mRNA_P-wetherbeei_contig6227.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6227.1.1
Unique NamemRNA_P-wetherbeei_contig6227.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig6227.1.1 vs. uniprot
Match: A0A836CKI6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKI6_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 1.100e-13
Identity = 113/353 (32.01%), Postives = 135/353 (38.24%), Query Frame = 2 
Query:  122 LRLVDLQRRVAATASAKEXXXXCLGAGADDSNXXXXXXXXXXXGYNG-GVRHKYEQLLESRQRVVALAEXXXXXXXXXXXXXXRRRQQLERFRRLQDQMLAPPGLETAAPLSAVGNETSAAAAEGSSTAGAALAGASRGSRTAPACEMQLAAEWKVPADKRRGRAALRAHEHAAAAARGGERWWVVRLPEDAGAPPVDVRRVVSPWPFPT-AAAGGGFGNRGGKGSSVTARITVASPAPGLDPAA-VGLYDDDEASLWWHAYARKGGSGGG---------ARADETATLLLERVKLGPMARAAAVEADVQRRRLAVRRNADILVEQVRGRKARLFQRSAPGGRPSCRFVLLKV 1144
            +RL +LQ  VAA + AK        A                 G  G G R  YE LLE R+R+  L         XXXXXXX       R R LQ Q+L PP L  +A                    GAA AG                A W +PA+      A RAH   A A  G ERWW V    D  APP+D+R VVSPWPF     +GG                  A   P LD  A      + EASLWW++YAR                 R DETA  L +R+ LGP A        VQRR   + RNA  +  QV   +     +  PG R       L+ 
Sbjct:  766 MRLAELQHAVAAASLAKATRRASSAAANGFPADRMAAGGTHASGSCGSGPRRAYEGLLERRERLAQLRSERAAAEAXXXXXXXXXXXXXXRCRVLQQQLLRPPPLPRSA--------------------GAAAAGPW--------------ARW-LPAEPAALARAERAHRSTAGAVLGEERWWRVHSVADPSAPPIDLRSVVSPWPFQQWRGSGGXXXXXXXXXXXXXXXXXXALQRPALDEHANEARMSETEASLWWYSYARSXXXXXXXXXXXXXXXGRQDETAAALHKRLLLGPSAWHEETARAVQRRHAGIARNAAAMAAQVMEMRRLRALQGGPGARRQAAATTLQA 1083
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BLAST of mRNA_P-wetherbeei_contig6227.1.1 vs. uniprot
Match: D7FVD6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVD6_ECTSI)

HSP 1 Score: 69.7 bits (169), Expect = 1.540e-8
Identity = 74/240 (30.83%), Postives = 103/240 (42.92%), Query Frame = 2 
Query:  368 RRRQQLERFRRLQDQMLAPPGLETAAPLSAVGNETSAAAAEGSSTAGAALAGASRGSRTAPACEMQLAAEWKVPADKRRGRAALRAHEHAAAAAR-GGERWWVVRLPEDAGAPP--VDVRRVVSPWPFPTAAAGGGFGNRGGKGSS--VTARITVASPAPGLDPAAVGLYDDDEASLWWHAYARKGGSGGGARADETATL--LLERVKLGPMARAAAVEADVQRRRLAVRRNADILVEQV 1066
            RR  +L  FR+LQDQ+L PP L +    S      SA   EGS              R     +  +   W    D  +   A RAH+ A AAA+  G + W   LP D G     +D+RR+V  WP  T          GG+G+   V   I     + G        +D DEASLWW+ Y+  G    G + ++      LLER K  P  R    E D Q+ +L V R   I+++++
Sbjct:  144 RRSTRLANFRKLQDQLLRPPKLNSTGRTS-----VSAKRREGSQ-------------RHQMVMDTAVDKNWYETEDPAQRDRAQRAHKLALAAAKDSGIKPWATSLPSDVGGYDDLLDIRRLVPAWPTHTV---------GGRGALDFVDGFIRNQHTSDGGSGTGDRKFDSDEASLWWYVYSTNGAQTSGLQQEQDGVFVELLERAKTTPKRRKEHAERDEQQHQLMVARKRQIIIDKM 356
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BLAST of mRNA_P-wetherbeei_contig6227.1.1 vs. uniprot
Match: A0A7S3UQU5_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UQU5_HETAK)

HSP 1 Score: 64.7 bits (156), Expect = 3.260e-8
Identity = 48/130 (36.92%), Postives = 62/130 (47.69%), Query Frame = 2 
Query:  680 LPEDAGAPPVDVRRVVSPWPFPTAAAGGGFGNRGGKGSSVTARITVASPAPGLDPAAVGLYDDDEASLWWHAYARKGGSGGGARADETATLLLERVKLGPMARAAAVEADVQRRRLAVRRNADILVEQVR 1069
            LPEDAG PPVD+R+VV+P PF             G          V  P  G        YDD EASLWW+AY+RKG         E+  LLLE+ ++GPM      + +VQ  +  +   A+ LV   R
Sbjct:    4 LPEDAGGPPVDIRKVVAPVPFSDFV---------GSSDPSIKNDEVFQPMDGR-------YDDKEASLWWYAYSRKGREEPIKEGVES-DLLLEKARMGPMLAQRLADQEVQDEQDQISAAAERLVSAAR 116
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6227.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A836CKI6_9STRA1.100e-1332.01Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7FVD6_ECTSI1.540e-830.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S3UQU5_HETAK3.260e-836.92Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6227contigP-wetherbeei_contig6227:2..3518 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size3163
Hectar predicted targeting categoryother localisation
Exons2
Cds size810
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186898.6022103-UTR-P-wetherbeei_contig6227:1..15591683186898.6022103-UTR-P-wetherbeei_contig6227:1..1559Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6227 2..1559 -
1683186898.6128633-UTR-P-wetherbeei_contig6227:1913..22961683186898.6128633-UTR-P-wetherbeei_contig6227:1913..2296Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6227 1914..2296 -
1683186898.6327572-UTR-P-wetherbeei_contig6227:3106..35181683186898.6327572-UTR-P-wetherbeei_contig6227:3106..3518Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6227 3107..3518 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186898.6231482-CDS-P-wetherbeei_contig6227:2296..31061683186898.6231482-CDS-P-wetherbeei_contig6227:2296..3106Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6227 2297..3106 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6227.1.1prot_P-wetherbeei_contig6227.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6227 2297..3106 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6227.1.1

>prot_P-wetherbeei_contig6227.1.1 ID=prot_P-wetherbeei_contig6227.1.1|Name=mRNA_P-wetherbeei_contig6227.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=270bp
MLAPPGLETAAPLSAVGNETSAAAAEGSSTAGAALAGASRGSRTAPACEM
QLAAEWKVPADKRRGRAALRAHEHAAAAARGGERWWVVRLPEDAGAPPVD
VRRVVSPWPFPTAAAGGGFGNRGGKGSSVTARITVASPAPGLDPAAVGLY
DDDEASLWWHAYARKGGSGGGARADETATLLLERVKLGPMARAAAVEADV
QRRRLAVRRNADILVEQVRGRKARLFQRSAPGGRPSCRFVLLKVGFHYLH
GACLCQRSFLSRDWIGLPL*
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mRNA from alignment at P-wetherbeei_contig6227:2..3518-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6227.1.1 ID=mRNA_P-wetherbeei_contig6227.1.1|Name=mRNA_P-wetherbeei_contig6227.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=3517bp|location=Sequence derived from alignment at P-wetherbeei_contig6227:2..3518- (Phaeothamnion wetherbeei SAG_119_79)
GGGAGCGGCGGCAGGAGGTGGCATCGGCGGCGATGGCAGTCCCCGGCGGC
GCGTCGACGCTAAGCTGCTCCTGCATCGAAGAGGGAGCGACGCTCGGCCG
CCGGCGGCGACGGTCGCCGAATTGCGTCTGGTCGACCTGCAGCGGCGGGT
GGCTGCCACTGCCAGCGCCAAGGAGCGGCGCCGCCGGTGTCTCGGTGCCG
GCGCGGACGATTCCAACGGCGCCGGCGATAGCACCAGTTACGGCGGCGGC
GGTTACAACGGCGGCGTGCGGCACAAATACGAGCAGCTGCTTGAGAGCCG
CCAACGCGTGGTAGCGCTGGCGGAGGCGGCGGCCGCCGCCGGCGCGGCAC
GTGCCGACGCCACTGCCCGCCGCCGCCAACAGCTGGAGCGCTTCCGGCGG
CTCCAGGACCAGATGCTGGCCCCGCCGGGGCTAGAGACCGCTGCGCCGCT
CTCAGCTGTTGGCAACGAAACGTCGGCGGCGGCGGCGGAAGGTTCTTCAA
CGGCGGGAGCGGCGCTCGCCGGCGCCAGCCGCGGCTCCCGCACCGCTCCG
GCGTGTGAGATGCAGCTCGCCGCCGAATGGAAGGTGCCTGCGGACAAGCG
CCGTGGGCGTGCGGCACTGCGGGCGCATGAGCATGCGGCAGCGGCAGCGC
GCGGCGGCGAGCGGTGGTGGGTGGTGCGGCTGCCGGAGGATGCCGGTGCG
CCGCCGGTCGACGTCCGGCGCGTCGTGTCGCCGTGGCCTTTTCCCACTGC
CGCAGCAGGAGGCGGATTTGGAAACCGGGGAGGCAAAGGATCATCAGTTA
CGGCGAGAATAACTGTCGCGTCGCCGGCCCCGGGGCTCGATCCCGCGGCG
GTCGGGCTTTACGACGACGACGAGGCGTCCCTGTGGTGGCATGCCTACGC
CCGCAAAGGCGGCAGCGGTGGTGGAGCACGGGCGGACGAGACGGCGACAT
TGCTGCTGGAGCGGGTGAAGCTGGGGCCGATGGCGCGGGCGGCGGCCGTC
GAGGCGGACGTCCAGCGTCGCCGCCTCGCGGTCCGCCGCAACGCCGACAT
CTTGGTGGAGCAGGTGAGAGGGAGGAAGGCTCGGCTGTTTCAACGCTCTG
CTCCAGGAGGAAGGCCCAGTTGCCGCTTTGTCTTGCTTAAGGTCGGTTTT
CACTATCTGCACGGGGCCTGTCTCTGTCAAAGATCCTTTCTTTCCAGGGA
TTGGATTGGCCTTCCGTTGTGAAAGGCGTTTGAGTTCGAACCTTTTCGCT
CCGCTTGGAAACATTTATCCAGCATATCTTCCTATGTGCTCTCTACAAGC
GAAAGCCGTCAGCCAACACGCACCGGCCCATAGACTCCCGCAGACCGGCA
CACACTGCCTATTAGCCGCTTTTGCCAACCGCCACCACGTTTTGCCACCG
ATGGTCAGTCCCGCTCCTCTAATTTTTTCAGGTGCTCCAGCGGCGGCGGG
ACGCGACCGCACTGTCCGCGGACGACCTGGTGGCGGGCGGCGCCGTCCGG
CGGCGGCGGGCCGCCACCGCCATCCAGGCGCGAGCGCGGGGCATGGCGGC
ACGCCGCGAGGCGGCTGCGCTGCGAGCCGAGCTGCGGGTGTACGGCGCGC
TCCAGGTCCGTTTCCTTTGGGTGCTGCTGGGATGTCTAGCCAGTTTTTCG
TTGGCTTTATTGGCCGTAATATTGGGCTGTTTAGCCAGGTGTGGTCGTCA
GAGTATCCTTCTTTAGGACGTTAGAGAAACGTCTTTATGTCTTGCTGCGG
CTGCTGCATGTTCGCTGTTCGACAACGCCCTGGCTCGCCACCTGCTGGGT
GCCTGCCACCTACCTGGTTTCGCCTCGCTCTTCTTTGCTTGCTTAACGAT
TGGCCTGAGTTCTGCTCCTTTTCCCTTCCTGATTTTTCTCCTTACAGTTC
TCGTTGACCTTTCACAAAACCTCTTTTTCTTGCCCGCCGCTTCTTTCGCC
CTCCCTCAGGTGCTGGTGGAGGAGCTGCGGCAGCCGGCACTGGAACGCGA
CATGGCGACAAATATCGCCGCCATCCTCGTCGACCACGCCGGCGGCACCC
GTGCAGCTGCCGACGCTGCCGTCACCGGTGCCGGCGCCGCCGCGGGTGTC
AGGGCCGCCGCCATGGTCAAGGGCCGCGGTCGGCGGCGGCCGTCGGGTGA
CGCGGCGGTGGCGGCGGCGGCGGGGGTAGCGGCAGGAGCTGCAGGAGCTG
CACGATATTCAGCGGCGCCTGATCCGGTGGTGGCTGGGGCGGCAGCGGCA
CCTGCGGTGGGTTCAATTTCTGCAGTGGCTTTGGCGGCACCAACGGCGGT
TTTGGCGGCGCCAGCGGCGGCGGCGATGCCAGTTGGGCCGGGAGGCGAGG
AGAAAGGTCTATCATCAGCAGCTGTTCCGGCTTCGGTGCGAACGGCATTG
ATGCAATCAGCTGTAATGGCAGCACCGGACCAAACCGATACGACAACGGC
AAGGCCAATCGGCGCAGCCATCGCTGCGAACGCTGCAGCCCCGCCGGCGT
TCGACCTGCTGCCGCCCCAACCAGGACTGCTTGCGTCCGCAGCAGCGGGC
GCCCGGGAGGCAGCGACAGCGATCCAGGCGCGATTCCGAGGCTACAGAGC
AAGGGCTAGGCAGCCAGCTGTTGCGTCGACAGCGGCGCAAGCAAAGGAAA
CTGCGGCTTCTTGTCTGCCTCGAAAGATCTTCTGATCCCGGCCTCTTAGA
CGCTCCAGACTGGAGTGAGCTATCCAGGGCAGCAGTACCTTCGGCGAAAG
CCACGGCGGCGTAGCTTCGCTGGTTCTTTCTGTTGGTAGGGGCGCCGCCC
TCTGGCAAAGTGCGCGGACCCGGGGTAGCTTTTCACACGAGGGACCCGAC
AAGGTTTCCGATCGCCAAGGGGGGTGCAGGGTCGGGCTCTCCCCCTTTAC
CTCTCATTTGGAGCGGGTGGGGACTGAAAGTAAAGCCAGCCAGGCTATCT
CACGTTGGATTTGCTCACCGAAAACCCTTCTGACTTCGGGAAGGGAAAAT
TGGGCTCAAATAGAGAGAGAGAGAGAGAGTACACGAGCAGACTGACCTTT
CGATGTGCCGTGAAAAGATAATCACCTCCCACCACGTCATGGGTCGCGTC
GCAGAGAGAGGACATTAAAAACCGCCCTTGTTCTCGCTTCGACTCGCCTC
TTCGTTCTTGGAGTAACCACGGCGAGTGGAGCTCTTTCAACAAGAACCGC
CTTCAAAACCCATTTCCAGACACTCTCCTCGACCCGTTCCCGGCATAAAG
GTAAAACCTCCGCCACAAAATAGCGATGCCTCTCACGGCTTCAATAGGGG
AGCTTCTGACCCTCGCGGACGCCGCGGCGTTTGGCGGCCGATCGATCCGA
AGACGGATCATCGCCGCGCCGGCTGGGATCAACAAGCCTAAGAAGCGGAA
GCAAGAACTGGCCGTGGTTGCAGGTACAGCCCTCCCATCTAAGACGCTCG
CCTTCCTCACTTTCTCCGACTTGGCGTCTCTGGGCTCGGTAACGACCACT
ATCCGCGACGGTGTCCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6227:2..3518-

>mRNA_P-wetherbeei_contig6227.1.1 ID=mRNA_P-wetherbeei_contig6227.1.1|Name=mRNA_P-wetherbeei_contig6227.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=810bp|location=Sequence derived from alignment at P-wetherbeei_contig6227:2..3518- (Phaeothamnion wetherbeei SAG_119_79)
ATGCTGGCCCCGCCGGGGCTAGAGACCGCTGCGCCGCTCTCAGCTGTTGG
CAACGAAACGTCGGCGGCGGCGGCGGAAGGTTCTTCAACGGCGGGAGCGG
CGCTCGCCGGCGCCAGCCGCGGCTCCCGCACCGCTCCGGCGTGTGAGATG
CAGCTCGCCGCCGAATGGAAGGTGCCTGCGGACAAGCGCCGTGGGCGTGC
GGCACTGCGGGCGCATGAGCATGCGGCAGCGGCAGCGCGCGGCGGCGAGC
GGTGGTGGGTGGTGCGGCTGCCGGAGGATGCCGGTGCGCCGCCGGTCGAC
GTCCGGCGCGTCGTGTCGCCGTGGCCTTTTCCCACTGCCGCAGCAGGAGG
CGGATTTGGAAACCGGGGAGGCAAAGGATCATCAGTTACGGCGAGAATAA
CTGTCGCGTCGCCGGCCCCGGGGCTCGATCCCGCGGCGGTCGGGCTTTAC
GACGACGACGAGGCGTCCCTGTGGTGGCATGCCTACGCCCGCAAAGGCGG
CAGCGGTGGTGGAGCACGGGCGGACGAGACGGCGACATTGCTGCTGGAGC
GGGTGAAGCTGGGGCCGATGGCGCGGGCGGCGGCCGTCGAGGCGGACGTC
CAGCGTCGCCGCCTCGCGGTCCGCCGCAACGCCGACATCTTGGTGGAGCA
GGTGAGAGGGAGGAAGGCTCGGCTGTTTCAACGCTCTGCTCCAGGAGGAA
GGCCCAGTTGCCGCTTTGTCTTGCTTAAGGTCGGTTTTCACTATCTGCAC
GGGGCCTGTCTCTGTCAAAGATCCTTTCTTTCCAGGGATTGGATTGGCCT
TCCGTTGTGA
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