mRNA_P-wetherbeei_contig6205.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6205.1.1
Unique NamemRNA_P-wetherbeei_contig6205.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6205.1.1 vs. uniprot
Match: A0A3C0TYS5_9PROT (Protein-tyrosine-phosphatase n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3C0TYS5_9PROT)

HSP 1 Score: 174 bits (441), Expect = 4.620e-53
Identity = 80/131 (61.07%), Postives = 95/131 (72.52%), Query Frame = 1
Query:    4 FPISAITTRHSGKIGICSCPGRKYPPVLGTIQKHSLTQDLQAIRNFPAAVLITLMEMGELDWAGPALPELGAACATLGMQHIYLPIVDCDIPDMQWERRWESHGPELHTLIKSGHNIVFHCRGGRGRAGLA 396
            F +  + T  +GKIG+C+CPGRK+  + G      L  DL+AIR FPAAVLITLME GELDWA  +LP+L +A    G+ HI+LPIVD DIPD+QWER WE HGP LH  +  G NIVFHCRGGRGRAGLA
Sbjct:   15 FQVDVLLTGTAGKIGLCACPGRKFQQLSGLSPDSDLKADLEAIRAFPAAVLITLMEGGELDWAAASLPQLRSAAEEAGLHHIHLPIVDGDIPDIQWERNWEFHGPRLHDELHGGGNIVFHCRGGRGRAGLA 145          
BLAST of mRNA_P-wetherbeei_contig6205.1.1 vs. uniprot
Match: A0A353LSG0_9PROT (Protein-tyrosine-phosphatase n=3 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A353LSG0_9PROT)

HSP 1 Score: 140 bits (353), Expect = 9.390e-40
Identity = 65/132 (49.24%), Postives = 85/132 (64.39%), Query Frame = 1
Query:    7 PISAITTRHS---GKIGICSCPGRKYPPVLGTIQKHSLTQDLQAIRNFPAAVLITLMEMGELDWAGPALPELGAACATLGMQHIYLPIVDCDIPDMQWERRWESHGPELHTLIKSGHNIVFHCRGGRGRAGL 393
            P++  T  HS   G+IGIC+CPGR+ PP +       L  D++ I +F A  ++TLME+GELDWA   L  L AA     MQ IYLPI+D + PD  WERRW     +LH L+++G N+V HCRGGRGRAG+
Sbjct:    3 PLTIATITHSAIVGQIGICACPGRRLPPGIAGQHCRDLDADMETISDFGARAVLTLMEVGELDWAAVPLARLRAAVQARRMQSIYLPIIDQEAPDHHWERRWREQRDQLHLLLRTGGNLVIHCRGGRGRAGM 134          
BLAST of mRNA_P-wetherbeei_contig6205.1.1 vs. uniprot
Match: UPI000477F55D (cyclin-dependent kinase inhibitor 3 family protein n=2 Tax=Thioalkalivibrio TaxID=106633 RepID=UPI000477F55D)

HSP 1 Score: 100 bits (249), Expect = 6.300e-24
Identity = 51/130 (39.23%), Postives = 73/130 (56.15%), Query Frame = 1
Query:    1 PFPISAITTRHSGKIGICSCPGRKYPPVLGTIQKHSLTQDLQAIRNFPAAVLITLMEMGELDWAGPALPELGAACATLGMQHIYLPIVDCDIPDMQWERRWESHGPELHTLIKSGHNIVFHCRGGRGRAG 390
            P  I+A+T    G IGI  CPG++    +       L  DL+ IR + AA ++TL  + EL   G  +P LG A +  GM   +LPI D   PD +W+ RW++  PE+H  + +G  +V HC+GG GRAG
Sbjct:   11 PLEIAALTLPEGGTIGITFCPGKQQVHAMTGAWARDLQADLERIRAWGAAGVVTLTTLDELHELG--VPGLGEAVSETGMTWYHLPIPDMAAPDPRWDDRWQAVAPEMHRALYAGGRLVVHCKGGLGRAG 138          
BLAST of mRNA_P-wetherbeei_contig6205.1.1 vs. uniprot
Match: UPI001AF018FA (cyclin-dependent kinase inhibitor 3 family protein n=1 Tax=Motiliproteus sediminis TaxID=1468178 RepID=UPI001AF018FA)

HSP 1 Score: 99.4 bits (246), Expect = 1.360e-23
Identity = 53/132 (40.15%), Postives = 75/132 (56.82%), Query Frame = 1
Query:    1 PFPISAI-TTRHSGKIGICSCPGRKYPPVLGTIQKHSLTQDLQAIRNFPAAVLITLMEMGELDWAGPALPELGAACATLGMQHIYLPIVDCDIPDMQWERRWESHGPELHTLIKSGHNIVFHCRGGRGRAGL 393
            P  I+A+  +   G+IGI  CPG++ P  L       L  DLQAI  + A +++TL+E  EL      +P+LG A    GM   +LPI D  +PD Q+E+RW   G  L   ++ G +IV HC+GG GRAG+
Sbjct:   11 PLEIAAVRASDDQGRIGITFCPGKQDPHALTGAWARDLDADLQAISAWGATLVVTLVESFELGLL--KVPQLGEAVERHGMDWCHLPIADYSVPDAQFEQRWLCEGKALRQRLRQGQDIVVHCKGGLGRAGM 140          
BLAST of mRNA_P-wetherbeei_contig6205.1.1 vs. uniprot
Match: UPI000365B9CF (cyclin-dependent kinase inhibitor 3 family protein n=5 Tax=Thioalkalivibrio TaxID=106633 RepID=UPI000365B9CF)

HSP 1 Score: 98.6 bits (244), Expect = 3.530e-23
Identity = 50/130 (38.46%), Postives = 71/130 (54.62%), Query Frame = 1
Query:    1 PFPISAITTRHSGKIGICSCPGRKYPPVLGTIQKHSLTQDLQAIRNFPAAVLITLMEMGELDWAGPALPELGAACATLGMQHIYLPIVDCDIPDMQWERRWESHGPELHTLIKSGHNIVFHCRGGRGRAG 390
            P  I+ IT    G IGI  CPG++    +       L  DL  IR + AA ++TL  + EL   G  +P LG A +  G+   +LPI D   PD QW+ RW++  PE+H  + +G  ++ HC+GG GRAG
Sbjct:   11 PLEIAEITLPEGGTIGITFCPGKQQAHAMTGAWARDLEADLDRIRAWGAAGVVTLTTLEELHELG--VPRLGEAVSETGVTWYHLPIPDMAAPDRQWDDRWQAVAPEMHRALYAGGRLLVHCKGGLGRAG 138          
BLAST of mRNA_P-wetherbeei_contig6205.1.1 vs. uniprot
Match: UPI001F2510D5 (ADP-ribosylglycohydrolase family protein n=1 Tax=Rhizorhapis sp. SPR117 TaxID=2912611 RepID=UPI001F2510D5)

HSP 1 Score: 99.8 bits (247), Expect = 1.870e-22
Identity = 51/130 (39.23%), Postives = 77/130 (59.23%), Query Frame = 1
Query:    1 PFPISAITTRHSGKIGICSCPGRKYPPVLGTIQKHSLTQDLQAIRNFPAAVLITLMEMGELDWAGPALPELGAACATLGMQHIYLPIVDCDIPDMQWERRWESHGPELHTLIKSGHNIVFHCRGGRGRAG 390
            P  I  ++   SG+IGI  CPG++ P + G   K  L  DL A+R + AA +++L+E  E++  G A  ++  A A  GM+  +LPI D   P  ++E+RW + G  L +L+ +G +I  HCRGG GRAG
Sbjct:   12 PIQIPTLSAA-SGRIGISFCPGKQGPALAGFEWKRDLAADLDAVREWGAAAVVSLIEKHEIELLGVA--DMETAVAARGMEWFHLPIPDVTAPGEEFEQRWHTAGARLRSLLTNGKSIFIHCRGGLGRAG 138          
BLAST of mRNA_P-wetherbeei_contig6205.1.1 vs. uniprot
Match: UPI001AA0C1C1 (cyclin-dependent kinase inhibitor 3 family protein n=1 Tax=Bradyrhizobium sp. 38S5 TaxID=2819348 RepID=UPI001AA0C1C1)

HSP 1 Score: 95.9 bits (237), Expect = 2.820e-22
Identity = 50/132 (37.88%), Postives = 72/132 (54.55%), Query Frame = 1
Query:    7 PISAITTRHS---GKIGICSCPGRKYPPVLGTIQKHSLTQDLQAIRNFPAAVLITLMEMGELDWAGPALPELGAACATLGMQHIYLPIVDCDIPDMQWERRWESHGPELHTLIKSGHNIVFHCRGGRGRAGL 393
            P+   T R     G+IGI  CPG++    +       L+ DL  I  + A +++TL+E  ELD  G  +P LG      G+   +LPIVD  +P   +E  WE  G E+  L++SG ++V HCRGG GRAG+
Sbjct:   11 PLEIATVRAGPTHGRIGITFCPGKQDESAMTGAWARDLSADLDEIEKWGARLVLTLVEPAELDALG--VPHLGREVQNRGIHWRHLPIVDYSVPTKAFEMEWEVQGKEIRALLRSGGDVVLHCRGGLGRAGM 140          
BLAST of mRNA_P-wetherbeei_contig6205.1.1 vs. uniprot
Match: A0A101VI46_9SPHN (Uncharacterized protein n=4 Tax=Sphingomonadales TaxID=204457 RepID=A0A101VI46_9SPHN)

HSP 1 Score: 99.8 bits (247), Expect = 6.350e-22
Identity = 49/130 (37.69%), Postives = 79/130 (60.77%), Query Frame = 1
Query:    1 PFPISAITTRHSGKIGICSCPGRKYPPVLGTIQKHSLTQDLQAIRNFPAAVLITLMEMGELDWAGPALPELGAACATLGMQHIYLPIVDCDIPDMQWERRWESHGPELHTLIKSGHNIVFHCRGGRGRAG 390
            P  I  ++   +G+IG+  CPG++ P + G      LT DL A+R++ AA +I+L+E  E+++ G  + +L A     GM+ ++LPIVD   P  ++E+RW S GP +  ++  G ++  HCRGG GRAG
Sbjct:   12 PIQIPTLSVA-TGRIGVSFCPGKRGPALAGFDWMRDLTVDLDAVRDWGAAAVISLIEDHEIEFLG--VSKLEAEVTARGMEWLHLPIVDVAAPGDEFEQRWRSAGPRVRGILAEGRSVFIHCRGGLGRAG 138          
BLAST of mRNA_P-wetherbeei_contig6205.1.1 vs. uniprot
Match: UPI001AE0772F (Cyclin-dependent kinase inhibitor 3 family protein n=2 Tax=Roseomonas sp. SSH11 TaxID=2820812 RepID=UPI001AE0772F)

HSP 1 Score: 94.4 bits (233), Expect = 1.450e-21
Identity = 50/131 (38.17%), Postives = 67/131 (51.15%), Query Frame = 1
Query:    1 PFPISAITTRHSGKIGICSCPGRKYPPVLGTIQKHSLTQDLQAIRNFPAAVLITLMEMGELDWAGPALPELGAACATLGMQHIYLPIVDCDIPDMQWERRWESHGPELHTLIKSGHNIVFHCRGGRGRAGL 393
            P  I  +     G IG+  CPG+  P  LG   +  L  DL A+R++ A  ++TLME  EL  A   +  +G      GM  ++LPI D D+PD  +E  W   GP L   +  G  I+ HCRGG GR GL
Sbjct:   13 PLRIEPVAAPGGGLIGMTFCPGKVQPGGLGGNWRRDLALDLDAVRDWGAVAVVTLMEEHEL--ARYRVAAMGEEVRARGMAWLHLPIADADVPDEAFEALWLEAGPRLLAWLGEGRRILLHCRGGLGRTGL 141          
BLAST of mRNA_P-wetherbeei_contig6205.1.1 vs. uniprot
Match: UPI001BAAB9ED (cyclin-dependent kinase inhibitor 3 family protein n=2 Tax=Bradyrhizobium sp. AUGA SZCCT0274 TaxID=2807670 RepID=UPI001BAAB9ED)

HSP 1 Score: 93.2 bits (230), Expect = 3.070e-21
Identity = 46/118 (38.98%), Postives = 68/118 (57.63%), Query Frame = 1
Query:   37 GKIGICSCPGRKYPPVLGTIQKHSLTQDLQAIRNFPAAVLITLMEMGELDWAGPALPELGAACATLGMQHIYLPIVDCDIPDMQWERRWESHGPELHTLIKSGHNIVFHCRGGRGRAG 390
            G++G+  CPG+  P  +       L  DL AI N+ AA ++TL+E  EL      +  LG       M   +LPIVD  IPD  +E +W++ G EL +++++G ++V HCRGG GRAG
Sbjct:   22 GRVGVTFCPGKHDPHAMSGHWDRDLAVDLDAINNWGAAAVVTLVEPKELTLL--RVERLGEEVVRRHMLWFHLPIVDVSIPDQSFEEKWDTAGVELRSILRNGSDVVVHCRGGLGRAG 137          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6205.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3C0TYS5_9PROT4.620e-5361.07Protein-tyrosine-phosphatase n=1 Tax=Alphaproteoba... [more]
A0A353LSG0_9PROT9.390e-4049.24Protein-tyrosine-phosphatase n=3 Tax=Alphaproteoba... [more]
UPI000477F55D6.300e-2439.23cyclin-dependent kinase inhibitor 3 family protein... [more]
UPI001AF018FA1.360e-2340.15cyclin-dependent kinase inhibitor 3 family protein... [more]
UPI000365B9CF3.530e-2338.46cyclin-dependent kinase inhibitor 3 family protein... [more]
UPI001F2510D51.870e-2239.23ADP-ribosylglycohydrolase family protein n=1 Tax=R... [more]
UPI001AA0C1C12.820e-2237.88cyclin-dependent kinase inhibitor 3 family protein... [more]
A0A101VI46_9SPHN6.350e-2237.69Uncharacterized protein n=4 Tax=Sphingomonadales T... [more]
UPI001AE0772F1.450e-2138.17Cyclin-dependent kinase inhibitor 3 family protein... [more]
UPI001BAAB9ED3.070e-2138.98cyclin-dependent kinase inhibitor 3 family protein... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6205contigP-wetherbeei_contig6205:1..396 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1158760.AQXP01000013_gene1687
PFAMsCDKN3
Model size396
Max annot lvl135613|Chromatiales
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.1e-26
EggNOG OGsCOG2453@1|root,COG2453@2|Bacteria,1N0H0@1224|Proteobacteria,1S9JV@1236|Gammaproteobacteria,1WY48@135613|Chromatiales
DescriptionCyclin-dependent kinase inhibitor 3 (CDKN3)
Cds size396
COG categoryT
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186896.916178-CDS-P-wetherbeei_contig6205:0..3961683186896.916178-CDS-P-wetherbeei_contig6205:0..396Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6205 1..396 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6205.1.1prot_P-wetherbeei_contig6205.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6205 1..396 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6205.1.1

>prot_P-wetherbeei_contig6205.1.1 ID=prot_P-wetherbeei_contig6205.1.1|Name=mRNA_P-wetherbeei_contig6205.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=132bp
PFPISAITTRHSGKIGICSCPGRKYPPVLGTIQKHSLTQDLQAIRNFPAA
VLITLMEMGELDWAGPALPELGAACATLGMQHIYLPIVDCDIPDMQWERR
WESHGPELHTLIKSGHNIVFHCRGGRGRAGLA
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mRNA from alignment at P-wetherbeei_contig6205:1..396-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6205.1.1 ID=mRNA_P-wetherbeei_contig6205.1.1|Name=mRNA_P-wetherbeei_contig6205.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=396bp|location=Sequence derived from alignment at P-wetherbeei_contig6205:1..396- (Phaeothamnion wetherbeei SAG_119_79)
CCCTTTCCGATCAGCGCCATCACCACACGGCACAGCGGAAAAATCGGGAT TTGTTCATGCCCCGGCCGGAAATATCCGCCAGTTCTGGGGACCATCCAAA AACATAGCCTGACGCAGGATTTGCAGGCTATTCGAAATTTTCCCGCCGCA GTGCTGATAACCCTGATGGAAATGGGTGAGCTTGACTGGGCTGGCCCCGC ATTGCCTGAATTGGGCGCGGCCTGCGCAACGCTTGGAATGCAGCATATTT ACCTGCCGATTGTCGATTGTGACATTCCAGACATGCAGTGGGAACGCCGT TGGGAAAGCCACGGTCCTGAACTGCACACCCTGATAAAGTCTGGGCATAA TATTGTCTTTCACTGTCGCGGCGGCCGGGGCCGCGCCGGGCTTGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6205:1..396-

>mRNA_P-wetherbeei_contig6205.1.1 ID=mRNA_P-wetherbeei_contig6205.1.1|Name=mRNA_P-wetherbeei_contig6205.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=396bp|location=Sequence derived from alignment at P-wetherbeei_contig6205:1..396- (Phaeothamnion wetherbeei SAG_119_79)
CCCTTTCCGATCAGCGCCATCACCACACGGCACAGCGGAAAAATCGGGAT
TTGTTCATGCCCCGGCCGGAAATATCCGCCAGTTCTGGGGACCATCCAAA
AACATAGCCTGACGCAGGATTTGCAGGCTATTCGAAATTTTCCCGCCGCA
GTGCTGATAACCCTGATGGAAATGGGTGAGCTTGACTGGGCTGGCCCCGC
ATTGCCTGAATTGGGCGCGGCCTGCGCAACGCTTGGAATGCAGCATATTT
ACCTGCCGATTGTCGATTGTGACATTCCAGACATGCAGTGGGAACGCCGT
TGGGAAAGCCACGGTCCTGAACTGCACACCCTGATAAAGTCTGGGCATAA
TATTGTCTTTCACTGTCGCGGCGGCCGGGGCCGCGCCGGGCTTGCC
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