mRNA_P-wetherbeei_contig6209.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6209.3.1
Unique NamemRNA_P-wetherbeei_contig6209.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6209.3.1 vs. uniprot
Match: UPI0016844962 (serine/threonine protein kinase n=1 Tax=Coleofasciculus sp. FACHB-1120 TaxID=2692783 RepID=UPI0016844962)

HSP 1 Score: 68.9 bits (167), Expect = 3.120e-10
Identity = 39/82 (47.56%), Postives = 51/82 (62.20%), Query Frame = 1
Query:  334 GFVFAVALSPDGSRLFSGSGLRAQTDLELHAELKVWDFVTGKLRRIRTLSDHGLMVTCLAFSPDERRLASGSLDRTVKVWDV 579
            G V+AVALSPDG  L SGSG+   +       LK+W+  TG+L  IRTL+ H   +  +  SPDE+ + S SLD T+KVW V
Sbjct:  616 GGVYAVALSPDGQMLLSGSGIGENS-------LKLWNLRTGEL--IRTLTGHSNTIFSIVISPDEQTIYSSSLDGTIKVWRV 688          
BLAST of mRNA_P-wetherbeei_contig6209.3.1 vs. uniprot
Match: UPI00041DE80D (caspase family protein n=1 Tax=Desulfogranum mediterraneum TaxID=160661 RepID=UPI00041DE80D)

HSP 1 Score: 67.4 bits (163), Expect = 1.120e-9
Identity = 41/88 (46.59%), Postives = 55/88 (62.50%), Query Frame = 1
Query:  334 GFVFAVALSPDGSRLFSG------SGLRAQTDLELHAELKVWDFVTGKLRRIRTLSDHGLMVTCLAFSPDERRLASGSLDRTVKVWDV 579
            G +FA+ALSPD   L  G      +G +A  D E H +++++DF +G+L R+  L  H  +V  LAFS D   LASGS D+TVKVWDV
Sbjct:   95 GKIFAIALSPDDRWLAVGGYLGRFTGKKAGADEEAH-KIRIYDFASGRLHRV--LKSHTNVVIDLAFSADGSLLASGSADKTVKVWDV 179          
BLAST of mRNA_P-wetherbeei_contig6209.3.1 vs. uniprot
Match: A0A450S405_9GAMM (WD40 repeat n=1 Tax=Candidatus Kentron sp. FW TaxID=2126338 RepID=A0A450S405_9GAMM)

HSP 1 Score: 66.6 bits (161), Expect = 2.070e-9
Identity = 61/212 (28.77%), Postives = 87/212 (41.04%), Query Frame = 1
Query:    7 GHTEEITVLLSSADGR-VISASFDSTLREWDPASGRCLGVYEGHSGC-----VNGFALHRDGRCIVXXXXXXXXXXXXXXXXXXXKTLIAHPRQVRDNAETAAAAAVAAADDNAPGFVFAVALSPDGSRLFSGSGLRAQTDLELHAELKVWDFVTGKLRRIRTLSDHGLM--------------VTCLAFSPDERRLASGSLDRTVKVWDVA 582
            GH   I  +L + DGR +IS S D T+R WD  SG  L    G +G      +   AL  DGR +                         H      + +  A A +   + ++   + ++A SPDG RL SGSG             ++WD  T     + T  D GL               +  +AFSPD  RL +GSLD T+++WDV+
Sbjct:   20 GHKAVINDVLFTPDGRQLISVSDDKTIRIWDTGSGELLRTLRGQTGAGDEGKLYAGALSPDGRWLAVGGYTK------------------HDEICLIDLQAPADAPLRLLEGHSD-VILSLAFSPDGQRLLSGSG---------DGTARLWDLSTALEAGVSTPLDTGLQTGKTLKILRGHEAPIYAVAFSPDGARLVTGSLDHTLRLWDVS 203          
BLAST of mRNA_P-wetherbeei_contig6209.3.1 vs. uniprot
Match: A0A1Q3SH97_9CHLR (ANAPC4_WD40 domain-containing protein n=1 Tax=Chloroflexi bacterium 54-19 TaxID=1895928 RepID=A0A1Q3SH97_9CHLR)

HSP 1 Score: 65.1 bits (157), Expect = 6.890e-9
Identity = 34/81 (41.98%), Postives = 49/81 (60.49%), Query Frame = 1
Query:  340 VFAVALSPDGSRLFSGSGLRAQTDLELHAELKVWDFVTGKLRRIRTLSDHGLMVTCLAFSPDERRLASGSLDRTVKVWDVA 582
            +FAVA SPDG  +    G+    D +    +++WD  T     I TL+ H   V  LAFSPD ++LASGS DRT+++WD++
Sbjct:  641 IFAVAYSPDGRLVAGTGGVSYYPDTD--NAIRLWDTTTKNAAPILTLTGHFEPVQALAFSPDGKQLASGSYDRTIRLWDLS 719          
BLAST of mRNA_P-wetherbeei_contig6209.3.1 vs. uniprot
Match: UPI0004916309 (WD40 repeat domain-containing protein n=1 Tax=Desulfogranum mediterraneum TaxID=160661 RepID=UPI0004916309)

HSP 1 Score: 63.5 bits (153), Expect = 2.210e-8
Identity = 42/89 (47.19%), Postives = 55/89 (61.80%), Query Frame = 1
Query:  334 GFVFAVALSPDGSRLFSG------SGLRAQTDLELHAELKVWDFVTGKLRRIRTLSDHGLMVTCLAFSPDERRLASGSLDRTVKVWDVA 582
            G V+AVALSPD   L  G      SG +A+ D E H +++++DF +GKL R+  L  H  +V  L FS D   LASGS D+TVK+W VA
Sbjct:   94 GKVYAVALSPDDRWLAVGGYLGRFSGKKARADEEAH-KVRIYDFSSGKLHRL--LKGHTNVVNDLVFSADGSLLASGSGDKTVKLWRVA 179          
BLAST of mRNA_P-wetherbeei_contig6209.3.1 vs. uniprot
Match: A0A7S6RDB9_9CYAN (Uncharacterized protein n=1 Tax=Anabaenopsis elenkinii CCIBt3563 TaxID=2779889 RepID=A0A7S6RDB9_9CYAN)

HSP 1 Score: 56.6 bits (135), Expect = 1.110e-7
Identity = 27/51 (52.94%), Postives = 37/51 (72.55%), Query Frame = 1
Query:  430 LKVWDFVTGKLRRIRTLSDHGLMVTCLAFSPDERRLASGSLDRTVKVWDVA 582
            +K+WD  TGK+R   TL+ H   V  +AFSPD + LASGS D+T+K+WDV+
Sbjct:    2 IKLWDVQTGKVRH--TLTGHSGWVRSVAFSPDGQTLASGSGDKTIKLWDVS 50          
BLAST of mRNA_P-wetherbeei_contig6209.3.1 vs. uniprot
Match: A0A8H6QFD4_9EURO (Uncharacterized protein n=2 Tax=Aspergillus hiratsukae TaxID=1194566 RepID=A0A8H6QFD4_9EURO)

HSP 1 Score: 61.2 bits (147), Expect = 1.430e-7
Identity = 42/88 (47.73%), Postives = 48/88 (54.55%), Query Frame = 1
Query:  340 VFAVALSPDGSRLFSGSGLRAQTDLELHAELKVWDFVTGKLRRIRT-------LSDHGLMVTCLAFSPDERRLASGSLDRTVKVWDVA 582
            V +VA SPDG  L SGS  R QT       +K+WD  TG L            L  H   VT +AFSPD R LASGS D+TVK+WD A
Sbjct:  652 VTSVAFSPDGRLLASGS--RDQT-------VKLWDAATGTLMHTLEGHSASVCLEGHSDSVTSVAFSPDGRLLASGSDDKTVKLWDTA 730          
BLAST of mRNA_P-wetherbeei_contig6209.3.1 vs. uniprot
Match: UPI00041D4B73 (caspase family protein n=1 Tax=Desulfogranum mediterraneum TaxID=160661 RepID=UPI00041D4B73)

HSP 1 Score: 61.2 bits (147), Expect = 1.450e-7
Identity = 39/82 (47.56%), Postives = 51/82 (62.20%), Query Frame = 1
Query:  334 GFVFAVALSPDGSRLFSGSGLRAQTDLELHAELKVWDFVTGKLRRIRTLSDHGLMVTCLAFSPDERRLASGSLDRTVKVWDV 579
            G VFA+ALSPD   L  G G     D+     ++++DF +GKL R+  L  H  +V  +AFSPD R LASGS D+TVK+W V
Sbjct:   94 GKVFAIALSPDDRWLAVG-GYFLPDDV-----IRIYDFSSGKLHRV--LKSHSNVVHDVAFSPDGRVLASGSADKTVKLWAV 167          
BLAST of mRNA_P-wetherbeei_contig6209.3.1 vs. uniprot
Match: M2PIE8_9PSEU (Uncharacterized protein n=1 Tax=Amycolatopsis azurea DSM 43854 TaxID=1238180 RepID=M2PIE8_9PSEU)

HSP 1 Score: 60.8 bits (146), Expect = 2.020e-7
Identity = 40/90 (44.44%), Postives = 52/90 (57.78%), Query Frame = 1
Query:  328 APGFVFAVALSPDGSRLF--SGSGLRAQTDLELHAELKVWDFVTGKLRRIR---TLSDHGLMVTCLAFSPDERRLASGSLDRTVKVWDVA 582
            A G V A+ALS DG+R+   SG G+ A   +           V GK  R R   T++ H L VT LAFSPD R LASGS DR++++W +A
Sbjct:  987 AKGSVSAIALSADGNRVAVASGDGISAPPQIS----------VAGKRERFRDILTVTGHALPVTSLAFSPDGRTLASGSDDRSIRLWGLA 1066          
BLAST of mRNA_P-wetherbeei_contig6209.3.1 vs. uniprot
Match: UPI001FD4AD37 (hypothetical protein n=1 Tax=Streptomyces rhizosphaericus TaxID=114699 RepID=UPI001FD4AD37)

HSP 1 Score: 55.1 bits (131), Expect = 7.380e-7
Identity = 28/49 (57.14%), Postives = 34/49 (69.39%), Query Frame = 1
Query:  436 VWDFVTGKLRRIRTLSDHGLMVTCLAFSPDERRLASGSLDRTVKVWDVA 582
            +WD  TGK R   TL+ H   VT LAFSPD R LASGS D+TV++WD +
Sbjct:    1 MWDLATGKPRA--TLAGHTGTVTSLAFSPDGRTLASGSDDKTVRLWDAS 47          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6209.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00168449623.120e-1047.56serine/threonine protein kinase n=1 Tax=Coleofasci... [more]
UPI00041DE80D1.120e-946.59caspase family protein n=1 Tax=Desulfogranum medit... [more]
A0A450S405_9GAMM2.070e-928.77WD40 repeat n=1 Tax=Candidatus Kentron sp. FW TaxI... [more]
A0A1Q3SH97_9CHLR6.890e-941.98ANAPC4_WD40 domain-containing protein n=1 Tax=Chlo... [more]
UPI00049163092.210e-847.19WD40 repeat domain-containing protein n=1 Tax=Desu... [more]
A0A7S6RDB9_9CYAN1.110e-752.94Uncharacterized protein n=1 Tax=Anabaenopsis elenk... [more]
A0A8H6QFD4_9EURO1.430e-747.73Uncharacterized protein n=2 Tax=Aspergillus hirats... [more]
UPI00041D4B731.450e-747.56caspase family protein n=1 Tax=Desulfogranum medit... [more]
M2PIE8_9PSEU2.020e-744.44Uncharacterized protein n=1 Tax=Amycolatopsis azur... [more]
UPI001FD4AD377.380e-757.14hypothetical protein n=1 Tax=Streptomyces rhizosph... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6209contigP-wetherbeei_contig6209:2237..3514 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog6087.XP_002157810.2
Preferred namePWP2
PFAMsUtp12,WD40
Model size582
Max annot lvl33208|Metazoa
KEGG koko:K14558
KEGG Pathwayko03008,map03008
Hectar predicted targeting categoryother localisation
GOsGO:0000028,GO:0000462,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016072,GO:0022607,GO:0022613,GO:0022618,GO:0030490,GO:0030515,GO:0030684,GO:0030686,GO:0031974,GO:0031981,GO:0032040,GO:0032991,GO:0034388,GO:0034470,GO:0034622,GO:0034641,GO:0034660,GO:0042254,GO:0042255,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0046483,GO:0065003,GO:0070013,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990904
Exons2
Evalue1.73e-08
EggNOG OGsKOG0291@1|root,KOG0291@2759|Eukaryota,38DVV@33154|Opisthokonta,3BDVP@33208|Metazoa
Descriptionribosomal small subunit assembly
Cds size582
COG categoryA
BRITEko00000,ko00001,ko03009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186897.3549278-CDS-P-wetherbeei_contig6209:2236..23601683186897.3549278-CDS-P-wetherbeei_contig6209:2236..2360Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6209 2237..2360 -
1683186897.3696167-CDS-P-wetherbeei_contig6209:3056..35141683186897.3696167-CDS-P-wetherbeei_contig6209:3056..3514Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6209 3057..3514 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6209.3.1prot_P-wetherbeei_contig6209.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6209 2237..3514 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6209.3.1

>prot_P-wetherbeei_contig6209.3.1 ID=prot_P-wetherbeei_contig6209.3.1|Name=mRNA_P-wetherbeei_contig6209.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=194bp
VQGHTEEITVLLSSADGRVISASFDSTLREWDPASGRCLGVYEGHSGCVN
GFALHRDGRCIVSGSSDGSIKVWDRATRRCIKTLIAHPRQVRDNAETAAA
AAVAAADDNAPGFVFAVALSPDGSRLFSGSGLRAQTDLELHAELKVWDFV
TGKLRRIRTLSDHGLMVTCLAFSPDERRLASGSLDRTVKVWDVA
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mRNA from alignment at P-wetherbeei_contig6209:2237..3514-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6209.3.1 ID=mRNA_P-wetherbeei_contig6209.3.1|Name=mRNA_P-wetherbeei_contig6209.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1278bp|location=Sequence derived from alignment at P-wetherbeei_contig6209:2237..3514- (Phaeothamnion wetherbeei SAG_119_79)
GTGCAAGGGCATACTGAAGAGATTACAGTTTTGCTGTCAAGCGCCGACGG GCGTGTCATCAGCGCGTCGTTCGATTCGACGCTCCGCGAGTGGGATCCAG CCTCGGGCCGCTGCCTCGGTGTCTACGAAGGCCACAGCGGGTGCGTCAAC GGCTTTGCCCTTCACCGCGACGGCCGCTGCATCGTCAGCGGTAGCAGTGA TGGCAGCATAAAAGTCTGGGATCGCGCCACGCGTCGCTGCATTAAGACCC TCATCGCCCACCCTCGGCAGGTGCGGGACAATGCCGAAACCGCGGCTGCA GCAGCCGTCGCCGCCGCAGATGACAACGCGCCGGGCTTTGTCTTTGCAGT GGCGCTATCGCCCGACGGCTCCCGCCTCTTCTCCGGCAGCGGGCTGCGTG CGCAGACCGATCTGGAGCTTCACGCGGAACTGAAAGTCTGGGACTTTGTG ACGGGAAAGTGCTCCCTGACGGTGCTTGTGGAGGGCCGCGGCAGCATCAC TGGGTTCGCTATGACGCCAGACGGACTCTGGCTGGCCGTCTGCTTCCGTG GGCAGCCGGAGTTTGAACTGCGGATGTGAGTGGGAAGGAGTAGAGGGCTG GATGCGCTCATGACAATCCAAGTGTTCTCACGTCCGATCACATTCTCTAG CATCGTTGGCGCAATTCTTTCTGCGCGCAGTCAGTGTCCACCTTCGGCTC CGCTGCATCGTCAGGTTGAAACTTTTCCTGGGCTTTCCTTTCTCTTTTTC CGATAACTCCTTTGTTTTCGCCGTGTCTACCTCGATCTTTTTGCAACTCT GCCGGCAACGGCAGGTGGGACGTGGAATCCTCTCAATGGCTGGAGGCGGC GGGCGGCGGGCTCTCGCACAGCGACGAGGCTCGCAGCGCGGCGTTCGGGC GCGGCGGCCGGCTGCTGGCGGTGGGCACGCGCTCCGGCGCCGTCGAGGTG TGTGGAAAGGCGAGGAGCCGAAATCCTGCTGTCTTTTGTGTTCTGTGCCG CCTATGGGTTCATCGCTTTCTCATAAAGCGTATCAAAAGGCTTGGGCCGC GTCATGCCTTTTGCGCTCTCTTTGCTTTCTCCCCTGCCCACCGCGCACGG CCCCCCATTCACCGGCTTGCGGCAGGTGCTGGAATGGCGTCAGCGCCACC GAAGGCTGCGGCGGATCCGGACGCTGTCCGATCACGGCCTGATGGTGACC TGCCTGGCCTTCTCGCCGGACGAGCGGCGGCTGGCGTCTGGTAGCCTCGA CCGCACCGTTAAGGTGTGGGACGTGGCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6209:2237..3514-

>mRNA_P-wetherbeei_contig6209.3.1 ID=mRNA_P-wetherbeei_contig6209.3.1|Name=mRNA_P-wetherbeei_contig6209.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=582bp|location=Sequence derived from alignment at P-wetherbeei_contig6209:2237..3514- (Phaeothamnion wetherbeei SAG_119_79)
GTGCAAGGGCATACTGAAGAGATTACAGTTTTGCTGTCAAGCGCCGACGG
GCGTGTCATCAGCGCGTCGTTCGATTCGACGCTCCGCGAGTGGGATCCAG
CCTCGGGCCGCTGCCTCGGTGTCTACGAAGGCCACAGCGGGTGCGTCAAC
GGCTTTGCCCTTCACCGCGACGGCCGCTGCATCGTCAGCGGTAGCAGTGA
TGGCAGCATAAAAGTCTGGGATCGCGCCACGCGTCGCTGCATTAAGACCC
TCATCGCCCACCCTCGGCAGGTGCGGGACAATGCCGAAACCGCGGCTGCA
GCAGCCGTCGCCGCCGCAGATGACAACGCGCCGGGCTTTGTCTTTGCAGT
GGCGCTATCGCCCGACGGCTCCCGCCTCTTCTCCGGCAGCGGGCTGCGTG
CGCAGACCGATCTGGAGCTTCACGCGGAACTGAAAGTCTGGGACTTTGTG
ACGGGAAAGCTGCGGCGGATCCGGACGCTGTCCGATCACGGCCTGATGGT
GACCTGCCTGGCCTTCTCGCCGGACGAGCGGCGGCTGGCGTCTGGTAGCC
TCGACCGCACCGTTAAGGTGTGGGACGTGGCG
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