mRNA_P-wetherbeei_contig6233.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6233.2.1
Unique NamemRNA_P-wetherbeei_contig6233.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6233.2.1 vs. uniprot
Match: A0A7S1WED0_ALECA (Hypothetical protein n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1WED0_ALECA)

HSP 1 Score: 133 bits (335), Expect = 4.890e-35
Identity = 67/106 (63.21%), Postives = 78/106 (73.58%), Query Frame = 1
Query:    1 VYARVQREVAGVEATPGTNFAASFSHLAAGGYDAQYYCYLWSEAISCDMFHSRFKAAGIFNPELGMEFRRTVLAPGGSRDAKDLLQDFLGREPSVEPFLRSKGLAG 318
            V A V +E+  V ATPGTN AA+F H+A GGYDAQYY Y+WS+  S DMF SRF   GI +P  G  +R+ +LAPGGSRDA D L+ FLGREP  EPFLRSKGLAG
Sbjct:   76 VLASVSQELLQVPATPGTNMAATFGHMA-GGYDAQYYGYMWSDVFSADMFESRFLKEGILSPTTGASYRKEILAPGGSRDAMDSLKAFLGREPIQEPFLRSKGLAG 180          
BLAST of mRNA_P-wetherbeei_contig6233.2.1 vs. uniprot
Match: A0A6A4TEF6_SCOMX (Peptidase_M3 domain-containing protein n=1 Tax=Scophthalmus maximus TaxID=52904 RepID=A0A6A4TEF6_SCOMX)

HSP 1 Score: 130 bits (327), Expect = 6.980e-34
Identity = 61/103 (59.22%), Postives = 79/103 (76.70%), Query Frame = 1
Query:    4 YARVQREVAGVEATPGTNFAASFSHLAAGGYDAQYYCYLWSEAISCDMFHSRFKAAGIFNPELGMEFRRTVLAPGGSRDAKDLLQDFLGREPSVEPFLRSKGL 312
            Y R+ ++V G+ A+PGTN  A+F HLA GGYDAQYY YLWSE  S DMF++RFK  GI NP++GM++R+ +L PGGS DA ++L+ FLGR+P  E FL SKGL
Sbjct:   65 YGRLCQDVLGIPASPGTNMPATFGHLA-GGYDAQYYGYLWSEVFSMDMFYARFKQEGIMNPKVGMDYRKCILRPGGSEDAAEMLRKFLGRDPKQEAFLLSKGL 166          
BLAST of mRNA_P-wetherbeei_contig6233.2.1 vs. uniprot
Match: A0A672GX74_SALFA (Peptidase_M3 domain-containing protein n=3 Tax=Salarias fasciatus TaxID=181472 RepID=A0A672GX74_SALFA)

HSP 1 Score: 137 bits (345), Expect = 5.350e-33
Identity = 66/104 (63.46%), Postives = 82/104 (78.85%), Query Frame = 1
Query:    4 YARVQREVAGVEATPGTNFAASFSHLAAGGYDAQYYCYLWSEAISCDMFHSRFKAAGIFNPELGMEFRRTVLAPGGSRDAKDLLQDFLGREPSVEPFLRSKGLA 315
            Y R+ RE+ GV A+PGT+  A+F HLA GGYDAQYY YLWSE  S DMF SRFKA G+ NPE+G ++RR VLAPGGS DA+++L++FLGR+P  E FL SKGL+
Sbjct:  593 YGRLSRELLGVAASPGTDMPATFGHLA-GGYDAQYYGYLWSEVFSMDMFQSRFKAQGVMNPEVGRDYRRCVLAPGGSLDAEEMLRNFLGRDPEQEAFLLSKGLS 695          
BLAST of mRNA_P-wetherbeei_contig6233.2.1 vs. uniprot
Match: A0A672G9Y4_SALFA (Peptidase_M3 domain-containing protein n=7 Tax=Salarias fasciatus TaxID=181472 RepID=A0A672G9Y4_SALFA)

HSP 1 Score: 137 bits (345), Expect = 6.300e-33
Identity = 66/104 (63.46%), Postives = 82/104 (78.85%), Query Frame = 1
Query:    4 YARVQREVAGVEATPGTNFAASFSHLAAGGYDAQYYCYLWSEAISCDMFHSRFKAAGIFNPELGMEFRRTVLAPGGSRDAKDLLQDFLGREPSVEPFLRSKGLA 315
            Y R+ RE+ GV A+PGT+  A+F HLA GGYDAQYY YLWSE  S DMF SRFKA G+ NPE+G ++RR VLAPGGS DA+++L++FLGR+P  E FL SKGL+
Sbjct:  662 YGRLSRELLGVAASPGTDMPATFGHLA-GGYDAQYYGYLWSEVFSMDMFQSRFKAQGVMNPEVGRDYRRCVLAPGGSLDAEEMLRNFLGRDPEQEAFLLSKGLS 764          
BLAST of mRNA_P-wetherbeei_contig6233.2.1 vs. uniprot
Match: A0A821QIK8_9NEOB ((mimic poison frog) hypothetical protein n=1 Tax=Ranitomeya imitator TaxID=111125 RepID=A0A821QIK8_9NEOB)

HSP 1 Score: 126 bits (317), Expect = 1.870e-32
Identity = 61/104 (58.65%), Postives = 77/104 (74.04%), Query Frame = 1
Query:    4 YARVQREVAGVEATPGTNFAASFSHLAAGGYDAQYYCYLWSEAISCDMFHSRFKAAGIFNPELGMEFRRTVLAPGGSRDAKDLLQDFLGREPSVEPFLRSKGLA 315
            YA+  +E+ G+ ATPGTN  A+F HLA GGYD QYY YLWSE  S D+F+S FK  GI NPE+G+++R  +L PGGS D  DLL+ FLGREP+ + FL SKGL+
Sbjct:   70 YAKYSQEILGISATPGTNMPATFGHLA-GGYDGQYYGYLWSEVFSMDIFYSCFKQHGIMNPEVGLKYRNLLLKPGGSIDGMDLLRRFLGREPNQKAFLLSKGLS 172          
BLAST of mRNA_P-wetherbeei_contig6233.2.1 vs. uniprot
Match: A0A7S2U0Z3_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2U0Z3_9EUKA)

HSP 1 Score: 129 bits (323), Expect = 2.310e-32
Identity = 58/103 (56.31%), Postives = 80/103 (77.67%), Query Frame = 1
Query:    4 YARVQREVAGVEATPGTNFAASFSHLAAGGYDAQYYCYLWSEAISCDMFHSRFKAAGIFNPELGMEFRRTVLAPGGSRDAKDLLQDFLGREPSVEPFLRSKGL 312
            +A+ Q+++ G+E   GTNFAASF HL  GGYD++YY Y+WSE  S DMF S+FK  GIFNP++GME+R  ++  GGS+DA +LL+DFLG+EPS + FL+ KG+
Sbjct:  154 FAKFQKDIMGIEPMEGTNFAASFGHLM-GGYDSRYYGYMWSEVFSADMFASKFKKEGIFNPKVGMEYRNKIIGKGGSQDADELLRDFLGKEPSNDAFLKQKGV 255          
BLAST of mRNA_P-wetherbeei_contig6233.2.1 vs. uniprot
Match: UPI00155E1612 (thimet oligopeptidase-like n=1 Tax=Etheostoma cragini TaxID=417921 RepID=UPI00155E1612)

HSP 1 Score: 128 bits (321), Expect = 3.470e-32
Identity = 60/103 (58.25%), Postives = 77/103 (74.76%), Query Frame = 1
Query:    4 YARVQREVAGVEATPGTNFAASFSHLAAGGYDAQYYCYLWSEAISCDMFHSRFKAAGIFNPELGMEFRRTVLAPGGSRDAKDLLQDFLGREPSVEPFLRSKGL 312
            Y R+  ++ G+ A+PGTN  A+F HLA GGYDAQYY YLWSE  S DMF +RFK  GI NP++G+++R+ +L PGGS DA ++L+ FLGREP  E FL SKGL
Sbjct:  134 YRRLCEDILGIPASPGTNMPATFGHLA-GGYDAQYYGYLWSEVFSMDMFFARFKQEGIMNPKVGLDYRKFILRPGGSEDASEMLRKFLGREPQQEAFLLSKGL 235          
BLAST of mRNA_P-wetherbeei_contig6233.2.1 vs. uniprot
Match: A0A6S7JNE4_PARCT (Thimet oligopeptidase-like n=3 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7JNE4_PARCT)

HSP 1 Score: 132 bits (331), Expect = 3.700e-32
Identity = 63/104 (60.58%), Postives = 82/104 (78.85%), Query Frame = 1
Query:    1 VYARVQREVAGVEATPGTNFAASFSHLAAGGYDAQYYCYLWSEAISCDMFHSRFKAAGIFNPELGMEFRRTVLAPGGSRDAKDLLQDFLGREPSVEPFLRSKGL 312
            + A++ +E+  + ATPGTN +ASF HLA GGYDAQYY YLWSE  S DMF+SRFK  GI + ++GM++RR +L PGGS DAKD+L++FLGREP+   FL+SKGL
Sbjct:  310 IMAQLSQEIMKIPATPGTNMSASFGHLA-GGYDAQYYGYLWSEVYSMDMFYSRFKEEGIMDSKVGMDYRRCILEPGGSLDAKDMLRNFLGREPNNAAFLKSKGL 412          
BLAST of mRNA_P-wetherbeei_contig6233.2.1 vs. uniprot
Match: UPI00109BE8C9 (thimet oligopeptidase n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI00109BE8C9)

HSP 1 Score: 132 bits (332), Expect = 3.940e-32
Identity = 63/104 (60.58%), Postives = 78/104 (75.00%), Query Frame = 1
Query:    1 VYARVQREVAGVEATPGTNFAASFSHLAAGGYDAQYYCYLWSEAISCDMFHSRFKAAGIFNPELGMEFRRTVLAPGGSRDAKDLLQDFLGREPSVEPFLRSKGL 312
            VYA    ++  + ATPGTN  ASF HLA GGYDAQYY YLWSE    DMFHSRFK  GI + ++GM++R+ +L PGGS+DA D+L+DFLGREP+ + FL SKGL
Sbjct:  337 VYAETSEKILHIPATPGTNMPASFGHLA-GGYDAQYYGYLWSEVFCMDMFHSRFKKEGIMSAKVGMDYRKYILQPGGSKDASDMLKDFLGREPNQDAFLISKGL 439          
BLAST of mRNA_P-wetherbeei_contig6233.2.1 vs. uniprot
Match: A0A1S3FP75_DIPOR (thimet oligopeptidase n=7 Tax=Boreoeutheria TaxID=1437010 RepID=A0A1S3FP75_DIPOR)

HSP 1 Score: 134 bits (338), Expect = 4.460e-32
Identity = 66/108 (61.11%), Postives = 80/108 (74.07%), Query Frame = 1
Query:    4 YARVQREVAGVEATPGTNFAASFSHLAAGGYDAQYYCYLWSEAISCDMFHSRFKAAGIFNPELGMEFRRTVLAPGGSRDAKDLLQDFLGREPSVEPFLRSKGLAGRGA 327
            YA + +E+ GV ATPGTN  A+F HLA GGYDAQYY YLWSE  S DMFH+RFK  G+ NP++GM++R TVL PGGS DA  +L+ FLGREP  + FL SKGL   G+
Sbjct:  576 YAHLCQEILGVPATPGTNMPATFGHLA-GGYDAQYYGYLWSEVFSMDMFHTRFKQEGVLNPKVGMDYRTTVLKPGGSEDASAMLKLFLGREPKQDAFLLSKGLQVEGS 682          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6233.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S1WED0_ALECA4.890e-3563.21Hypothetical protein n=1 Tax=Alexandrium catenella... [more]
A0A6A4TEF6_SCOMX6.980e-3459.22Peptidase_M3 domain-containing protein n=1 Tax=Sco... [more]
A0A672GX74_SALFA5.350e-3363.46Peptidase_M3 domain-containing protein n=3 Tax=Sal... [more]
A0A672G9Y4_SALFA6.300e-3363.46Peptidase_M3 domain-containing protein n=7 Tax=Sal... [more]
A0A821QIK8_9NEOB1.870e-3258.65(mimic poison frog) hypothetical protein n=1 Tax=R... [more]
A0A7S2U0Z3_9EUKA2.310e-3256.31Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]
UPI00155E16123.470e-3258.25thimet oligopeptidase-like n=1 Tax=Etheostoma crag... [more]
A0A6S7JNE4_PARCT3.700e-3260.58Thimet oligopeptidase-like n=3 Tax=Paramuricea cla... [more]
UPI00109BE8C93.940e-3260.58thimet oligopeptidase n=1 Tax=Exaiptasia diaphana ... [more]
A0A1S3FP75_DIPOR4.460e-3261.11thimet oligopeptidase n=7 Tax=Boreoeutheria TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6233contigP-wetherbeei_contig6233:2234..3407 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size828
Hectar predicted targeting categorymitochondrion
Exons3
Cds size543
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186898.965401-UTR-P-wetherbeei_contig6233:2233..25141683186898.965401-UTR-P-wetherbeei_contig6233:2233..2514Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6233 2234..2514 -
1683186899.016369-UTR-P-wetherbeei_contig6233:3403..34071683186899.016369-UTR-P-wetherbeei_contig6233:3403..3407Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6233 3404..3407 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186898.97709-CDS-P-wetherbeei_contig6233:2514..28721683186898.97709-CDS-P-wetherbeei_contig6233:2514..2872Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6233 2515..2872 -
1683186898.9876018-CDS-P-wetherbeei_contig6233:3028..31121683186898.9876018-CDS-P-wetherbeei_contig6233:3028..3112Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6233 3029..3112 -
1683186899.0028336-CDS-P-wetherbeei_contig6233:3302..34031683186899.0028336-CDS-P-wetherbeei_contig6233:3302..3403Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6233 3303..3403 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6233.2.1prot_P-wetherbeei_contig6233.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6233 2515..3403 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6233.2.1

>prot_P-wetherbeei_contig6233.2.1 ID=prot_P-wetherbeei_contig6233.2.1|Name=mRNA_P-wetherbeei_contig6233.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=181bp
MRGSSGRWRASRRLRAQTLLRASATSRPEAMTRSIIAICGARQFRATCST
RASRQPASSTPSSAWSSAARCSRPAVRAMPRTCCRISSDANRPSSPSSGA
RGLRDAAQRHGGGNNGSGNCRGTSQQERRRWWLSQLQRMWRAAWHRGAER
CRGRGAMQGMLCPLESGAVPGRSGRHDVHT*
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mRNA from alignment at P-wetherbeei_contig6233:2234..3407-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6233.2.1 ID=mRNA_P-wetherbeei_contig6233.2.1|Name=mRNA_P-wetherbeei_contig6233.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1174bp|location=Sequence derived from alignment at P-wetherbeei_contig6233:2234..3407- (Phaeothamnion wetherbeei SAG_119_79)
GTGTATGCGAGGGTCCAGCGGGAGGTGGCGGGCGTCGAGGCGACTCCGGG CACAAACTTTGCTGCGAGCTTCAGCCACCTCGCGGCCGGAGGCTATGACG CGCAGGTGGGAGACGTAGCGGGCTGCGAGAAAGCAGATTTCGGCGGAAGG AGGAGAGCGGAATCGTCAGTCAGCTTTCTTTCCTTCCAATTTATGTGCGG CCTGCCATTTGTAGTGAAGTGTCCCCCCTGACTTATCCGCGTCCACCTGG TTGCTGCGACCATTTTGTTCCCTCTTCCCGCTTTCTTGCCTGCAGTATTA TTGCTATTTGTGGAGCGAGGCAATTTCGTGCGACATGTTCCACTCGCGCT TCAAGGCAGCCGGCATCTTCAACCCCGAGGTGATTCTCCAATTTGGTGCG GGTTGATGGGACATAGAAGGAAAGAGATTCTCTTACCTGTTGCTGCTCAT GTGTTACCTCTTCGGCTAACCATTCTCCCTGCTGACGGGTGCGGCACAAT TTTGCGTGTTCTCCCACCTTGCGTTTGCTACACAGCTCGGCATGGAGTTC CGCCGCACGGTGCTCGCGCCCGGCGGTTCGCGCGATGCCAAGGACCTGCT GCAGGATTTCCTCGGACGCGAACCGTCCGTCGAGCCCTTCCTCCGGAGCA AGGGGCTTGCGGGACGCGGCGCAGCGGCACGGCGGCGGCAACAACGGCAG TGGCAATTGCCGTGGTACGTCGCAGCAGGAGCGGCGGCGGTGGTGGCTGT CACAGTTGCAGCGCATGTGGCGCGCGGCGTGGCATCGCGGCGCTGAGCGG TGCAGGGGGCGCGGTGCGATGCAAGGGATGCTATGCCCCCTCGAGTCTGG TGCAGTCCCGGGCAGGAGCGGCCGGCACGATGTGCACACGTGATGACAAA TCTCAGAAGAAGCAAGTACTTTGCTTTGGCAGCAAAATTGATTTGTACAA ATGGTGATTTCTCGGCGGCGACGCATGCGAGCGCCGCCGTCGCCGAACAA GTACAAGCTGCGGTTTAAAGAGAAAAGGAGCAAGTCAGCTGTTTGACGTC ATAGACCGCGGCGGTAGAGACTTGGCCGGAAAGGCGTGGCCAGCCTTCAA GAATAATGGCCTTCGGCATTTTAGATGGATTGCACCTGGCTGATGCATAG GATCATAAATCGAAAACCTACCAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6233:2234..3407-

>mRNA_P-wetherbeei_contig6233.2.1 ID=mRNA_P-wetherbeei_contig6233.2.1|Name=mRNA_P-wetherbeei_contig6233.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=543bp|location=Sequence derived from alignment at P-wetherbeei_contig6233:2234..3407- (Phaeothamnion wetherbeei SAG_119_79)
ATGCGAGGGTCCAGCGGGAGGTGGCGGGCGTCGAGGCGACTCCGGGCACA
AACTTTGCTGCGAGCTTCAGCCACCTCGCGGCCGGAGGCTATGACGCGCA
GTATTATTGCTATTTGTGGAGCGAGGCAATTTCGTGCGACATGTTCCACT
CGCGCTTCAAGGCAGCCGGCATCTTCAACCCCGAGCTCGGCATGGAGTTC
CGCCGCACGGTGCTCGCGCCCGGCGGTTCGCGCGATGCCAAGGACCTGCT
GCAGGATTTCCTCGGACGCGAACCGTCCGTCGAGCCCTTCCTCCGGAGCA
AGGGGCTTGCGGGACGCGGCGCAGCGGCACGGCGGCGGCAACAACGGCAG
TGGCAATTGCCGTGGTACGTCGCAGCAGGAGCGGCGGCGGTGGTGGCTGT
CACAGTTGCAGCGCATGTGGCGCGCGGCGTGGCATCGCGGCGCTGAGCGG
TGCAGGGGGCGCGGTGCGATGCAAGGGATGCTATGCCCCCTCGAGTCTGG
TGCAGTCCCGGGCAGGAGCGGCCGGCACGATGTGCACACGTGA
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