mRNA_P-wetherbeei_contig6218.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6218.1.1
Unique NamemRNA_P-wetherbeei_contig6218.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6218.1.1 vs. uniprot
Match: A0A7S1G2R6_9STRA (Glycerophosphocholine acyltransferase 1 n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G2R6_9STRA)

HSP 1 Score: 133 bits (334), Expect = 1.530e-34
Identity = 76/195 (38.97%), Postives = 110/195 (56.41%), Query Frame = 1
Query:   88 KALPFLYVAEVTTLVTIRFFVYYRQHWHHFLLDFCYVVNACLVLYIVFFPKSQRLFVVTFGMANGTAAWGGILFRNALQFHDLQKMTSCYIHLLPATVCYALRWMSNDSRYALCRNS---LGCPPFASAFWHMAAPVLVWCV-----------------------HALLHGLWVFVMPHHHLRSAPGYTNTFLYL 594
            + LP++Y+AE+  LV+IR   YY+ HWH+F LDFCY  NA LV Y++FFP S+RLFVV F +A+G   +  + +RN+L  H L KMTSC+IH+ P  V +ALRW +  + ++ C ++   L  P  AS+    AAP  +W +                       H LL+ L V V+P+  LR    Y  ++ YL
Sbjct:   16 RVLPYVYIAELLLLVSIRLVYYYQLHWHYFCLDFCYFGNATLVAYLLFFPHSERLFVVCFAIAHGPLLFAVVAYRNSLVPHSLDKMTSCFIHIAPPIVLFALRWHA-VAGWSTCAHADLVLDLPQRASSPAAPAAPAALWTLEDVCESPGSLVWLLVVPMAAFAGHQLLYFLIVQVLPNKTLREDKTYLTSYRYL 209          
BLAST of mRNA_P-wetherbeei_contig6218.1.1 vs. uniprot
Match: UPI0003F0C0ED (uncharacterized protein LOC102805840 n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0003F0C0ED)

HSP 1 Score: 116 bits (291), Expect = 4.520e-28
Identity = 63/187 (33.69%), Postives = 97/187 (51.87%), Query Frame = 1
Query:   43 FFVIRTSFVFWLLD----SKALPFLYVAEVTTLVTIRFFVYYRQHWHHFLLDFCYVVNACLVLYIVFFPKSQRLFVVTFGMANGTAAWGGILFRNALQFHDLQKMTSCYIHLLPATVCYALRWMSNDSRYALCRNSLGCPPFASAFWHMAAPVLVWCVHALLHGLWVFVMPHHHLRSAPGYTNTFLY 591
            F +  TS V W          LP+ Y   +  LV IR ++Y+ + W  FLLDFCY  NA  ++YI   P  + +F++ F +ANG   W  +++RN+L FH L KMTS +IHLLPA + + LRW          R  +  PP     W +  P+   C+  + HGL   ++ H  ++ +  Y +++ Y
Sbjct:  118 FLISVTSLVLWAYGLFNYHWLLPYYYTVVLPLLVAIRVWIYWTKKWQWFLLDFCYFANAMTMIYIWVIPNHEFMFMLVFALANGPLIWAILIYRNSLVFHSLDKMTSVFIHLLPAYLSFGLRWYPESISLHWYRPFVIDPPPPDFIWLVVVPLS--CI--VFHGLVYLILVHLLIKPSEDYLDSYRY 300          
BLAST of mRNA_P-wetherbeei_contig6218.1.1 vs. uniprot
Match: V4BQD1_LOTGI (Glycerophosphocholine acyltransferase 1 n=1 Tax=Lottia gigantea TaxID=225164 RepID=V4BQD1_LOTGI)

HSP 1 Score: 108 bits (269), Expect = 8.770e-25
Identity = 54/158 (34.18%), Postives = 87/158 (55.06%), Query Frame = 1
Query:   94 LPFLYVAEVTTLVTIRFFVYYRQHWHHFLLDFCYVVNACLVLYIVFFPKSQRLFVVTFGMANGTAAWGGILFRNALQFHDLQKMTSCYIHLLPATVCYALRWMSNDSRYALCRNSLGCPPFASAFWHMAAPVLVWCVHALLHGLW--VFVMPHHHLRS 561
            LP+ Y      L+ IR  +Y++  W++FLLDFCY  N    L++  +P+   +F+ +F +ANG   W  ++FRN+L  H + K+TS YIH LPA + +ALRW S D+     ++ +      S  W +  P L + +H++L      +F  P  +L S
Sbjct:   89 LPYYYTISTPCLLLIRTIIYWKYKWNYFLLDFCYYGNVLWYLFLWIWPQHGNIFMASFAVANGPLLWAAVIFRNSLVLHSVDKVTSVYIHTLPAFLSFALRWYSEDTSMKWRKDFVPDINNWSVQWLIVVPFLGFVLHSILXXXLTSIFPPPEEYLTS 246          
BLAST of mRNA_P-wetherbeei_contig6218.1.1 vs. uniprot
Match: UPI001E1D3293 (glycerophosphocholine acyltransferase 1-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D3293)

HSP 1 Score: 106 bits (265), Expect = 2.690e-24
Identity = 55/167 (32.93%), Postives = 88/167 (52.69%), Query Frame = 1
Query:   94 LPFLYVAEVTTLVTIRFFVYYRQHWHHFLLDFCYVVNACLVLYIVFFPKSQRLFVVTFGMANGTAAWGGILFRNALQFHDLQKMTSCYIHLLPATVCYALRWMSNDSRYALCRNSLGCPPFASAFWHMAAPVLVWCVHALLHGLWVFVMPHHHLRSAPGYTNTFLYL 594
            LPF+Y      LV I+   Y+R  W +F++DFCY  N   ++Y+ +FP  + LF V F +ANG       ++RN+L +H   K+TSCYIH LPA + +++RW    +     +  +   P     W  AAP   + +H+ L+ L V ++    +R    Y  ++ YL
Sbjct:   79 LPFIYATSTPILVGIKTICYWRYKWQYFMVDFCYFANTLTLIYL-WFPGEEDLFRVVFALANGPVLVAAAVYRNSLVYHHHDKITSCYIHFLPALLTFSIRWFPESTSRFWIKPFISDTPAFDIVWLYAAPFAFFFLHSALYCLIVNIV----VRPKEPYVTSYSYL 240          
BLAST of mRNA_P-wetherbeei_contig6218.1.1 vs. uniprot
Match: A0A3P3Y9P7_PLABS (Glycerophosphocholine acyltransferase 1 n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A3P3Y9P7_PLABS)

HSP 1 Score: 107 bits (268), Expect = 4.480e-24
Identity = 45/108 (41.67%), Postives = 69/108 (63.89%), Query Frame = 1
Query:  106 YVAEVTTLVTIRFFVYYRQHWHHFLLDFCYVVNACLVLYIVFFPKSQRLFVVTFGMANGTAAWGGILFRNALQFHDLQKMTSCYIHLLPATVCYALRWMSNDSRYALC 429
            Y   +  L+++R ++Y ++ + +FL+DFCY     + +Y+  +PKS  LFV  F  ANG  AW   L+RN+L FHDL K+TSC IH+LP  + + LRW  +DS  ++C
Sbjct:  144 YTYLIVLLISLRIYLYRKEGYQYFLIDFCYFTTGLVYMYLYLYPKSSTLFVHVFAFANGPLAWAVPLWRNSLVFHDLDKLTSCAIHILPMLLTFQLRWFPSDSSLSIC 251          
BLAST of mRNA_P-wetherbeei_contig6218.1.1 vs. uniprot
Match: A0A0G4IHJ4_PLABS (Glycerophosphocholine acyltransferase 1 (Fragment) n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4IHJ4_PLABS)

HSP 1 Score: 107 bits (268), Expect = 5.960e-24
Identity = 45/108 (41.67%), Postives = 69/108 (63.89%), Query Frame = 1
Query:  106 YVAEVTTLVTIRFFVYYRQHWHHFLLDFCYVVNACLVLYIVFFPKSQRLFVVTFGMANGTAAWGGILFRNALQFHDLQKMTSCYIHLLPATVCYALRWMSNDSRYALC 429
            Y   +  L+++R ++Y ++ + +FL+DFCY     + +Y+  +PKS  LFV  F  ANG  AW   L+RN+L FHDL K+TSC IH+LP  + + LRW  +DS  ++C
Sbjct:  195 YTYLIVLLISLRIYLYRKEGYQYFLIDFCYFTTGLVYMYLYLYPKSSTLFVHVFAFANGPLAWAVPLWRNSLVFHDLDKLTSCAIHILPMLLTFQLRWFPSDSSLSIC 302          
BLAST of mRNA_P-wetherbeei_contig6218.1.1 vs. uniprot
Match: UPI001CFDC4A5 (uncharacterized protein n=1 Tax=Naegleria lovaniensis TaxID=51637 RepID=UPI001CFDC4A5)

HSP 1 Score: 105 bits (263), Expect = 6.790e-24
Identity = 49/128 (38.28%), Postives = 76/128 (59.38%), Query Frame = 1
Query:   49 VIRTSFVFWLLDSKALPFLYVAEVTTLVTIRFFVYYRQHWHHFLLDFCYVVNACLVLYIVFFPKSQRLFVVTFGMANGTAAWGGILFRNALQFHDLQKMTSCYIHLLPATVCYALRWMSND-SRYALC 429
            ++ T+F+F     K LP  Y   +  L+  RFF ++ QH H+F++DFCY+ N  L++Y+ F+P S +LF +TF   NG   +  + +RN+L FHD  K+TSC+IH  P  + +A+RW       Y  C
Sbjct:   72 LVSTTFIFGY-APKWLPQWYALWMVPLMIYRFFDFHAQHAHYFMIDFCYIGNLALMIYLFFYPTSPQLFALTFANNNGPILFAIVFWRNSLVFHDWDKLTSCFIHTFPPLISFAIRWFPEQFPEYTTC 198          
BLAST of mRNA_P-wetherbeei_contig6218.1.1 vs. uniprot
Match: A0A210QSJ2_MIZYE (Glycerophosphocholine acyltransferase 1 n=2 Tax=Mizuhopecten yessoensis TaxID=6573 RepID=A0A210QSJ2_MIZYE)

HSP 1 Score: 104 bits (259), Expect = 1.990e-23
Identity = 49/137 (35.77%), Postives = 79/137 (57.66%), Query Frame = 1
Query:    7 PSKKHLGGLTYAFFVIRTSFVFWLLDSKAL------PFLYVAEVTTLVTIRFFVYYRQHWHHFLLDFCYVVNACLVLYIVFFPKSQRLFVVTFGMANGTAAWGGILFRNALQFHDLQKMTSCYIHLLPATVCYALRW 399
            P++K    L    + + T  V   L   AL      P  Y   +  +++IR F+Y++  WH+FLLDFCY  N    ++I +   S R+F V FG+ANG   W  +++RN+L FH+  K++S +IH++P T+ +A+RW
Sbjct:   36 PTQKKKSRLREKLYHVFTVVVLVTLSHLALHAQWLLPIFYAISLPIVISIRIFIYFKNKWHYFLLDFCYYANLAWFIFI-WIADSPRMFAVVFGIANGPLLWAMVVYRNSLVFHNHDKVSSSFIHIVPGTLSFAIRW 171          
BLAST of mRNA_P-wetherbeei_contig6218.1.1 vs. uniprot
Match: A0A6A5BIY4_NAEFO (Glycerophosphocholine acyltransferase 1 n=1 Tax=Naegleria fowleri TaxID=5763 RepID=A0A6A5BIY4_NAEFO)

HSP 1 Score: 104 bits (259), Expect = 2.530e-23
Identity = 45/117 (38.46%), Postives = 74/117 (63.25%), Query Frame = 1
Query:   49 VIRTSFVFWLLDSKALPFLYVAEVTTLVTIRFFVYYRQHWHHFLLDFCYVVNACLVLYIVFFPKSQRLFVVTFGMANGTAAWGGILFRNALQFHDLQKMTSCYIHLLPATVCYALRW 399
            ++ T+F+F     + LP+ Y   +  L+  RF  ++ QH H+F++DFCY+ N  L++Y+ F+P S +LF +TF   NG   +  + +RN+L FHD  K+TSC+IH  P  + +A+RW
Sbjct:   71 LVSTTFIFGY-APRWLPYWYALWMAPLMIYRFVDFHAQHAHYFMIDFCYIGNLALMIYLFFYPSSPQLFALTFANNNGPILFAIVFWRNSLVFHDWDKLTSCFIHTFPPLISFAIRW 186          
BLAST of mRNA_P-wetherbeei_contig6218.1.1 vs. uniprot
Match: A0A1S3I5B5_LINUN (Glycerophosphocholine acyltransferase 1 n=2 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3I5B5_LINUN)

HSP 1 Score: 103 bits (258), Expect = 3.310e-23
Identity = 56/156 (35.90%), Postives = 81/156 (51.92%), Query Frame = 1
Query:   46 FVIRTSFVFWLLDSK-----ALPFLYVAEVTTLVTIRFFVYYRQHWHHFLLDFCYVVNACLVLYIVFFPKSQRLFVVTFGMANGTAAWGGILFRNALQFHDLQKMTSCYIHLLPATVCYALRWMSNDSRYALCRNSLGCPPFASAFWHMAAPVLVW 498
            +VI  + VF+L  +       LP+ Y      L+ IR  +Y++  W  F+LDFCY+ N    +Y+   P +   F++ F +ANG   +G ++FRNAL FH L KMTS YIHLLPA + + +RW           +     PF S F    AP  +W
Sbjct:   65 YVISVATVFFLAHAVITIQWVLPYYYAVSAPILILIRIILYWKLKWQLFMLDFCYLGNTLCYVYMWAAPANDSFFLLVFSIANGPLVFGALMFRNALVFHSLDKMTSVYIHLLPAYLTFGIRWFPGSC------SVYWYQPFISVF---QAPSFIW 211          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6218.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S1G2R6_9STRA1.530e-3438.97Glycerophosphocholine acyltransferase 1 n=1 Tax=Bi... [more]
UPI0003F0C0ED4.520e-2833.69uncharacterized protein LOC102805840 n=1 Tax=Sacco... [more]
V4BQD1_LOTGI8.770e-2534.18Glycerophosphocholine acyltransferase 1 n=1 Tax=Lo... [more]
UPI001E1D32932.690e-2432.93glycerophosphocholine acyltransferase 1-like n=1 T... [more]
A0A3P3Y9P7_PLABS4.480e-2441.67Glycerophosphocholine acyltransferase 1 n=1 Tax=Pl... [more]
A0A0G4IHJ4_PLABS5.960e-2441.67Glycerophosphocholine acyltransferase 1 (Fragment)... [more]
UPI001CFDC4A56.790e-2438.28uncharacterized protein n=1 Tax=Naegleria lovanien... [more]
A0A210QSJ2_MIZYE1.990e-2335.77Glycerophosphocholine acyltransferase 1 n=2 Tax=Mi... [more]
A0A6A5BIY4_NAEFO2.530e-2338.46Glycerophosphocholine acyltransferase 1 n=1 Tax=Na... [more]
A0A1S3I5B5_LINUN3.310e-2335.90Glycerophosphocholine acyltransferase 1 n=2 Tax=Li... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6218contigP-wetherbeei_contig6218:92..880 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog10224.XP_006815571.1
PFAMsDUF2838
Model size594
Max annot lvl33208|Metazoa
Hectar predicted targeting categorysignal peptide
Exons2
Evalue7.41e-29
EggNOG OGsKOG2895@1|root,KOG2895@2759|Eukaryota,38GNR@33154|Opisthokonta,3BQ9E@33208|Metazoa,3D7WH@33213|Bilateria
DescriptionProtein of unknown function (DUF2838)
Cds size594
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186897.9160728-CDS-P-wetherbeei_contig6218:91..2841683186897.9160728-CDS-P-wetherbeei_contig6218:91..284Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6218 92..284 +
1683186897.9258761-CDS-P-wetherbeei_contig6218:479..8801683186897.9258761-CDS-P-wetherbeei_contig6218:479..880Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6218 480..880 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6218.1.1prot_P-wetherbeei_contig6218.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6218 92..880 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6218.1.1

>prot_P-wetherbeei_contig6218.1.1 ID=prot_P-wetherbeei_contig6218.1.1|Name=mRNA_P-wetherbeei_contig6218.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=198bp
MLPSKKHLGGLTYAFFVIRTSFVFWLLDSKALPFLYVAEVTTLVTIRFFV
YYRQHWHHFLLDFCYVVNACLVLYIVFFPKSQRLFVVTFGMANGTAAWGG
ILFRNALQFHDLQKMTSCYIHLLPATVCYALRWMSNDSRYALCRNSLGCP
PFASAFWHMAAPVLVWCVHALLHGLWVFVMPHHHLRSAPGYTNTFLYL
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mRNA from alignment at P-wetherbeei_contig6218:92..880+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6218.1.1 ID=mRNA_P-wetherbeei_contig6218.1.1|Name=mRNA_P-wetherbeei_contig6218.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=789bp|location=Sequence derived from alignment at P-wetherbeei_contig6218:92..880+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCTCCCGTCGAAAAAGCATCTAGGCGGTTTGACCTATGCGTTCTTCGT GATCCGGACCAGCTTCGTGTTCTGGCTGCTGGATTCCAAGGCGCTGCCAT TTCTCTATGTCGCTGAAGTCACCACTCTGGTGACGATACGTTTCTTCGTC TACTATCGTCAGCACTGGCACCATTTCTTATTAGACTTTTGCTGTGAGTT GAGGAGCCGTCCCGAAAAATGTACTCGCCGTTTACTACTCTGGGAGCTGT CTTAACCATTGCTTAGCCTCACGCTTTCCTCATTTGGTTTTGAAAGGACT CCGTTGCCCTCCTCCAACTCCTCACATCCATCCCGATGCCTCAACCTTTT CCATTTACTTCTTTTACGTGTCTTAACGTCCAATGCAGATGTCGTAAATG CGTGTCTAGTCCTGTACATTGTCTTCTTCCCCAAGAGCCAGCGCCTCTTC GTGGTCACATTCGGCATGGCGAACGGGACCGCAGCGTGGGGCGGCATCCT CTTCCGAAACGCTCTCCAGTTCCACGACCTGCAGAAAATGACGTCATGCT ACATCCACTTGCTTCCCGCGACCGTCTGCTACGCACTTCGATGGATGTCC AACGACAGCCGTTACGCCCTGTGCCGGAATTCGCTCGGCTGCCCGCCCTT TGCGTCGGCGTTCTGGCATATGGCAGCGCCCGTGCTGGTTTGGTGCGTCC ATGCACTGCTGCATGGGCTGTGGGTCTTTGTGATGCCGCACCACCACCTG AGGAGCGCCCCGGGCTACACCAACACGTTTTTATACCTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6218:92..880+

>mRNA_P-wetherbeei_contig6218.1.1 ID=mRNA_P-wetherbeei_contig6218.1.1|Name=mRNA_P-wetherbeei_contig6218.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=594bp|location=Sequence derived from alignment at P-wetherbeei_contig6218:92..880+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCTCCCGTCGAAAAAGCATCTAGGCGGTTTGACCTATGCGTTCTTCGT
GATCCGGACCAGCTTCGTGTTCTGGCTGCTGGATTCCAAGGCGCTGCCAT
TTCTCTATGTCGCTGAAGTCACCACTCTGGTGACGATACGTTTCTTCGTC
TACTATCGTCAGCACTGGCACCATTTCTTATTAGACTTTTGCTATGTCGT
AAATGCGTGTCTAGTCCTGTACATTGTCTTCTTCCCCAAGAGCCAGCGCC
TCTTCGTGGTCACATTCGGCATGGCGAACGGGACCGCAGCGTGGGGCGGC
ATCCTCTTCCGAAACGCTCTCCAGTTCCACGACCTGCAGAAAATGACGTC
ATGCTACATCCACTTGCTTCCCGCGACCGTCTGCTACGCACTTCGATGGA
TGTCCAACGACAGCCGTTACGCCCTGTGCCGGAATTCGCTCGGCTGCCCG
CCCTTTGCGTCGGCGTTCTGGCATATGGCAGCGCCCGTGCTGGTTTGGTG
CGTCCATGCACTGCTGCATGGGCTGTGGGTCTTTGTGATGCCGCACCACC
ACCTGAGGAGCGCCCCGGGCTACACCAACACGTTTTTATACCTG
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