mRNA_P-wetherbeei_contig6202.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6202.3.1
Unique NamemRNA_P-wetherbeei_contig6202.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6202.3.1 vs. uniprot
Match: A0A3C0TRX2_9PROT (Uncharacterized protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3C0TRX2_9PROT)

HSP 1 Score: 111 bits (277), Expect = 9.680e-28
Identity = 63/164 (38.41%), Postives = 84/164 (51.22%), Query Frame = 1
Query:    1 ADQRHPQLVPLFEKLMNKDMAPEEARAIEGQIWTLWQASGSDTTDVLLARVDAFLREDASEPAIDLLNEVVSLSPEYAEGWNKRATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPHLKDIAKEAERLELTVKGRGI 492
            ADQ  P+L  LF++L  K++   +A+A+E QIW +W ASGS +TD+LLARV+  L  DA E AI LL+E++++SP++AEGWNKRAT                                                        PHL DIAKEAERL L+ +GR I
Sbjct:   25 ADQHDPKLDGLFQRLKLKELPVSDAQALEDQIWRIWHASGSPSTDLLLARVETMLAADALESAIKLLDEIIAISPDFAEGWNKRATVYFLRNDFPAALRDAEHALRLEPRHFGAWAGLGAIFLELGQDAKALLAYQEALKINPHLTDIAKEAERLTLSARGRSI 188          
BLAST of mRNA_P-wetherbeei_contig6202.3.1 vs. uniprot
Match: A0A2P5VMZ5_9PROT (Uncharacterized protein (Fragment) n=1 Tax=Alphaproteobacteria bacterium MarineAlpha1_Bin1 TaxID=2013065 RepID=A0A2P5VMZ5_9PROT)

HSP 1 Score: 77.4 bits (189), Expect = 1.010e-14
Identity = 41/86 (47.67%), Postives = 57/86 (66.28%), Query Frame = 1
Query:    1 ADQRHPQLVPLFEKLMNKDMAPEEARAIEGQIWTLWQASGSDTTDVLLARVDAFLREDASEPAIDLLNEVVSLSPEYAEGWNKRAT 258
            ADQ+ P+L  LF +L   D  P++AR IE  IW++W AS S T ++L+ RV   +       A+ LL+ +V++SPEYAEGWNKRAT
Sbjct:   18 ADQKDPRLDKLFVELQETDN-PQKARLIERSIWSIWVASDSPTLELLMNRVIMRMGNQEYGEALRLLDAIVTISPEYAEGWNKRAT 102          
BLAST of mRNA_P-wetherbeei_contig6202.3.1 vs. uniprot
Match: A0A2E9Y631_9PROT (Uncharacterized protein n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E9Y631_9PROT)

HSP 1 Score: 72.8 bits (177), Expect = 7.090e-13
Identity = 38/86 (44.19%), Postives = 54/86 (62.79%), Query Frame = 1
Query:    1 ADQRHPQLVPLFEKLMNKDMAPEEARAIEGQIWTLWQASGSDTTDVLLARVDAFLREDASEPAIDLLNEVVSLSPEYAEGWNKRAT 258
            ADQ  P+L  LF +L + D  P +AR IE  IW +W  S S T ++L+ RV   +       A++LL+ +V+++P YAEGWNKRAT
Sbjct:   28 ADQNDPRLDQLFFQLQDVD-DPRQARLIEQMIWGVWLESKSPTLELLMGRVIKTMERKKYAEALELLHSIVAIAPNYAEGWNKRAT 112          
BLAST of mRNA_P-wetherbeei_contig6202.3.1 vs. uniprot
Match: A0A7X4C1N7_9PROT (Tetratricopeptide repeat protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A7X4C1N7_9PROT)

HSP 1 Score: 72.8 bits (177), Expect = 8.210e-13
Identity = 36/86 (41.86%), Postives = 55/86 (63.95%), Query Frame = 1
Query:    1 ADQRHPQLVPLFEKLMNKDMAPEEARAIEGQIWTLWQASGSDTTDVLLARVDAFLREDASEPAIDLLNEVVSLSPEYAEGWNKRAT 258
            ADQ  P+L  LF +L  +D+ PEEA  ++ +IW LW  S   T + L+A+    ++  A + A+D  N++V  +P++AEGWNKRAT
Sbjct:   36 ADQNDPELSALFARLQ-QDLTPEEAAEVDRRIWLLWLHSEDKTVNRLMAQGMIAMQRGALDRALDRFNDIVERAPDFAEGWNKRAT 120          
BLAST of mRNA_P-wetherbeei_contig6202.3.1 vs. uniprot
Match: A0A352GHB1_9PROT (Uncharacterized protein (Fragment) n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A352GHB1_9PROT)

HSP 1 Score: 70.9 bits (172), Expect = 1.020e-12
Identity = 38/86 (44.19%), Postives = 50/86 (58.14%), Query Frame = 1
Query:    1 ADQRHPQLVPLFEKLMNKDMAPEEARAIEGQIWTLWQASGSDTTDVLLARVDAFLREDASEPAIDLLNEVVSLSPEYAEGWNKRAT 258
            ADQ  P L  LFE L      PEEA  IE +IW  W  SG +  D  +AR    +   A + ++   N+V+SL+P++AEGWNKRAT
Sbjct:   16 ADQTDPVLDALFEAL-TATKNPEEAHQIETRIWQTWAVSGQELVDSAMARGVIAMNRGALDASLKYFNDVISLAPKHAEGWNKRAT 100          
BLAST of mRNA_P-wetherbeei_contig6202.3.1 vs. uniprot
Match: UPI000C199C99 (hypothetical protein n=1 Tax=Pararhizobium haloflavum TaxID=2037914 RepID=UPI000C199C99)

HSP 1 Score: 70.9 bits (172), Expect = 4.620e-12
Identity = 32/71 (45.07%), Postives = 46/71 (64.79%), Query Frame = 1
Query:   46 MNKDMAPEEARAIEGQIWTLWQASGSDTTDVLLARVDAFLREDASEPAIDLLNEVVSLSPEYAEGWNKRAT 258
            + ++  P EARAI   IW  W  SGS T D+L+   +  + +D +  A+DLL++V  L PE+AEGWN+RAT
Sbjct:   53 LKRESDPGEARAIVSNIWAEWNRSGSATVDLLMQWANEAMEDDRNGTALDLLDQVTVLRPEFAEGWNRRAT 123          
BLAST of mRNA_P-wetherbeei_contig6202.3.1 vs. uniprot
Match: UPI001AD8FDB7 (tetratricopeptide repeat protein n=1 Tax=Roseibium sediminis TaxID=1775174 RepID=UPI001AD8FDB7)

HSP 1 Score: 70.9 bits (172), Expect = 5.550e-12
Identity = 40/76 (52.63%), Postives = 47/76 (61.84%), Query Frame = 1
Query:   31 LFEKLMNKDMAPEEARAIEGQIWTLWQASGSDTTDVLLARVDAFLREDASEPAIDLLNEVVSLSPEYAEGWNKRAT 258
            LF KL +    PE A  I   I   W  SGSDT DVL+ R    LR D +  A+DLL+ VVSL PEYAEGWN+RA+
Sbjct:   60 LFSKLASAKSKPE-ADKIARDIQIAWLQSGSDTVDVLMERAATALRSDDTGLALDLLDVVVSLRPEYAEGWNRRAS 134          
BLAST of mRNA_P-wetherbeei_contig6202.3.1 vs. uniprot
Match: A0A1N6XM37_9HYPH (Tetratricopeptide repeat-containing protein n=2 Tax=unclassified Bosea TaxID=2653178 RepID=A0A1N6XM37_9HYPH)

HSP 1 Score: 70.5 bits (171), Expect = 7.370e-12
Identity = 38/87 (43.68%), Postives = 54/87 (62.07%), Query Frame = 1
Query:    1 ADQRHP--QLVPLFEKLMNKDMAPEEARAIEGQIWTLWQASGSDTTDVLLARVDAFLREDASEPAIDLLNEVVSLSPEYAEGWNKRA 255
            A QR P   L  LF++L +    PEEA+ I  QI   W  SGSDT D+L+ R    +R   +E A++LL+ ++SL P++AE WN+RA
Sbjct:   45 APQRRPPASLETLFQRLHDAK-TPEEAKGIATQIQRRWARSGSDTADLLMTRAQEAIRNKQTEIAVELLDRIISLQPDWAEAWNQRA 130          
BLAST of mRNA_P-wetherbeei_contig6202.3.1 vs. uniprot
Match: A0A2S9ITR9_9HYPH (Uncharacterized protein n=1 Tax=Phyllobacterium phragmitis TaxID=2670329 RepID=A0A2S9ITR9_9HYPH)

HSP 1 Score: 70.5 bits (171), Expect = 7.490e-12
Identity = 38/86 (44.19%), Postives = 55/86 (63.95%), Query Frame = 1
Query:    1 ADQRHPQLVPLFEKLMNKDMAPEEARAIEGQIWTLWQASGSDTTDVLLARVDAFLREDASEPAIDLLNEVVSLSPEYAEGWNKRAT 258
            A +R  +L  LF +L  K     +A+ I G+I++LW  SGS T D+++   +A +RE     A+D LNE+V L P+YAEGWN+RAT
Sbjct:   48 AQKRTAELDRLFLEL-RKAHDETKAKRIAGEIYSLWNQSGSATVDLMMQWANAAIREKKYPVALDFLNEIVVLKPDYAEGWNRRAT 132          
BLAST of mRNA_P-wetherbeei_contig6202.3.1 vs. uniprot
Match: UPI001680EB65 (tetratricopeptide repeat protein n=1 Tax=Roseibium aggregatum TaxID=187304 RepID=UPI001680EB65)

HSP 1 Score: 70.5 bits (171), Expect = 8.630e-12
Identity = 39/76 (51.32%), Postives = 51/76 (67.11%), Query Frame = 1
Query:   31 LFEKLMNKDMAPEEARAIEGQIWTLWQASGSDTTDVLLARVDAFLREDASEPAIDLLNEVVSLSPEYAEGWNKRAT 258
            LF+KL   +  PE+A AI  QI   W  SGSDT +VL+ R  A LR +    A+DLL+ VV+L P++AEGWN+RAT
Sbjct:   67 LFKKLAAAE-TPEQALAIGQQIQAKWLDSGSDTVNVLMTRAAAALRGNKYGLALDLLDVVVTLKPDFAEGWNRRAT 141          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6202.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3C0TRX2_9PROT9.680e-2838.41Uncharacterized protein n=1 Tax=Alphaproteobacteri... [more]
A0A2P5VMZ5_9PROT1.010e-1447.67Uncharacterized protein (Fragment) n=1 Tax=Alphapr... [more]
A0A2E9Y631_9PROT7.090e-1344.19Uncharacterized protein n=1 Tax=Rhodospirillaceae ... [more]
A0A7X4C1N7_9PROT8.210e-1341.86Tetratricopeptide repeat protein n=1 Tax=Alphaprot... [more]
A0A352GHB1_9PROT1.020e-1244.19Uncharacterized protein (Fragment) n=1 Tax=Rhodosp... [more]
UPI000C199C994.620e-1245.07hypothetical protein n=1 Tax=Pararhizobium halofla... [more]
UPI001AD8FDB75.550e-1252.63tetratricopeptide repeat protein n=1 Tax=Roseibium... [more]
A0A1N6XM37_9HYPH7.370e-1243.68Tetratricopeptide repeat-containing protein n=2 Ta... [more]
A0A2S9ITR9_9HYPH7.490e-1244.19Uncharacterized protein n=1 Tax=Phyllobacterium ph... [more]
UPI001680EB658.630e-1251.32tetratricopeptide repeat protein n=1 Tax=Roseibium... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6202contigP-wetherbeei_contig6202:1924..2418 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1429916.X566_13720
Preferred nameMA20_05980
PFAMsTPR_16,TPR_2,TPR_6,TPR_8
Model size495
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.6e-13
EggNOG OGsCOG0457@1|root,COG0457@2|Bacteria,1N0DE@1224|Proteobacteria,2UCGA@28211|Alphaproteobacteria,3JTSW@41294|Bradyrhizobiaceae
DescriptionTetratricopeptide repeat
Cds size495
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186896.7033486-CDS-P-wetherbeei_contig6202:1923..24181683186896.7033486-CDS-P-wetherbeei_contig6202:1923..2418Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6202 1924..2418 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6202.3.1prot_P-wetherbeei_contig6202.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6202 1924..2418 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6202.3.1

>prot_P-wetherbeei_contig6202.3.1 ID=prot_P-wetherbeei_contig6202.3.1|Name=mRNA_P-wetherbeei_contig6202.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=165bp
ADQRHPQLVPLFEKLMNKDMAPEEARAIEGQIWTLWQASGSDTTDVLLAR
VDAFLREDASEPAIDLLNEVVSLSPEYAEGWNKRATAFFMRDDYKAALQD
VERTLRLEPRHFGAWSGLGTILLAMGEDARALQAYQRALQINPHLKDIAK
EAERLELTVKGRGI*
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mRNA from alignment at P-wetherbeei_contig6202:1924..2418+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6202.3.1 ID=mRNA_P-wetherbeei_contig6202.3.1|Name=mRNA_P-wetherbeei_contig6202.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=495bp|location=Sequence derived from alignment at P-wetherbeei_contig6202:1924..2418+ (Phaeothamnion wetherbeei SAG_119_79)
GCCGATCAGCGTCATCCACAGCTTGTCCCCTTGTTTGAGAAGCTGATGAA CAAGGATATGGCGCCAGAAGAGGCCCGTGCGATAGAAGGCCAGATCTGGA CCCTGTGGCAGGCTTCGGGCAGCGACACGACAGATGTGTTGTTGGCGCGG GTGGACGCATTCCTGCGCGAGGACGCCTCTGAACCAGCGATTGATCTGCT GAATGAGGTTGTCAGCCTGTCCCCGGAATATGCCGAGGGCTGGAACAAGC GGGCCACGGCGTTTTTTATGCGGGATGATTATAAAGCGGCCCTGCAAGAC GTTGAACGCACCTTGCGTCTGGAACCGAGACATTTTGGGGCATGGTCCGG CCTTGGCACCATTCTGCTGGCAATGGGCGAAGACGCCAGGGCATTGCAGG CCTATCAACGCGCGTTGCAGATCAATCCGCATCTGAAAGATATTGCCAAA GAAGCAGAACGTCTGGAATTGACCGTCAAGGGACGCGGCATTTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6202:1924..2418+

>mRNA_P-wetherbeei_contig6202.3.1 ID=mRNA_P-wetherbeei_contig6202.3.1|Name=mRNA_P-wetherbeei_contig6202.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=495bp|location=Sequence derived from alignment at P-wetherbeei_contig6202:1924..2418+ (Phaeothamnion wetherbeei SAG_119_79)
GCCGATCAGCGTCATCCACAGCTTGTCCCCTTGTTTGAGAAGCTGATGAA
CAAGGATATGGCGCCAGAAGAGGCCCGTGCGATAGAAGGCCAGATCTGGA
CCCTGTGGCAGGCTTCGGGCAGCGACACGACAGATGTGTTGTTGGCGCGG
GTGGACGCATTCCTGCGCGAGGACGCCTCTGAACCAGCGATTGATCTGCT
GAATGAGGTTGTCAGCCTGTCCCCGGAATATGCCGAGGGCTGGAACAAGC
GGGCCACGGCGTTTTTTATGCGGGATGATTATAAAGCGGCCCTGCAAGAC
GTTGAACGCACCTTGCGTCTGGAACCGAGACATTTTGGGGCATGGTCCGG
CCTTGGCACCATTCTGCTGGCAATGGGCGAAGACGCCAGGGCATTGCAGG
CCTATCAACGCGCGTTGCAGATCAATCCGCATCTGAAAGATATTGCCAAA
GAAGCAGAACGTCTGGAATTGACCGTCAAGGGACGCGGCATTTAA
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