mRNA_P-wetherbeei_contig6245.1.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6245.1.2
Unique NamemRNA_P-wetherbeei_contig6245.1.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6245.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6245contigP-wetherbeei_contig6245:711..2157 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1223
Hectar predicted targeting categoryother localisation
Exons2
Cds size900
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186899.821328-UTR-P-wetherbeei_contig6245:710..7501683186899.821328-UTR-P-wetherbeei_contig6245:710..750Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6245 711..750 +
1683186899.8457692-UTR-P-wetherbeei_contig6245:1874..21571683186899.8457692-UTR-P-wetherbeei_contig6245:1874..2157Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6245 1875..2157 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186899.8300138-CDS-P-wetherbeei_contig6245:750..12971683186899.8300138-CDS-P-wetherbeei_contig6245:750..1297Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6245 751..1297 +
1683186899.8378062-CDS-P-wetherbeei_contig6245:1521..18741683186899.8378062-CDS-P-wetherbeei_contig6245:1521..1874Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6245 1522..1874 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6245.1.2prot_P-wetherbeei_contig6245.1.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6245 751..1874 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6245.1.2

>prot_P-wetherbeei_contig6245.1.2 ID=prot_P-wetherbeei_contig6245.1.2|Name=mRNA_P-wetherbeei_contig6245.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=300bp
MASIETAAGRGSRAAAAATTNGTGMETDDVTFANGVPPPRRSAWGDPLLL
PSVTFDLSSGSARAGVGTAAGARHRPTPARVTVAQGRRLRGGTLWGTPSG
VGLTPRSHIPSSLRPRYERSPSAMAWSGDDYDGDGDGGGDDSGGRGGGGN
SIGGDVVFGGSSVAPMEESTPWRGGNARTDNGGESANSSYYSGNGGAATP
SYRGSGGGGGDAGNKDSGGSSGGGDATPFSRSFTSSSATPYSEAGASSFT
GVRLDMETPTPTPQRRYHGDGGGAGSDGDGDGAWPNQRVRFSGDHLFTS*
back to top

mRNA from alignment at P-wetherbeei_contig6245:711..2157+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6245.1.2 ID=mRNA_P-wetherbeei_contig6245.1.2|Name=mRNA_P-wetherbeei_contig6245.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1447bp|location=Sequence derived from alignment at P-wetherbeei_contig6245:711..2157+ (Phaeothamnion wetherbeei SAG_119_79)
TGAAGAGGCTGCGGCCTCTGCCGCGACGGCGCGGCGCCGCATGGCGAGCA
TCGAGACGGCAGCTGGCCGCGGTTCCAGGGCGGCGGCGGCGGCAACGACG
AACGGAACGGGCATGGAGACCGACGACGTGACTTTCGCCAACGGGGTCCC
GCCACCGAGGCGTTCCGCCTGGGGCGATCCCCTGCTGCTGCCCAGCGTCA
CATTTGACCTCTCCTCCGGGTCGGCCAGAGCGGGGGTTGGCACGGCGGCG
GGCGCGCGCCACCGGCCCACGCCGGCCCGCGTGACGGTGGCGCAAGGGCG
GCGGCTGCGGGGCGGCACGCTGTGGGGTACGCCGTCGGGCGTGGGGCTGA
CGCCGCGGTCGCACATACCGTCGTCTTTGCGGCCGCGCTACGAGCGCAGC
CCCTCGGCGATGGCTTGGAGCGGCGACGACTACGACGGCGACGGTGACGG
CGGCGGCGACGACAGTGGTGGAAGAGGCGGCGGTGGCAATAGCATTGGCG
GCGACGTCGTGTTCGGGGGGTCATCGGTGGCGCCGATGGAGGAGTCGACG
CCATGGCGTGGCGGCAATGCTCGAACGGACAATGGAGGTGAGAAAGTCGG
GCTCAAGGGTGCCTGTGCCGCTGTCGGTCTCTCTTCGATGCTACGTGTGT
TCATGGTATTGTTCTCTCTTCAATGCCACCGCAACAACAAACGACGCCGG
GGATGCTGTTTGCCTGACTTGCCGTAAACCTTTGCGCCACCTTTGTCGGT
CCTTTCCGCTCCCTGGCTCCGCCGTTACCGCTTCCCCCCGCAATCCCACC
ACCGACGTCAGGCGAGAGTGCAAACAGCTCATACTACAGTGGCAACGGCG
GCGCCGCCACTCCTTCGTACAGGGGTAGTGGCGGCGGCGGCGGAGACGCT
GGCAACAAGGACAGCGGCGGGAGCAGCGGCGGCGGGGACGCGACGCCGTT
CTCGCGATCCTTCACTTCCAGTTCTGCCACGCCGTACTCCGAAGCCGGCG
CCTCGTCGTTCACCGGAGTTCGGCTGGATATGGAGACGCCGACGCCGACG
CCGCAGCGCCGATATCACGGCGACGGCGGTGGCGCCGGCAGTGACGGGGA
CGGCGACGGAGCATGGCCCAACCAGCGGGTGCGCTTCTCGGGCGATCACC
TCTTCACAAGCTAGTGTTGGGCGGGCGGCTGTCACAAGACATTGACCAGG
CTGGCGAGTGCGTGTGGTCCCACAGGCGTCTACGCCATGATGGCGCGGTA
ATGTCGCCCGTTTCTCCCTTCTTCCTTTCCGCTTTTCCAGAGTACGTATG
TGGCAGAATGCTGCCGATTCTGCCAAACTGGCAGAATAATGTGGCGGAAT
AGGTTCTGCCAGCACTTTTGCAAATGGGTGTTGGCAGATTTGGAAGCGAC
GCACATGAACGCACATGAAGTAGACCTATAAAGACATTTACCGGACC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig6245:711..2157+

>mRNA_P-wetherbeei_contig6245.1.2 ID=mRNA_P-wetherbeei_contig6245.1.2|Name=mRNA_P-wetherbeei_contig6245.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=900bp|location=Sequence derived from alignment at P-wetherbeei_contig6245:711..2157+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGAGCATCGAGACGGCAGCTGGCCGCGGTTCCAGGGCGGCGGCGGC
GGCAACGACGAACGGAACGGGCATGGAGACCGACGACGTGACTTTCGCCA
ACGGGGTCCCGCCACCGAGGCGTTCCGCCTGGGGCGATCCCCTGCTGCTG
CCCAGCGTCACATTTGACCTCTCCTCCGGGTCGGCCAGAGCGGGGGTTGG
CACGGCGGCGGGCGCGCGCCACCGGCCCACGCCGGCCCGCGTGACGGTGG
CGCAAGGGCGGCGGCTGCGGGGCGGCACGCTGTGGGGTACGCCGTCGGGC
GTGGGGCTGACGCCGCGGTCGCACATACCGTCGTCTTTGCGGCCGCGCTA
CGAGCGCAGCCCCTCGGCGATGGCTTGGAGCGGCGACGACTACGACGGCG
ACGGTGACGGCGGCGGCGACGACAGTGGTGGAAGAGGCGGCGGTGGCAAT
AGCATTGGCGGCGACGTCGTGTTCGGGGGGTCATCGGTGGCGCCGATGGA
GGAGTCGACGCCATGGCGTGGCGGCAATGCTCGAACGGACAATGGAGGCG
AGAGTGCAAACAGCTCATACTACAGTGGCAACGGCGGCGCCGCCACTCCT
TCGTACAGGGGTAGTGGCGGCGGCGGCGGAGACGCTGGCAACAAGGACAG
CGGCGGGAGCAGCGGCGGCGGGGACGCGACGCCGTTCTCGCGATCCTTCA
CTTCCAGTTCTGCCACGCCGTACTCCGAAGCCGGCGCCTCGTCGTTCACC
GGAGTTCGGCTGGATATGGAGACGCCGACGCCGACGCCGCAGCGCCGATA
TCACGGCGACGGCGGTGGCGCCGGCAGTGACGGGGACGGCGACGGAGCAT
GGCCCAACCAGCGGGTGCGCTTCTCGGGCGATCACCTCTTCACAAGCTAG
back to top