mRNA_P-wetherbeei_contig6253.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
|
Overview
Homology
BLAST of mRNA_P-wetherbeei_contig6253.1.1 vs. uniprot
Match: A0A835ZF85_9STRA (Helicase C-terminal domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF85_9STRA) HSP 1 Score: 191 bits (484), Expect = 1.890e-51 Identity = 143/282 (50.71%), Postives = 173/282 (61.35%), Query Frame = 1
Query: 1 ALGILAQRACVTAETLPALREHLEAV-ADSGDEGPGSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQQRLSGAALVMLKSLITVVGYMLAEDIRNAADYRMVVLR--DRQGGFGDDDGXXXXXXXXXXXGA--------------GELVTSLCLWCLNSGVCFREIGADAWSVVLTSGTLSPLDSLAVGLGLDFPVRLEAGHVINVPQQCLVASVGRAGGVSLSAKFSDQNGFAYQDALGAALMEYAEVVPGGVLVFFPSYGLMHKMARRWESTGLLDRLQ 795
ALGIL RA +TAE+ L L+ + A+ + G XXXXXXXXXX Q +LS AL ++ +IT +ML ++ NAA Y+M V+R DR GG G XXXXXXXXXXX G +V CLWCL++ VCF EI A SVVLTSGTLSP+DS A LG+ FP++LEAGHVI+V QQC VASVG GVSL A F +Q YQDALGAAL+ YA VV GGVLVFFPSYGL+ ++ RWE TGLL ++Q
Sbjct: 533 ALGILGHRAGITAESAEQLESALQLISAEQEQDAAGD---------------MAXXXXXXXXXXDAQQSKLSAPALNVVSGVITAARFMLGKESTNAAHYKMAVIRERDRSGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRMVMYWCLWCLSASVCFEEIAEQARSVVLTSGTLSPMDSFASELGVPFPIQLEAGHVIDVRQQCFVASVGACNGVSLKATFGNQGLAEYQDALGAALLNYARVVRGGVLVFFPSYGLLARVRERWELTGLLAQMQ 799
BLAST of mRNA_P-wetherbeei_contig6253.1.1 vs. uniprot
Match: D7FLD2_ECTSI (DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLD2_ECTSI) HSP 1 Score: 188 bits (477), Expect = 1.420e-50 Identity = 117/271 (43.17%), Postives = 158/271 (58.30%), Query Frame = 1
Query: 1 ALGILAQRACVTAETLPALREHLEAVA-DSGDEGPGSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQQRLSGAALVMLKSLITVVGYMLAEDIRNAADYRMVVLRDRQGGFGDDDGXXXXXXXXXXXGAGELV---TSLCLWCLNSGVCFREIGADAWSVVLTSGTLSPLDSLAVGLGLDFPVRLEAGHVINVPQQCLVASVGRAGGVSLSAKFSDQNGFAYQDALGAALMEYAEVVPGGVLVFFPSYGLMHKMARRWESTGLLDRLQQV 801
ALG++ RA VT+E+L L+E L+ V + G+ P + LS ++ + SL+ V+G++L E + N Y+MVVLR+R G + + G+G + T LC WC ++ CF EI SVVLTSGTLSP++S A LG++FP RLEA HVINV +QCLV SVG G VSL A++++Q+ YQDALG AL+++A VVPGG+LVFFPSYGLM KM RWE TGLL LQ++
Sbjct: 461 ALGLMQSRAGVTSESLVYLKEALKMVINEDGNADP---------------YARDQADGASFDHRLGGDEVLSSGSVHVTASLVKVLGFLLTEGMENVDHYKMVVLRER-GPW--EPVSSRGRRGRNRPGSGSITAMETYLCFWCQSASTCFSEIDKQVHSVVLTSGTLSPMNSFAGELGIEFPHRLEANHVINVKKQCLVTSVGYFGKVSLDARYTNQHDLKYQDALGNALLQHARVVPGGILVFFPSYGLMDKMHDRWEVTGLLQALQEI 713
BLAST of mRNA_P-wetherbeei_contig6253.1.1 vs. uniprot
Match: A0A6H5JGC9_9PHAE (Helicase ATP-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGC9_9PHAE) HSP 1 Score: 183 bits (464), Expect = 7.580e-49 Identity = 116/272 (42.65%), Postives = 158/272 (58.09%), Query Frame = 1
Query: 1 ALGILAQRACVTAETLPALREHLEAV-ADSGDEGPGSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQQRLSGAALVMLKSLITVVGYMLAEDIRNAADYRMVVLRDRQGGFGDDDGXXXXXXXXXXXGAGELV---TSLCLWCLNSGVCFREIGADAWSVVLTSGTLSPLDSLAVGLGLDFPVRLEAGHVINVPQQCLVASVGRAGGVSLSAKFSDQNGFAYQDALGAALMEYAEVVPGGVLVFFPSYGLMHKMARRWES-TGLLDRLQQV 801
ALG++ RA VT+E+L L+E L+ V ++ G+ P + LS + + SL+ V+G++L E + N Y+MVVLR+R G + + G+G + T LC WC ++ CF EI SVVLTSGTLSP++S A LG++FP RLEA HVINV +QCLV SVG G VSL A++++Q+ YQDALG AL+++A +VPGG+LVFFPSYGLM KM RWE TGLL LQ++
Sbjct: 320 ALGLMQSRAGVTSESLVYLKEALKMVMSEDGNADP---------------YARDQVDGASFGHGHGGDEVLSSGSAHVTASLVKVLGFLLTEGMENVDHYKMVVLRER-GPW--EPVSSRGRRGRNRLGSGSITAMETYLCFWCQSASTCFSEIDKQVHSVVLTSGTLSPMNSFAGELGIEFPHRLEANHVINVKKQCLVTSVGYFGKVSLDARYTNQHDLKYQDALGNALLQHARIVPGGILVFFPSYGLMDKMHDRWEVVTGLLQALQEI 573
BLAST of mRNA_P-wetherbeei_contig6253.1.1 vs. uniprot
Match: A0A2D4BU49_PYTIN (DNA helicase n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BU49_PYTIN) HSP 1 Score: 164 bits (415), Expect = 2.810e-42 Identity = 98/276 (35.51%), Postives = 147/276 (53.26%), Query Frame = 1
Query: 4 LGILAQRACVTAETLPALREHLEAVAD----------SGDEGPGSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQQRLSGAALVMLKSLITVVGYMLAEDIRNAADYRMVVLRDRQGGFGDDDGXXXXXXXXXXXGAGELVTSLCLWCLNSGVCFREIGADAWSVVLTSGTLSPLDSLAVGLGLDFPVRLEAGHVINVPQQCLVASVGRA-GGVSLSAKFSDQNGFAYQDALGAALMEYAEVVPGGVLVFFPSYGLMHKMARRWESTGLLDRLQQ 798
+ + A+ +T ET A+RE L AV D G+EG +G QRL AAL ++S++ V GYM +++R D++++V++ R G G+ E LC+WCLN+ V F ++ SV+LTSGTLSP+DS A LG +FP+RLEA HV+++ +Q + +V GGV LS + +Q F +QD++G L +YA+VVPGG+L+FFPSY LM K+ RW TG+ R+++
Sbjct: 455 IAMFAEYTGMTHETYDAIREDLRAVVDYEKQLQQTTTEGEEGGEAGDDSGG-------------------------QRLPAAALTTIRSVLNVAGYMYRDNLRYLDDFKLIVMKKRS--HQRSSGSRSRGYNNMSSGSSEWEFKLCIWCLNAAVAFSDVVRQVRSVILTSGTLSPMDSFAGELGTEFPIRLEASHVVDMRRQVFIGAVMNGPGGVDLSCVYRNQQEFRFQDSMGELLHQYAQVVPGGLLMFFPSYMLMEKLETRWRQTGVWARIEE 703
BLAST of mRNA_P-wetherbeei_contig6253.1.1 vs. uniprot
Match: A0A8K1C7G1_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C7G1_PYTOL) HSP 1 Score: 159 bits (403), Expect = 1.140e-40 Identity = 84/211 (39.81%), Postives = 127/211 (60.19%), Query Frame = 1
Query: 205 RLSGAALVMLKSLITVVGYMLAEDIRNAADYRMVVLRDRQ-----------GGFGDDDGXXXXXXXXXXXGAGELVTSLCLWCLNSGVCFREIGADAWSVVLTSGTLSPLDSLAVGLGLDFPVRLEAGHVINVPQQCLVASVGRAGG-VSLSAKFSDQNGFAYQDALGAALMEYAEVVPGGVLVFFPSYGLMHKMARRWESTGLLDRLQQV 801
RLS AL ++S+I V YM ++++ D++++VL+ RQ F DG +C+WCLN+ V F ++ +A SV+LTSGTLSP+DS A LG DFP+RLEA HV+N+ +Q + ++ G V LS+ + +Q F YQD++G L ++A+VVPGGVL+FFPSY LM K+ RW TG+ ++++Q+
Sbjct: 516 RLSAMALGTIRSIINVADYMYRDELKYLDDFKLIVLKTRQKRRPTKSRYGANSFSPGDGDGWE-------------VKMCIWCLNAAVAFSDVVKEARSVILTSGTLSPMDSFAGELGTDFPIRLEANHVVNMRRQVFIGAIMNGPGRVDLSSTYKNQQEFRYQDSMGELLFKHAQVVPGGVLMFFPSYMLMEKLETRWRQTGVWNKIEQL 713
BLAST of mRNA_P-wetherbeei_contig6253.1.1 vs. uniprot
Match: A0A662WP93_9STRA (Helicase ATP-binding domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WP93_9STRA) HSP 1 Score: 159 bits (403), Expect = 1.150e-40 Identity = 83/196 (42.35%), Postives = 126/196 (64.29%), Query Frame = 1
Query: 208 LSGAALVMLKSLITVVGYMLAEDIRNAADYRMVVLRDRQGGFGDDDGXXXXXXXXXXXGAGELVTSLCLWCLNSGVCFREIGADAWSVVLTSGTLSPLDSLAVGLGLDFPVRLEAGHVINVPQQCLVASVGRAGG-VSLSAKFSDQNGFAYQDALGAALMEYAEVVPGGVLVFFPSYGLMHKMARRWESTGLLDRL 792
L AL ++S++ VV YM ++ + D+++VV++ R G G G E +CLWCLN+ V F +I + A SV+LTSGTLSP+DS A LG +FP+RLEA HV+N+ +Q + S+ G V LS+ + +Q F YQD++G L++Y++V+PGGVL+FFPSY L++K++ RW+ TGL D++
Sbjct: 529 LGSLALSTVESIMNVVDYMFRDESKYLDDFKLVVIKSRVPWRG---GGRFQSPNKSSNG-NEWQLKMCLWCLNAAVAFSDIVSQARSVILTSGTLSPMDSFAGELGTEFPIRLEANHVVNMRKQVFIGSIMNGPGYVDLSSTYKNQQEFKYQDSMGQLLLQYSQVIPGGVLMFFPSYSLLNKLSTRWKQTGLWDQM 720
BLAST of mRNA_P-wetherbeei_contig6253.1.1 vs. uniprot
Match: A0A2P4X5E5_9STRA (Helicase ATP-binding domain-containing protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4X5E5_9STRA) HSP 1 Score: 152 bits (385), Expect = 2.810e-38 Identity = 78/197 (39.59%), Postives = 124/197 (62.94%), Query Frame = 1
Query: 208 LSGAALVMLKSLITVVGYMLAEDIRNAADYRMVVLRDRQGGFGDDDGXXXXXXXXXXXGAGELVTSLCLWCLNSGVCFREIGADAWSVVLTSGTLSPLDSLAVGLGLDFPVRLEAGHVINVPQQCLV-ASVGRAGGVSLSAKFSDQNGFAYQDALGAALMEYAEVVPGGVLVFFPSYGLMHKMARRWESTGLLDRLQ 795
L+ AL LI+V YM + + +NA D+++++ + + D+ G + T LC+WCL++ V F E+ ++ SV+L SGTLSP+DS A LG+DFP+RLEA HV+N+ +Q + A + GGV L + + +Q F YQD++G L++YA+V+PGG+L+FFPSY LM + RW+ TG+ ++L+
Sbjct: 504 LNNRALNTATRLISVATYMFSNNSKNADDFKLLITKKMR--LNDE-------------GEEVIDTKLCIWCLSAAVVFSEVARESHSVILASGTLSPMDSFAGELGVDFPIRLEANHVVNMRKQVFIGALMSGPGGVDLLSTYKNQQNFQYQDSIGLLLLQYAQVIPGGILMFFPSYALMGILKSRWKRTGVWNKLE 685
BLAST of mRNA_P-wetherbeei_contig6253.1.1 vs. uniprot
Match: H3GHW5_PHYRM (Helicase ATP-binding domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GHW5_PHYRM) HSP 1 Score: 152 bits (385), Expect = 2.940e-38 Identity = 76/198 (38.38%), Postives = 122/198 (61.62%), Query Frame = 1
Query: 208 LSGAALVMLKSLITVVGYMLAEDIRNAADYRMVVLRDRQGGFGDDDGXXXXXXXXXXXGAGELVTSLCLWCLNSGVCFREIGADAWSVVLTSGTLSPLDSLAVGLGLDFPVRLEAGHVINVPQQCLVASVGRA-GGVSLSAKFSDQNGFAYQDALGAALMEYAEVVPGGVLVFFPSYGLMHKMARRWESTGLLDRLQQ 798
L AL +S++ VV YM + ++ D+++VV++ + + G E +C+WCLN+ V F +I + A SV+LTSGTLSP++S A LG+DFP+RLEA HV+N+ +Q + +V G V L + +++Q YQD++G L++Y++ VPGG+L+FFPSY L++K+ RW+ T L +L+Q
Sbjct: 538 LGALALATAQSIVNVVDYMFRDALKYIDDFKLVVIKSKSTWREN----ASFRSPTKRNGGDEWELKMCIWCLNAAVAFSDIASQARSVILTSGTLSPMESFAGELGVDFPIRLEANHVVNMRKQVFIGAVMHGPGNVDLQSTYNNQQDIKYQDSVGQLLLQYSQAVPGGILMFFPSYSLLNKLTTRWKKTKLWSQLEQ 731
BLAST of mRNA_P-wetherbeei_contig6253.1.1 vs. uniprot
Match: D0NS72_PHYIT (Helicase ATP-binding domain-containing protein n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0NS72_PHYIT) HSP 1 Score: 151 bits (381), Expect = 3.160e-38 Identity = 79/197 (40.10%), Postives = 127/197 (64.47%), Query Frame = 1
Query: 208 LSGAALVMLKSLITVVGYMLAEDIRNAADYRMVVLRDRQGGFGDDDGXXXXXXXXXXXGAGELV-TSLCLWCLNSGVCFREIGADAWSVVLTSGTLSPLDSLAVGLGLDFPVRLEAGHVINVPQQCLV-ASVGRAGGVSLSAKFSDQNGFAYQDALGAALMEYAEVVPGGVLVFFPSYGLMHKMARRWESTGLLDRL 792
LS +AL LI+V YM +++ +NA D+++++ + + +D+G E++ T LC+WCL++ V F E+ ++ SV+L SGTLSP++S A LG+DFP+RLEA HV+N+ +Q V A + GGV L + + +Q F YQD++G L++YA+++PGG+L+FFPSY L+ + RWE TG+ +L
Sbjct: 378 LSNSALNTATRLISVATYMFSDNCKNADDFKLLITKKMRV---NDEGE-------------EIIDTKLCIWCLSAAVVFAEVARNSHSVILASGTLSPMNSFAGELGVDFPIRLEANHVVNMRKQVFVGALMNGPGGVDLLSTYKNQQNFQYQDSMGYLLLQYAQMIPGGILMFFPSYALLGILKARWERTGIWAKL 558
BLAST of mRNA_P-wetherbeei_contig6253.1.1 vs. uniprot
Match: W2Q1Q3_PHYPN (DNA helicase n=1 Tax=Phytophthora parasitica (strain INRA-310) TaxID=761204 RepID=W2Q1Q3_PHYPN) HSP 1 Score: 151 bits (382), Expect = 3.290e-38 Identity = 79/197 (40.10%), Postives = 124/197 (62.94%), Query Frame = 1
Query: 208 LSGAALVMLKSLITVVGYMLAEDIRNAADYRMVVLRDRQGGFGDDDGXXXXXXXXXXXGAGELVTSLCLWCLNSGVCFREIGADAWSVVLTSGTLSPLDSLAVGLGLDFPVRLEAGHVINVPQQCLV-ASVGRAGGVSLSAKFSDQNGFAYQDALGAALMEYAEVVPGGVLVFFPSYGLMHKMARRWESTGLLDRLQ 795
LS +AL LI+V YM + + +NA D+++++ + + D+ G + T LC+WCL++ V F E+ ++ SV+L SGTLSP+DS A LG++FP+RLEA HV+N+ +Q V A + GGV L + + +Q F YQD++G L++YA+++PGG+L+FFPSY LM + RWE TG+ +L+
Sbjct: 259 LSNSALNTATRLISVATYMFSNNGKNADDFKLLITKKMR--LNDE-------------GEEVIDTKLCIWCLSAAVVFAEVARNSHSVILASGTLSPMDSFAGELGVEFPIRLEANHVVNMRKQVFVGALMNGPGGVDLLSTYKNQQNFQYQDSMGYLLLQYAQMIPGGILMFFPSYALMGILKARWERTGIWAKLE 440 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6253.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig6253.1.1 >prot_P-wetherbeei_contig6253.1.1 ID=prot_P-wetherbeei_contig6253.1.1|Name=mRNA_P-wetherbeei_contig6253.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=271bp ALGILAQRACVTAETLPALREHLEAVADSGDEGPGSGGGSGGGSAAAATSback to top mRNA from alignment at P-wetherbeei_contig6253:778..2173+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig6253.1.1 ID=mRNA_P-wetherbeei_contig6253.1.1|Name=mRNA_P-wetherbeei_contig6253.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1396bp|location=Sequence derived from alignment at P-wetherbeei_contig6253:778..2173+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig6253:778..2173+ >mRNA_P-wetherbeei_contig6253.1.1 ID=mRNA_P-wetherbeei_contig6253.1.1|Name=mRNA_P-wetherbeei_contig6253.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=813bp|location=Sequence derived from alignment at P-wetherbeei_contig6253:778..2173+ (Phaeothamnion wetherbeei SAG_119_79)back to top |