mRNA_P-wetherbeei_contig6241.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6241.2.1
Unique NamemRNA_P-wetherbeei_contig6241.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6241.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6241contigP-wetherbeei_contig6241:1815..2363 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog35128.Thaps23414
Model size366
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categoryother localisation
Exons2
Evalue0.000156
EggNOG OGs2BWBD@1|root,2RF6U@2759|Eukaryota,2XGN2@2836|Bacillariophyta
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-26_000150.1
DescriptionUcrQ family
Cds size366
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186899.603296-CDS-P-wetherbeei_contig6241:1814..21381683186899.603296-CDS-P-wetherbeei_contig6241:1814..2138Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6241 1815..2138 -
1683186899.6125374-CDS-P-wetherbeei_contig6241:2321..23631683186899.6125374-CDS-P-wetherbeei_contig6241:2321..2363Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6241 2322..2363 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6241.2.1prot_P-wetherbeei_contig6241.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6241 1815..2363 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6241.2.1

>prot_P-wetherbeei_contig6241.2.1 ID=prot_P-wetherbeei_contig6241.2.1|Name=mRNA_P-wetherbeei_contig6241.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=122bp
MVKVWKTFVHQDGMVTRHLSPFEQSIVPPLLKSMPEKVRRNLLKIGSEVT
LRSFDSLAPFLASSPGSESRLLSLLDAVPLFFPSPTHFSLSSPKALMRFK
EHAPYIIPPMLVLVGTIVWMDY
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mRNA from alignment at P-wetherbeei_contig6241:1815..2363-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6241.2.1 ID=mRNA_P-wetherbeei_contig6241.2.1|Name=mRNA_P-wetherbeei_contig6241.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=549bp|location=Sequence derived from alignment at P-wetherbeei_contig6241:1815..2363- (Phaeothamnion wetherbeei SAG_119_79)
ATGGTCAAAGTCTGGAAGACCTTCGTGCACCAGGATGGCATGGTGAGAAC
GCTCTCGCTCTTTGCCTTTCCAAGATACATCGTTCTCGGCATTGCAACGG
CCATACCTTGCTGCGCATTATGTCCTCTAGTTGGTTTCAACCATCCTTCT
CTCGTGATTCTGTTCAATCACTCGCCGGCCTCTTCTGTTGCCCTCTTCTG
TTTGCCACGGTCCCTTTACGTGCAGGTCACTCGCCACTTATCACCGTTTG
AACAATCCATCGTCCCGCCACTCCTTAAGTCAATGCCAGAAAAGGTCAGG
CGAAATTTGTTGAAAATAGGTAGCGAGGTAACGTTGCGCTCCTTCGATTC
TCTCGCCCCTTTCCTGGCCTCGTCTCCTGGCTCGGAATCCCGGCTATTAT
CATTGCTCGACGCTGTGCCGCTCTTCTTCCCTTCTCCAACGCATTTCTCC
CTTTCTTCCCCAAAGGCCTTGATGCGCTTCAAAGAGCACGCCCCCTACAT
CATCCCGCCGATGCTGGTGCTCGTGGGCACCATCGTCTGGATGGACTAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6241:1815..2363-

>mRNA_P-wetherbeei_contig6241.2.1 ID=mRNA_P-wetherbeei_contig6241.2.1|Name=mRNA_P-wetherbeei_contig6241.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=366bp|location=Sequence derived from alignment at P-wetherbeei_contig6241:1815..2363- (Phaeothamnion wetherbeei SAG_119_79)
ATGGTCAAAGTCTGGAAGACCTTCGTGCACCAGGATGGCATGGTCACTCG
CCACTTATCACCGTTTGAACAATCCATCGTCCCGCCACTCCTTAAGTCAA
TGCCAGAAAAGGTCAGGCGAAATTTGTTGAAAATAGGTAGCGAGGTAACG
TTGCGCTCCTTCGATTCTCTCGCCCCTTTCCTGGCCTCGTCTCCTGGCTC
GGAATCCCGGCTATTATCATTGCTCGACGCTGTGCCGCTCTTCTTCCCTT
CTCCAACGCATTTCTCCCTTTCTTCCCCAAAGGCCTTGATGCGCTTCAAA
GAGCACGCCCCCTACATCATCCCGCCGATGCTGGTGCTCGTGGGCACCAT
CGTCTGGATGGACTAC
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