mRNA_P-wetherbeei_contig6242.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6242.1.1
Unique NamemRNA_P-wetherbeei_contig6242.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig6242.1.1 vs. uniprot
Match: D7FI79_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI79_ECTSI)

HSP 1 Score: 106 bits (265), Expect = 2.530e-20
Identity = 80/202 (39.60%), Postives = 107/202 (52.97%), Query Frame = 1 
Query:  901 VAAASDGG-----WPARLRRLYRLLWHLETLLYAGALPPLTTAAGWIAAGRSGRLLAVLERSTVETVVEDVRSRALSMLR-------GDRAIPEEEEDGGHGGTGGTEQDDSWA-----EELLADFLLQKVERTPTAEAMELCAAVAVASRPFVVQPELRLLRDDARLMRLVLGACYAWRDNPLPPRALEAAWQMFECLPER 1455
            V+++S GG        +L RL RLL HL +L+YAG++ P  T A W   G   R+ AVL  S+V T+  DVRS A +          GD  +    E  G+     T Q  S A     E ++   L   V+  P+AE ME CAAVA ASRP V + + RL+R    L+ L+L ACYAW +     RA+EAAW + EC+P R
Sbjct: 1096 VSSSSSGGRGGDVTEGQLVRLDRLLQHLTSLVYAGSVSPSVTLAAWENMGLEERMSAVLSASSVGTIANDVRSFASAAXXXXXXXASGDDLLERPREQEGYEVP--TSQAVSAAVPTRLEGVMVRVLGALVKTAPSAERMEACAAVAKASRPEVPEND-RLIRKPEALLTLLLDACYAWTETAPDARAMEAAWDLLECVPTR 1294
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6242.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FI79_ECTSI2.530e-2039.60Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6242contigP-wetherbeei_contig6242:62..1865 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FI79
Model size1593
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue4.14e-21
EggNOG OGs2D0V1@1|root,2SFKQ@2759|Eukaryota
Cds size1590
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186899.6357212-CDS-P-wetherbeei_contig6242:62..4131683186899.6357212-CDS-P-wetherbeei_contig6242:62..413Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6242 63..413 -
1683186899.6444836-CDS-P-wetherbeei_contig6242:626..18651683186899.6444836-CDS-P-wetherbeei_contig6242:626..1865Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6242 627..1865 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6242.1.1prot_P-wetherbeei_contig6242.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6242 63..1865 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6242.1.1

>prot_P-wetherbeei_contig6242.1.1 ID=prot_P-wetherbeei_contig6242.1.1|Name=mRNA_P-wetherbeei_contig6242.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=530bp
VLLRHPLEVLAVRLDLLRRIPETVDPATYAHLLPCVAPSSGASETGGGTG
IAGGGGGPAGAPPYYCLGARSGAPELAAGLGGGGGDGGSTGFNGDHPALP
GLEPEGAAPSAAAAGGAVATHDTEALLAKTRQVALSQSDPGVLARWYYER
CLEMDALGGQVKHALDMCRLGLARIGVADERSAAMAVSGFGHGGNGGGNG
DASAGDVHGSGGGGGNKAVKGKRHKSFEAGKSQGAAAGRAGEGWEWDDLD
EHEDNGDKNDDASHEFEKPSEASPLTDARAAAIAAAAVAGGQSSSDMLQT
VAAASDGGWPARLRRLYRLLWHLETLLYAGALPPLTTAAGWIAAGRSGRL
LAVLERSTVETVVEDVRSRALSMLRGDRAIPEEEEDGGHGGTGGTEQDDS
WAEELLADFLLQKVERTPTAEAMELCAAVAVASRPFVVQPELRLLRDDAR
LMRLVLGACYAWRDNPLPPRALEAAWQMFECLPERLPTAAAAAEVDGGIR
GGGDGGGSGGGGGDGSGGGRNGGGGWAGQQ
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mRNA from alignment at P-wetherbeei_contig6242:62..1865-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6242.1.1 ID=mRNA_P-wetherbeei_contig6242.1.1|Name=mRNA_P-wetherbeei_contig6242.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1804bp|location=Sequence derived from alignment at P-wetherbeei_contig6242:62..1865- (Phaeothamnion wetherbeei SAG_119_79)
GTCCTCTTGCGGCACCCGCTGGAAGTGTTGGCGGTGCGGTTAGACTTGCT
GCGCCGCATCCCGGAGACGGTGGATCCGGCAACGTACGCCCACCTTTTGC
CCTGCGTGGCGCCGTCCTCTGGCGCCTCGGAAACCGGCGGCGGCACCGGC
ATCGCAGGCGGCGGCGGAGGACCCGCAGGCGCTCCGCCATACTACTGTCT
TGGCGCAAGGAGCGGCGCCCCGGAGCTGGCCGCGGGACTGGGCGGTGGCG
GTGGCGACGGTGGTAGTACAGGCTTCAACGGCGATCATCCTGCTCTGCCC
GGTCTCGAGCCGGAGGGGGCGGCGCCATCGGCAGCGGCTGCAGGCGGCGC
CGTAGCCACCCACGACACGGAGGCGCTCCTGGCGAAGACGCGACAGGTGG
CGCTCTCGCAGTCGGATCCGGGGGTCCTGGCAAGGTGGTACTACGAGCGC
TGTCTCGAAATGGACGCGCTGGGCGGGCAGGTCAAGCACGCGCTCGACAT
GTGCCGGCTAGGGCTGGCCCGCATCGGCGTGGCCGACGAGCGAAGTGCGG
CGATGGCGGTGAGTGGGTTCGGACACGGCGGCAATGGCGGCGGCAACGGT
GATGCTAGCGCTGGTGATGTGCATGGTAGTGGGGGTGGCGGCGGGAATAA
AGCCGTGAAGGGCAAGAGACACAAGAGTTTCGAGGCGGGCAAATCACAGG
GAGCGGCGGCGGGAAGGGCGGGCGAGGGGTGGGAATGGGATGATCTAGAC
GAGCACGAGGACAATGGCGACAAAAACGACGATGCTAGTCATGAATTTGA
AAAGCCTAGCGAAGCATCGCCACTCACCGACGCCAGGGCGGCGGCGATAG
CGGCGGCGGCGGTTGCCGGGGGCCAAAGCAGTTCTGACATGCTGCAGACA
GTGGCGGCCGCGAGTGACGGCGGCTGGCCGGCGCGCCTGCGCCGCCTCTA
CCGCCTCCTCTGGCACCTCGAGACGCTGCTGTACGCCGGCGCGCTGCCGC
CGCTAACGACGGCGGCGGGCTGGATAGCAGCTGGTCGTAGCGGCCGGCTG
CTGGCGGTGCTGGAGCGGTCGACGGTTGAGACGGTCGTGGAGGACGTCCG
TTCGCGGGCGCTGTCGATGTTACGCGGCGACCGCGCCATTCCTGAGGAGG
AAGAAGATGGCGGCCACGGCGGAACCGGCGGAACGGAGCAGGACGACAGC
TGGGCGGAGGAGCTCCTGGCGGACTTTTTGCTGCAAAAAGTGAGCGAGCG
ATTGGTGTCGTTCCGGCGAATGGTCGAGTGTATAGGAGCGGGAGTTGGAA
ATTACCTGACGCTTATTGTGGCTTTCTTCCCCATTTCTGGCGCAGCTTGC
ATTTAGGGCTCCAGGCGTAGCTACCTCCTTAACAGGCGAGCTTTCTCCAG
CGCAATCAGTTTTGACCTGGTGATAACGCCGGTACATTCCATTCCGCGGC
AGGTTGAGCGCACTCCGACTGCCGAGGCGATGGAGCTCTGCGCTGCCGTG
GCGGTGGCCAGCCGACCATTCGTGGTGCAGCCGGAGCTGCGGCTCCTGCG
GGACGACGCCCGCCTCATGCGGCTCGTCCTCGGCGCCTGCTACGCCTGGC
GGGACAACCCGCTGCCCCCGCGCGCACTCGAGGCAGCCTGGCAGATGTTC
GAGTGCCTCCCGGAGCGCCTGCCGACGGCGGCAGCGGCCGCAGAGGTTGA
CGGCGGCATTCGCGGCGGCGGCGACGGCGGCGGAAGCGGCGGTGGCGGTG
GCGACGGTAGTGGCGGCGGTAGGAATGGCGGCGGCGGGTGGGCGGGCCAG
CAGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6242:62..1865-

>mRNA_P-wetherbeei_contig6242.1.1 ID=mRNA_P-wetherbeei_contig6242.1.1|Name=mRNA_P-wetherbeei_contig6242.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1590bp|location=Sequence derived from alignment at P-wetherbeei_contig6242:62..1865- (Phaeothamnion wetherbeei SAG_119_79)
GTCCTCTTGCGGCACCCGCTGGAAGTGTTGGCGGTGCGGTTAGACTTGCT
GCGCCGCATCCCGGAGACGGTGGATCCGGCAACGTACGCCCACCTTTTGC
CCTGCGTGGCGCCGTCCTCTGGCGCCTCGGAAACCGGCGGCGGCACCGGC
ATCGCAGGCGGCGGCGGAGGACCCGCAGGCGCTCCGCCATACTACTGTCT
TGGCGCAAGGAGCGGCGCCCCGGAGCTGGCCGCGGGACTGGGCGGTGGCG
GTGGCGACGGTGGTAGTACAGGCTTCAACGGCGATCATCCTGCTCTGCCC
GGTCTCGAGCCGGAGGGGGCGGCGCCATCGGCAGCGGCTGCAGGCGGCGC
CGTAGCCACCCACGACACGGAGGCGCTCCTGGCGAAGACGCGACAGGTGG
CGCTCTCGCAGTCGGATCCGGGGGTCCTGGCAAGGTGGTACTACGAGCGC
TGTCTCGAAATGGACGCGCTGGGCGGGCAGGTCAAGCACGCGCTCGACAT
GTGCCGGCTAGGGCTGGCCCGCATCGGCGTGGCCGACGAGCGAAGTGCGG
CGATGGCGGTGAGTGGGTTCGGACACGGCGGCAATGGCGGCGGCAACGGT
GATGCTAGCGCTGGTGATGTGCATGGTAGTGGGGGTGGCGGCGGGAATAA
AGCCGTGAAGGGCAAGAGACACAAGAGTTTCGAGGCGGGCAAATCACAGG
GAGCGGCGGCGGGAAGGGCGGGCGAGGGGTGGGAATGGGATGATCTAGAC
GAGCACGAGGACAATGGCGACAAAAACGACGATGCTAGTCATGAATTTGA
AAAGCCTAGCGAAGCATCGCCACTCACCGACGCCAGGGCGGCGGCGATAG
CGGCGGCGGCGGTTGCCGGGGGCCAAAGCAGTTCTGACATGCTGCAGACA
GTGGCGGCCGCGAGTGACGGCGGCTGGCCGGCGCGCCTGCGCCGCCTCTA
CCGCCTCCTCTGGCACCTCGAGACGCTGCTGTACGCCGGCGCGCTGCCGC
CGCTAACGACGGCGGCGGGCTGGATAGCAGCTGGTCGTAGCGGCCGGCTG
CTGGCGGTGCTGGAGCGGTCGACGGTTGAGACGGTCGTGGAGGACGTCCG
TTCGCGGGCGCTGTCGATGTTACGCGGCGACCGCGCCATTCCTGAGGAGG
AAGAAGATGGCGGCCACGGCGGAACCGGCGGAACGGAGCAGGACGACAGC
TGGGCGGAGGAGCTCCTGGCGGACTTTTTGCTGCAAAAAGTTGAGCGCAC
TCCGACTGCCGAGGCGATGGAGCTCTGCGCTGCCGTGGCGGTGGCCAGCC
GACCATTCGTGGTGCAGCCGGAGCTGCGGCTCCTGCGGGACGACGCCCGC
CTCATGCGGCTCGTCCTCGGCGCCTGCTACGCCTGGCGGGACAACCCGCT
GCCCCCGCGCGCACTCGAGGCAGCCTGGCAGATGTTCGAGTGCCTCCCGG
AGCGCCTGCCGACGGCGGCAGCGGCCGCAGAGGTTGACGGCGGCATTCGC
GGCGGCGGCGACGGCGGCGGAAGCGGCGGTGGCGGTGGCGACGGTAGTGG
CGGCGGTAGGAATGGCGGCGGCGGGTGGGCGGGCCAGCAG
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