEPLVLSAPGVASLEVPVVRKVGAGGPAAGGELVEVGVWKDTCQAIDQGDAAASWLQAFLGV-----DNLRLVRMKDGFVRPTDPGYG-TGFRTGFADGFPMLLVAEESLEELNSRIAATGDGEQAAVGMDRFRPNIVVRGWGPFAEDDWTKIRVGRIGMRTPKPCSRCQIPGINQSTLEVRKEPRQTLDTFR 307          
BLAST of mRNA_P-wetherbeei_contig626.4.1 vs. uniprot
Match: A0A7S2W2F0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W2F0_9STRA)

HSP 1 Score: 234 bits (597), Expect = 7.810e-73
Identity = 118/239 (49.37%), Postives = 160/239 (66.95%), Query Frame = 1
Query:   16 IYPVKSCAGHSVSKAELTTTGFRYDRLWMVLNSSNRFVTQRRLPKMAHVRPSLPKADDEPLMLTAPGMNDISVPVLRAKDKGAKILEVWSSTCDGVDQGDAVAAWLTSFLGGGSGDGEAYRLVRMDEAFRRPVDPDFGGRGHFVSFADGFPMLWASQESLEEVNRRLGEP---IPMNRFRPNVVVTGSGPFCEDEWTEMRVNGIIMRPVKPCSRCKIPTIDQKTLATSNEPTETLRTFR 723
            +YPVKSCAG +V++  +T TG ++DR WMV++++  F++QR  P+MA ++P LP    + L+LTAPGM  + VPV R        + VWS+   GVDQGD  A WL+SFL       +  RLVR  + + R  DP+F  +G+  +++DGFP+L AS+ESL E+NRR+G+    IPMNRFRPNVV+ G GPFCED WT++    + M  VKPC+RCKIPT DQ T   S EPT TL+ FR
Sbjct:   61 VYPVKSCAGTAVTRHAVTRTGLQFDREWMVVDATGNFMSQRVAPRMALIQPQLPAKRGDDLVLTAPGMEPLRVPVRRGWFVPRVRVTVWSTPYRGVDQGDVAAKWLSSFL-----QRDGLRLVRFPDGYIRETDPEFA-KGYRTAYSDGFPLLVASEESLGELNRRMGKSKPDIPMNRFRPNVVLKGGGPFCEDNWTKIHCGDLSMLIVKPCTRCKIPTTDQATAEVSEEPTATLKKFR 293          
BLAST of mRNA_P-wetherbeei_contig626.4.1 vs. uniprot
Match: A0A4D9D946_9STRA (MOSC domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D946_9STRA)

HSP 1 Score: 229 bits (584), Expect = 3.390e-71
Identity = 118/242 (48.76%), Postives = 153/242 (63.22%), Query Frame = 1
Query:    1 VAALHIYPVKSCAGHSVSKAELTTTGFRYDRLWMVLNSSNRFVTQRRLPKMAHVRPSLPKADDEPLMLTAPGMNDISVPVLRAKDKGAKI-LEVWSSTCDGVDQGDAVAAWLTSFLGGGSGDGEAYRLVRMDEAFRRPVDPDFGGRGHFVSFADGFPMLWASQESLEEVNRRLGEPIPMNRFRPNVVVTGSGPFCEDEWTEMRVNGIIMRPVKPCSRCKIPTIDQKTLATSNEPTETLRTFR 723
            V +LHIYPVKSC G  V  + + + G   DRLWMV+ S+  F +QR+LPKMA ++P+LP +   PL + APGM    VPV   K  G ++ + VW  TC G DQGD +A WLT FL     + E  RLVR+DE  RR VD  F  RG    FADGFP L  +Q SL+++N RL  P+PM RFRPN+VV+G   F ED W ++++  + +R VKPCSRCK+P  D +T     EP  TL+TFR
Sbjct:   42 VVSLHIYPVKSCRGIDVQASLVESRGLVMDRLWMVVTSTGAFRSQRQLPKMALIQPNLPSSFSAPLEMNAPGMPTCVVPV---KTSGKRMGVRVWGDTCQGYDQGDDIAGWLTKFL-----EEEGLRLVRIDEKERRQVDLAFATRGAITGFADGFPFLMTNQASLDDLNSRLASPLPMARFRPNIVVSGPPAFAEDGWGKIKIGDLRLRVVKPCSRCKVPNTDIETAEVGVEPGNTLKTFR 275          
BLAST of mRNA_P-wetherbeei_contig626.4.1 vs. uniprot
Match: W7TSW3_9STRA (Proliferation-associated protein 2g4 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TSW3_9STRA)

HSP 1 Score: 229 bits (583), Expect = 1.480e-66
Identity = 118/242 (48.76%), Postives = 152/242 (62.81%), Query Frame = 1
Query:    1 VAALHIYPVKSCAGHSVSKAELTTTGFRYDRLWMVLNSSNRFVTQRRLPKMAHVRPSLPKADDEPLMLTAPGMNDISVPVLRAKDKGAKI-LEVWSSTCDGVDQGDAVAAWLTSFLGGGSGDGEAYRLVRMDEAFRRPVDPDFGGRGHFVSFADGFPMLWASQESLEEVNRRLGEPIPMNRFRPNVVVTGSGPFCEDEWTEMRVNGIIMRPVKPCSRCKIPTIDQKTLATSNEPTETLRTFR 723
            V +LHIYPVKSC G  V  + +   G   DRLWMV+ S+  F +QR+LPKMA ++P+LP +   PL + APGM    VPV   K  G ++ + VW  TC G DQGD +A WLT FL     + E  RLVR+DE  RR VD  F  RG    FADGFP L  +Q SL+++N RL  P+PM RFRPN+VV+G   F ED W ++++  + +R VKPCSRCK+P  D +T     EP  TL+TFR
Sbjct:  513 VVSLHIYPVKSCRGIDVEASLVEARGLVMDRLWMVVTSTGAFRSQRQLPKMALIQPNLPSSFSAPLEMNAPGMPTCVVPV---KTSGKRMSVRVWGDTCQGYDQGDDIAGWLTKFL-----EEEGLRLVRIDEKERRQVDLAFATRGAITGFADGFPFLMTNQASLDDLNSRLASPLPMARFRPNIVVSGPPAFAEDGWGKIKIGDLRLRVVKPCSRCKVPNTDIETAEVGVEPGNTLKTFR 746          
BLAST of mRNA_P-wetherbeei_contig626.4.1 vs. uniprot
Match: A0A6J4VB52_9CHLR (Flavodoxin reductases (Ferredoxin-NADPH reductases) family 1 n=1 Tax=uncultured Thermomicrobiales bacterium TaxID=1645740 RepID=A0A6J4VB52_9CHLR)

HSP 1 Score: 213 bits (543), Expect = 2.050e-65
Identity = 117/244 (47.95%), Postives = 157/244 (64.34%), Query Frame = 1
Query:    1 VAALHIYPVKSCAGHSVSKAELTTTGFRYDRLWMVLNSSN-RFVTQRRLPKMAHVRPSLPKADDEPLMLTAPGMNDISVPVLRAKDKGAKILEVWSSTCDGVDQGDAVAAWLTSFLGGGSGDGEAYRLVRMDEAFRRPVDPDFGGRGHF-VSFADGFPMLWASQESLEEVNRRLGEPIPMNRFRPNVVVTGSG-PFCEDEWTEMRVNGIIMRPVKPCSRCKIPTIDQKTLATSNEPTETLRTFR 723
            V AL+ YP+KSCAG ++  A L   G  +DR +M+++++N RF+TQR LP+MA + P L    D  L ++APG++ +SVPV RA     +++ VW   C  VDQGD +A W  +FLG       A RLVR+ + F R VDP +       V FADGFP+L  S+ESL ++N RL EP+PMNRFRPNVVV G+G PF ED W+ +R+ G I+  VK C+RC I T DQ+T A   EP  TL T+R
Sbjct:   19 VTALYHYPIKSCAGAALDVAALDARGIVHDREFMLVDAANGRFLTQRELPRMALITPRLDDGADTVLTVSAPGVSPLSVPV-RASGPTREVI-VWRDGCRVVDQGDEIARWFAAFLG------VACRLVRLADDFERKVDPAYATSARDQVGFADGFPLLLISEESLADLNARLAEPLPMNRFRPNVVVAGAGGPFAEDGWSRVRIGGTILHVVKACARCAITTTDQRTAAVGKEPLTTLATYR 254          
BLAST of mRNA_P-wetherbeei_contig626.4.1 vs. uniprot
Match: UPI000B5A1A7D (MOSC N-terminal beta barrel domain-containing protein n=1 Tax=Leptolyngbya ohadii TaxID=1962290 RepID=UPI000B5A1A7D)

HSP 1 Score: 212 bits (540), Expect = 7.850e-65
Identity = 108/242 (44.63%), Postives = 150/242 (61.98%), Query Frame = 1
Query:    1 VAALHIYPVKSCAGHSVSKAELTTTGFRYDRLWMVLNSSNRFVTQRRLPKMAHVRPSLPKADDEPLMLTAPGMNDISVPVLRAKDKGAKILEVWSSTCDGVDQGDAVAAWLTSFLGGGSGDGEAYRLVRMDEAFRRPVDPDFG-GRGHFVSFADGFPMLWASQESLEEVNRRLGEPIPMNRFRPNVVVTGSGPFCEDEWTEMRVNGIIMRPVKPCSRCKIPTIDQKTLATSNEPTETLRTFR 723
            V A++IYP+KSC G SV  AELT  G ++DR WM++     F+TQR LP++A + P +     E L L APG  D  VP+ ++    +  + VW   C  +DQGDAVAAW +  LG         RLVR+   + RPVD  +  G    VSFAD +P+L  S+ SLE++N+RL EP+PMNRFRPN+VV+G   + EDEW ++++  +++  VKPC+RC I T DQ+T     EP  TL T+R
Sbjct:   34 VTAINIYPIKSCRGISVQSAELTPWGLQWDRQWMIVTPEGEFITQRTLPELALIEPVITA---ESLYLMAPGQRDFQVPLQQSDPGKSMQVTVWGDRCQAIDQGDAVAAWFSRALG------TPARLVRIGTGYDRPVDAKYDRGTTAQVSFADSYPLLLISEASLEDLNQRLDEPLPMNRFRPNLVVSGCSAYAEDEWQQIQIADVLLDVVKPCTRCIITTTDQETTDRGKEPLATLSTYR 266          
BLAST of mRNA_P-wetherbeei_contig626.4.1 vs. uniprot
Match: UPI0018EF62A1 (MOSC domain-containing protein n=2 Tax=Leptolyngbya sp. FACHB-711 TaxID=2692813 RepID=UPI0018EF62A1)

HSP 1 Score: 210 bits (534), Expect = 3.790e-64
Identity = 111/247 (44.94%), Postives = 156/247 (63.16%), Query Frame = 1
Query:    1 VAALHIYPVKSCAGHSVSKAELTTTGFRYDRLWMVLNSSNRFVTQRRLPKMAHVRPSLPKADDEPLMLTAPGMNDISVPVLRAKDKGAKI-----LEVWSSTCDGVDQGDAVAAWLTSFLGGGSGDGEAYRLVRMDEAFRRPVDPDFG-GRGHFVSFADGFPMLWASQESLEEVNRRLGEPIPMNRFRPNVVVTGSGPFCEDEWTEMRVNGIIMRPVKPCSRCKIPTIDQKTLATSNEPTETLRTFR 723
            ++A+HIYP+KSC G +V+ AELT  G ++DR WMV+     F+TQR LP++A V P +  AD   L L APG  D  VP L+  D  A+      + VW   C+ +DQG+AVA W +  +G         RLVR+   + RP+D  +  G+   VSFADG+P+L  S+ SL+++NRRL EP+PMNRFRPN+VV+G   + EDEW ++++  + +  VKPC+RC I TIDQ+T     EP  TL T+R
Sbjct:   13 LSAVHIYPIKSCRGTAVTSAELTPWGLQWDRQWMVVTPEGEFLTQRTLPELALVEPVI-TADS--LYLMAPGQRDFLVP-LQQPDSAAESAKTIKVRVWGDQCEAIDQGEAVAQWFSRAMG------IPCRLVRIGAGYDRPIDAKYDRGQTAQVSFADGYPLLLVSEASLDDLNRRLAEPLPMNRFRPNLVVSGCSAYAEDEWQQIQIQNVPLDVVKPCTRCIITTIDQETTDRGKEPLATLATYR 249          
BLAST of mRNA_P-wetherbeei_contig626.4.1 vs. uniprot
Match: A0A800IPY5_9BACT (MOSC domain-containing protein n=1 Tax=candidate division Zixibacteria bacterium TaxID=2053527 RepID=A0A800IPY5_9BACT)

HSP 1 Score: 208 bits (530), Expect = 9.940e-64
Identity = 109/243 (44.86%), Postives = 153/243 (62.96%), Query Frame = 1
Query:    1 VAALHIYPVKSCAGHSVSKAELTTTGFRYDRLWMVLNSSNRFVTQRRLPKMAHVRPSLPKADDEPLMLTAPGMNDISVPVLRAKDKG-AKILEVWSSTCDGVDQGDAVAAWLTSFLGGGSGDGEAYRLVRMDEAFRRPVDPDFGGRG-HFVSFADGFPMLWASQESLEEVNRRLGEPIPMNRFRPNVVVTGSGPFCEDEWTEMRVNGIIMRPVKPCSRCKIPTIDQKTLATSNEPTETLRTFR 723
            +++LH+YP+KSCAGH +S+AEL   G   DR WMV+  S  F++QR  P M  ++ +L   DD  L ++AP M+D++   L  K++G  + +E+W   C+GVDQGDA AAW ++ L        A RLV     F RPVDPD+  R    V FADGFP+L  S  SL ++N RL EPI MNRFRPN+VV    P+ ED W ++RV  +++  VKPC RC    ++Q++ +  NEP +TL T+R
Sbjct:    4 ISSLHVYPIKSCAGHDLSRAELDVRGIHNDRSWMVVTESGSFLSQRSHPAMTLIQTAL---DDGHLSVSAPEMDDLT---LETKNEGDTRQVEIWGDLCEGVDQGDAAAAWFSTHLN------TACRLVHFKTDFVRPVDPDYAPRTTDQVGFADGFPLLLISVASLADLNVRLPEPIRMNRFRPNIVVADCPPYSEDTWKQIRVGDLLLDVVKPCGRCATTLVEQESGSKGNEPLKTLATYR 234          
BLAST of mRNA_P-wetherbeei_contig626.4.1 vs. uniprot
Match: A0A5A7QE12_STRAF (Molybdenum cofactor sulfurase family protein n=1 Tax=Striga asiatica TaxID=4170 RepID=A0A5A7QE12_STRAF)

HSP 1 Score: 207 bits (528), Expect = 8.560e-63
Identity = 117/251 (46.61%), Postives = 159/251 (63.35%), Query Frame = 1
Query:    1 VAALHIYPVKSCAGHSVSKAELTTTGFRYDRLWMVLNSSNRFVTQRRLPKMAHVRPSLPKA----DDEP-----LMLTAPGMNDISVPVLRAKDKGAKILEVWSSTCDGVDQGDAVAAWLTSFLGGGSGDGEAYRLVRMDEAFR-RPVDPDFGGRGHFVSFADGFPMLWASQESLEEVNRRLGEPIPMNRFRPNVVVTGSGPFCEDEWTEMRVNGIIMRPVKPCSRCKIPTIDQKTLATSNEPTETLRTFR 723
            V ++ +YP+KSC G S+ +A ++ TGFR+DR W+V+NS  R VTQR  PK+A V+  LP      D EP     L+++APGM+ + VP+ +  +K   +  VW  +   VD+G A A W ++FLG      +  RLVR ++A   R VDP +  RG+ V F+DG+P L  SQ SL  +N  L E IP+NRFRPN+VV G  PF ED WTEMR+N      VK CSRCK+PTIDQ+T    +EPT+TL +FR
Sbjct:   16 VKSIFVYPIKSCRGISLPQAPISPTGFRWDRQWLVVNSKGRAVTQRVEPKLALVQVQLPDEAFHPDWEPNKHSFLVISAPGMDVLRVPLAKPAEKIDGV-SVWEWSGSAVDEGPAAAQWFSNFLG------KPSRLVRFNDALEVRNVDPAYA-RGYKVMFSDGYPFLLLSQGSLNALNALLQESIPVNRFRPNIVVDGCEPFSEDLWTEMRINRSTFNGVKLCSRCKVPTIDQETAVGGSEPTQTLTSFR 258          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig626.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z5C1_9STRA1.530e-8152.87MOSC domain-containing protein n=1 Tax=Tribonema m... [more]
D8LMR0_ECTSI6.040e-7650.20MOSC domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A7S2W2F0_9STRA7.810e-7349.37Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A4D9D946_9STRA3.390e-7148.76MOSC domain-containing protein n=2 Tax=Monodopsida... [more]
W7TSW3_9STRA1.480e-6648.76Proliferation-associated protein 2g4 n=1 Tax=Nanno... [more]
A0A6J4VB52_9CHLR2.050e-6547.95Flavodoxin reductases (Ferredoxin-NADPH reductases... [more]
UPI000B5A1A7D7.850e-6544.63MOSC N-terminal beta barrel domain-containing prot... [more]
UPI0018EF62A13.790e-6444.94MOSC domain-containing protein n=2 Tax=Leptolyngby... [more]
A0A800IPY5_9BACT9.940e-6444.86MOSC domain-containing protein n=1 Tax=candidate d... [more]
A0A5A7QE12_STRAF8.560e-6346.61Molybdenum cofactor sulfurase family protein n=1 T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig626contigP-wetherbeei_contig626:6415..7661 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LMR0
PFAMsMOSC,MOSC_N
Model size726
Max annot lvl2759|Eukaryota
KEGG koko:K07140,ko:K18467
KEGG Pathwayko04144,map04144
Hectar predicted targeting categoryother localisation
Exons3
Evalue9.9e-77
EggNOG OGsCOG3217@1|root,KOG2362@2759|Eukaryota
Ec32 ortholog descriptionMolybdenum cofactor sulfurase, C-terminal
Ec32 orthologEc-02_003330.1
DescriptionMOSC domain-containing protein
Cds size726
COG categoryE
BRITEko00000,ko00001,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186900.641882-CDS-P-wetherbeei_contig626:6414..65891683186900.641882-CDS-P-wetherbeei_contig626:6414..6589Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig626 6415..6589 -
1683186900.651689-CDS-P-wetherbeei_contig626:6930..72051683186900.651689-CDS-P-wetherbeei_contig626:6930..7205Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig626 6931..7205 -
1683186900.659735-CDS-P-wetherbeei_contig626:7385..76611683186900.659735-CDS-P-wetherbeei_contig626:7385..7661Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig626 7386..7661 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig626.4.1prot_P-wetherbeei_contig626.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig626 6415..7661 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig626.4.1

>prot_P-wetherbeei_contig626.4.1 ID=prot_P-wetherbeei_contig626.4.1|Name=mRNA_P-wetherbeei_contig626.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=242bp
VAALHIYPVKSCAGHSVSKAELTTTGFRYDRLWMVLNSSNRFVTQRRLPK
MAHVRPSLPKADDEPLMLTAPGMNDISVPVLRAKDKGAKILEVWSSTCDG
VDQGDAVAAWLTSFLGGGSGDGEAYRLVRMDEAFRRPVDPDFGGRGHFVS
FADGFPMLWASQESLEEVNRRLGEPIPMNRFRPNVVVTGSGPFCEDEWTE
MRVNGIIMRPVKPCSRCKIPTIDQKTLATSNEPTETLRTFR*
back to top

mRNA from alignment at P-wetherbeei_contig626:6415..7661-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig626.4.1 ID=mRNA_P-wetherbeei_contig626.4.1|Name=mRNA_P-wetherbeei_contig626.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1247bp|location=Sequence derived from alignment at P-wetherbeei_contig626:6415..7661- (Phaeothamnion wetherbeei SAG_119_79)
GTCGCAGCTCTTCACATCTACCCGGTTAAGAGTTGTGCAGGTCACTCCGT GTCAAAAGCAGAGCTCACGACGACCGGCTTCCGCTACGATCGGTTATGGA TGGTATTGAACAGCAGCAACCGCTTCGTAACGCAGCGCCGCCTTCCCAAG ATGGCGCATGTCCGGCCATCGCTCCCAAAGGCCGATGACGAGCCATTAAT GCTTACAGCGCCAGGAATGAATGACATATCTGTGCCGGTATTGCGCGCAA AGGACAAAGGTGCCAAGATCCTGGAGGTTCAGGTTCGGTTTATTATTTGA CACGTGAAATCGGAGAGACGGCTGTTCCATGCAGAGTTTGATCTTAGTCC TCTCCTTTCTGGAAACCTCCCTTTGCACCGAATTGTCCTTGGACCAAAAG CAACGCACGGCAAACAAACTGCCCAACAAACGGTGGACGCAATTGCGCGA CGACAGGTCTGGAGCTCTACATGCGATGGCGTTGACCAGGGCGATGCAGT CGCGGCGTGGCTCACCTCCTTTCTCGGCGGCGGCAGCGGAGACGGCGAAG CCTACCGGCTCGTGCGCATGGACGAGGCGTTCCGGCGGCCTGTCGATCCG GACTTCGGCGGCCGCGGCCACTTTGTGTCCTTCGCGGACGGCTTCCCAAT GCTGTGGGCGTCGCAGGAATCGCTGGAGGAGGTGAACCGGCGGCTGGGGG AACCGATCCCCATGAACCGTTTCCGCCCCAAGTGAGTAGGCGAGGAACGA GAGAGCTGTCCAGTCTGTTTTCAAGGCTGTTTAAATGTTCTTTTTCCGCC GATAGAATGGCTTGCATTTGAGTAAGGTTGTCTTTGAGTCTGACCGATTC GCCTGGGAGAATTATCGCTCTGTCCTGAGGTGGAACGACGCGAAAGTTCG TCAGCGAAAATTGGGCCACTCTTCGCGTTTATCCTCGAAGACCTGAGCAT GCCCGGTATTGGAGTCATTTCGTCCATTAAACGGTGGGAACCAGACCTTG AGATCAGTCTAGCCTTTCCTTGCGCGCTCCCTGGCATCTGTCCTGCCGAC TCTCTGCAATCTCTCTCACCAGCGTCGTGGTGACCGGCAGTGGGCCGTTT TGCGAGGACGAGTGGACGGAGATGCGCGTGAACGGCATCATCATGCGGCC CGTGAAGCCGTGCTCGCGCTGCAAGATCCCGACCATTGACCAGAAGACGC TCGCGACCAGCAACGAGCCGACCGAGACGCTCCGAACCTTCCGGTGA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig626:6415..7661-

>mRNA_P-wetherbeei_contig626.4.1 ID=mRNA_P-wetherbeei_contig626.4.1|Name=mRNA_P-wetherbeei_contig626.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=726bp|location=Sequence derived from alignment at P-wetherbeei_contig626:6415..7661- (Phaeothamnion wetherbeei SAG_119_79)
GTCGCAGCTCTTCACATCTACCCGGTTAAGAGTTGTGCAGGTCACTCCGT
GTCAAAAGCAGAGCTCACGACGACCGGCTTCCGCTACGATCGGTTATGGA
TGGTATTGAACAGCAGCAACCGCTTCGTAACGCAGCGCCGCCTTCCCAAG
ATGGCGCATGTCCGGCCATCGCTCCCAAAGGCCGATGACGAGCCATTAAT
GCTTACAGCGCCAGGAATGAATGACATATCTGTGCCGGTATTGCGCGCAA
AGGACAAAGGTGCCAAGATCCTGGAGGTCTGGAGCTCTACATGCGATGGC
GTTGACCAGGGCGATGCAGTCGCGGCGTGGCTCACCTCCTTTCTCGGCGG
CGGCAGCGGAGACGGCGAAGCCTACCGGCTCGTGCGCATGGACGAGGCGT
TCCGGCGGCCTGTCGATCCGGACTTCGGCGGCCGCGGCCACTTTGTGTCC
TTCGCGGACGGCTTCCCAATGCTGTGGGCGTCGCAGGAATCGCTGGAGGA
GGTGAACCGGCGGCTGGGGGAACCGATCCCCATGAACCGTTTCCGCCCCA
ACGTCGTGGTGACCGGCAGTGGGCCGTTTTGCGAGGACGAGTGGACGGAG
ATGCGCGTGAACGGCATCATCATGCGGCCCGTGAAGCCGTGCTCGCGCTG
CAAGATCCCGACCATTGACCAGAAGACGCTCGCGACCAGCAACGAGCCGA
CCGAGACGCTCCGAACCTTCCGGTGA
back to top