mRNA_P-wetherbeei_contig6201.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6201.1.1
Unique NamemRNA_P-wetherbeei_contig6201.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6201.1.1 vs. uniprot
Match: A0A835ZHC0_9STRA (mRNA_cap_enzyme domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHC0_9STRA)

HSP 1 Score: 101 bits (252), Expect = 6.760e-21
Identity = 57/110 (51.82%), Postives = 66/110 (60.00%), Query Frame = 2
Query:   26 FPGAMPSNLCRAHVAAVQEGSYFVSEKTDGVRYLMVVCQSADGRKGCVLVDRKMHAFAVEGGDVIAAHLAAAAGSAAPGVADAVRKAAGGTLIGTVLDGELVHHRGRNRA 355
            FPGAMP N+CRA +AAVQ G+YF+SEKTDGVRYL+VV +  +G   CVLVDRKM  FAV GG  +A    A                      GTVLDGELVH  G + A
Sbjct:  384 FPGAMPVNMCRADIAAVQGGAYFISEKTDGVRYLLVVTEEGEGGGACVLVDRKMGCFAVAGGAALAKVFGA----------------------GTVLDGELVHRSGAHGA 471          
BLAST of mRNA_P-wetherbeei_contig6201.1.1 vs. uniprot
Match: A0A7S2REU1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2REU1_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 1.200e-17
Identity = 54/133 (40.60%), Postives = 71/133 (53.38%), Query Frame = 2
Query:   26 FPGAMPSNLCRAHVAAVQEGSYFVSEKTDGVRYLMVVCQSADGRKGCVLVDRKMHAFAVEGGDVIAAHLAAAAGSAAPGVADAVRKAAGGTLIGTVLDGELVHHRGRNRAVFMAFDLLALGQTSEMGSVFAMR 424
            FPGAMP N+C+ H+  +Q   YFV+EKTDGVR L+V     +G   CVLVDR+M   A                 + PG          G  +GTV+DGE+V++    RAVFM FD+L  G  S +G +F  R
Sbjct:  405 FPGAMPVNMCKRHIREIQSKPYFVTEKTDGVRQLLVAVSDPNGGARCVLVDRQMQTRAFP--------------DSGPG----------GLPVGTVVDGEVVYNFTYRRAVFMVFDILRYGGESLVGRLFTER 513          
BLAST of mRNA_P-wetherbeei_contig6201.1.1 vs. uniprot
Match: D0NWZ3_PHYIT (Uncharacterized protein n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0NWZ3_PHYIT)

HSP 1 Score: 78.2 bits (191), Expect = 6.800e-13
Identity = 51/126 (40.48%), Postives = 63/126 (50.00%), Query Frame = 2
Query:   23 RFPGAMPSNLCRAHVAAVQEGSYFVSEKTDGVRYLMVVCQSADGRKGCVLVDRKMHAFAVEGGDVIAAHLAAAAGSAAPGVADAVRKAAGGTLIGTVLDGELVHHRGRNRAVFMAFDLLALGQTSE 400
            +F G MP    R H+  VQ   YFVSEKTDGVRY +VV          VLVDR   AFA  G D++   L                        GTVLDGELV H+   R VF++FD++A G ++E
Sbjct:  296 KFSGTMPVGFARWHIPLVQSREYFVSEKTDGVRYFLVVAGGTT-----VLVDRSNAAFAASGLDLLKLVLPE----------------------GTVLDGELVFHQKDKRYVFISFDIIATGPSAE 394          
BLAST of mRNA_P-wetherbeei_contig6201.1.1 vs. uniprot
Match: H3GV11_PHYRM (Uncharacterized protein n=22 Tax=Peronosporaceae TaxID=4777 RepID=H3GV11_PHYRM)

HSP 1 Score: 77.8 bits (190), Expect = 9.400e-13
Identity = 51/126 (40.48%), Postives = 62/126 (49.21%), Query Frame = 2
Query:   23 RFPGAMPSNLCRAHVAAVQEGSYFVSEKTDGVRYLMVVCQSADGRKGCVLVDRKMHAFAVEGGDVIAAHLAAAAGSAAPGVADAVRKAAGGTLIGTVLDGELVHHRGRNRAVFMAFDLLALGQTSE 400
            +F G MP    R H+  VQ   YFVSEKTDGVRY +VV          VLVDR    FA  G D++   L                        GTVLDGELV H+   R VF+AFD++A G ++E
Sbjct:  336 KFSGTMPVGFARWHIPLVQSREYFVSEKTDGVRYFLVVAGGTT-----VLVDRSNSPFAASGLDLLKLVLPE----------------------GTVLDGELVFHQKDKRYVFIAFDIIATGPSAE 434          
BLAST of mRNA_P-wetherbeei_contig6201.1.1 vs. uniprot
Match: A0A7S0MLD4_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0MLD4_9CRYP)

HSP 1 Score: 73.9 bits (180), Expect = 2.140e-12
Identity = 53/125 (42.40%), Postives = 66/125 (52.80%), Query Frame = 2
Query:   11 GGE-VRFPGAMPSNLCRAHVAAVQEGSYFVSEKTDGVRYLMVVCQSADGRKGCVLVDRKMHAFAVEGGDVIAAHLAAAAGSAAPGVADAVRKAAGGTLIGTVLDGELVHHRGRNRAVFMAFDLLA 382
            GGE   FPG MP    R  +  V    YFVSEKTDGVRY +VV +  +G+   VL+DRK +A+                   APG+ +A    A G   GTVLDGE+V +R   R VFM FD +A
Sbjct:   24 GGERADFPGTMPVGFSRRALRQVMAEDYFVSEKTDGVRYFLVVVER-EGKAAGVLLDRKFNAYT------------------APGIDEA----AAGLGPGTVLDGEVVWNRSWKRDVFMVFDGMA 125          
BLAST of mRNA_P-wetherbeei_contig6201.1.1 vs. uniprot
Match: K3W9X5_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W9X5_GLOUD)

HSP 1 Score: 76.3 bits (186), Expect = 3.140e-12
Identity = 50/126 (39.68%), Postives = 60/126 (47.62%), Query Frame = 2
Query:   23 RFPGAMPSNLCRAHVAAVQEGSYFVSEKTDGVRYLMVVCQSADGRKGCVLVDRKMHAFAVEGGDVIAAHLAAAAGSAAPGVADAVRKAAGGTLIGTVLDGELVHHRGRNRAVFMAFDLLALGQTSE 400
            +F G MP    R H+  V+   YFVSEKTDGVRY +VV   A      VLVDR    F   G D++   L                        GTVLDGELV H+  NR VFM FD++A G +  
Sbjct:  338 KFSGTMPVGFARWHIPLVKTREYFVSEKTDGVRYFLVVAGDA-----VVLVDRSNAPFVASGLDLLKLVLPE----------------------GTVLDGELVFHQRENRYVFMVFDIIATGPSQS 436          
BLAST of mRNA_P-wetherbeei_contig6201.1.1 vs. uniprot
Match: K0TI32_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TI32_THAOC)

HSP 1 Score: 76.3 bits (186), Expect = 3.270e-12
Identity = 54/128 (42.19%), Postives = 65/128 (50.78%), Query Frame = 2
Query:   26 FPGAMPSNLCRAHVAAVQ--EGSYFVSEKTDGVRYLMVVCQSADGRKGCVLVDRKMHAFAVEGGDVIAAHLAAAAGSAAPGVADAVRKAAGGTLIGTVLDGELVHHRGRNRAVFMAFDLLALGQTSEM 403
            F G MP N  R ++  VQ  EG YF+SEKTDGVRYLMV   S      CVLVDR  H    E G         A       V  A++        GTVLDGE+V HR   R +F+ FD+LA+  T  +
Sbjct:  404 FLGCMPVNFARHNIEEVQRSEGGYFLSEKTDGVRYLMVFTGST-----CVLVDRASH----ESGKAYQPKHRMAGDEPMDSVVKAIKP-------GTVLDGEVVVHRKLRRPIFIVFDVLAISATEPI 515          
BLAST of mRNA_P-wetherbeei_contig6201.1.1 vs. uniprot
Match: A0A8K1CCX5_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CCX5_PYTOL)

HSP 1 Score: 75.9 bits (185), Expect = 4.230e-12
Identity = 49/126 (38.89%), Postives = 61/126 (48.41%), Query Frame = 2
Query:   23 RFPGAMPSNLCRAHVAAVQEGSYFVSEKTDGVRYLMVVCQSADGRKGCVLVDRKMHAFAVEGGDVIAAHLAAAAGSAAPGVADAVRKAAGGTLIGTVLDGELVHHRGRNRAVFMAFDLLALGQTSE 400
            +F G MP    R H+  V+E  Y+VSEKTDGVRY +VV          VLVDR   AF   G D++   L                        GTVLDGELV H+   R VFM FD++A G ++ 
Sbjct:  330 KFAGTMPVGFARWHIPLVKEREYYVSEKTDGVRYFLVVAGGTT-----VLVDRSNTAFTTSGMDLLRLVLPE----------------------GTVLDGELVMHQKEKRYVFMVFDIIATGPSAS 428          
BLAST of mRNA_P-wetherbeei_contig6201.1.1 vs. uniprot
Match: A0A484DRL0_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DRL0_BRELC)

HSP 1 Score: 74.3 bits (181), Expect = 1.420e-11
Identity = 50/126 (39.68%), Postives = 64/126 (50.79%), Query Frame = 2
Query:   23 RFPGAMPSNLCRAHVAAVQEGSYFVSEKTDGVRYLMVVCQSADGRKGCVLVDRKMHAFAVEGGDVIAAHLAAAAGSAAPGVADAVRKAAGGTLIGTVLDGELVHHRGRNRAVFMAFDLLALGQTSE 400
            +F G MP    R H+  VQ   YFVSEKTDGVR+ +VV   A G+   VL+DR    FA  G D++   L                        GTVLDGELV H+   R V++AFD++A G  +E
Sbjct:  336 KFSGTMPVGFARWHIPLVQSREYFVSEKTDGVRFFLVV---AGGKT--VLIDRSNSPFAASGLDLLKLVLPE----------------------GTVLDGELVFHQKDKRYVYIAFDIIATGPFAE 434          
BLAST of mRNA_P-wetherbeei_contig6201.1.1 vs. uniprot
Match: A0A024GCJ9_9STRA (Uncharacterized protein n=2 Tax=Albugo TaxID=65356 RepID=A0A024GCJ9_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 1.420e-11
Identity = 51/130 (39.23%), Postives = 61/130 (46.92%), Query Frame = 2
Query:   11 GGEVRFPGAMPSNLCRAHVAAVQEGSYFVSEKTDGVRYLMVVCQSADGRKGCVLVDRKMHAFAVEGGDVIAAHLAAAAGSAAPGVADAVRKAAGGTLIGTVLDGELVHHRGRNRAVFMAFDLLALGQTSE 400
            G   RF G MP    R H+  V++G Y VSEKTDGVRY +VV   +      VLVDR   A+   G D +   L                        GTVLDGE V H+   R VFMAFD++A G T  
Sbjct:  336 GNRNRFNGTMPVGFARWHIPFVKKGEYHVSEKTDGVRYFLVVAGGST-----VLVDRSNAAYTTCGIDQLKLVLPE----------------------GTVLDGEFVFHQKEKRYVFMAFDIIATGPTEN 438          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6201.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZHC0_9STRA6.760e-2151.82mRNA_cap_enzyme domain-containing protein n=1 Tax=... [more]
A0A7S2REU1_9STRA1.200e-1740.60Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
D0NWZ3_PHYIT6.800e-1340.48Uncharacterized protein n=1 Tax=Phytophthora infes... [more]
H3GV11_PHYRM9.400e-1340.48Uncharacterized protein n=22 Tax=Peronosporaceae T... [more]
A0A7S0MLD4_9CRYP2.140e-1242.40Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
K3W9X5_GLOUD3.140e-1239.68Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
K0TI32_THAOC3.270e-1242.19Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A8K1CCX5_PYTOL4.230e-1238.89Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A484DRL0_BRELC1.420e-1139.68Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
A0A024GCJ9_9STRA1.420e-1139.23Uncharacterized protein n=2 Tax=Albugo TaxID=65356... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6201contigP-wetherbeei_contig6201:581..1646 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size737
Hectar predicted targeting categoryother localisation
Exons2
Cds size558
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186896.4801128-UTR-P-wetherbeei_contig6201:580..7591683186896.4801128-UTR-P-wetherbeei_contig6201:580..759Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6201 581..759 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186896.4939702-CDS-P-wetherbeei_contig6201:759..11751683186896.4939702-CDS-P-wetherbeei_contig6201:759..1175Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6201 760..1175 -
1683186896.515147-CDS-P-wetherbeei_contig6201:1504..16461683186896.515147-CDS-P-wetherbeei_contig6201:1504..1646Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6201 1505..1646 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6201.1.1prot_P-wetherbeei_contig6201.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6201 760..1646 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6201.1.1

>prot_P-wetherbeei_contig6201.1.1 ID=prot_P-wetherbeei_contig6201.1.1|Name=mRNA_P-wetherbeei_contig6201.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=186bp
RRRGRGGAVSGGDAVEFVPGARGGSAGGELLREREDGRRTLPDGRLPICG
WAKGLRPRRPQDARIRGGGRRCHRRPPRCRCRQRRAGGRRCRPQGSRWNP
DRNCAGWRAGAPSRPEPGGVHGIRPAGAWPDERDGERLRHALRPRQVREC
GPFVSFSWCWWCLQLHGAMVLAEEVTAAELVVAVA*
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mRNA from alignment at P-wetherbeei_contig6201:581..1646-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6201.1.1 ID=mRNA_P-wetherbeei_contig6201.1.1|Name=mRNA_P-wetherbeei_contig6201.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1066bp|location=Sequence derived from alignment at P-wetherbeei_contig6201:581..1646- (Phaeothamnion wetherbeei SAG_119_79)
CGGCGTAGAGGGCGGGGAGGTGCGGTTTCCGGGGGCGATGCCGTCGAATT TGTGCCGGGCGCACGTGGCGGCAGTGCAGGAGGGGAGCTACTTCGTGAGC GAGAAGACGGACGGCGTACGTTACCTGATGGTCGTCTGCCAAGTGAGGCG GAAGGAATGGGGAGGGGAGAACAGCCGTTGAGAGGAAGAAGAGGCGGACA GCGTCGAATGAGGTTGCATCGCTTTGCATTCGGGTTTCGGTTGCTATCGT CGAACAGTGTTAGCAGTTTGTATATCGTTGTTGTGCCACATGGTGCTTGG AGCGGCGACGAAGGCGGTGGCAGAGGTTGGGAATGACGGGTTTTTCGTTC TGCCCAGCCGTATCTCAATGGCTACGTGTCCTGCTTTGGCGCTTCTGCCG CCTGCTCTTCCCTGATCCATTCCTTTTCTCCCTCAAATGCGTTTGGGGTG TACACCCACGGCGCATCACAGTCTGCGGATGGGCGAAAGGGCTGCGTCCT CGTCGACCGCAAGATGCACGCATTCGCGGTGGAGGGCGGCGATGTCATCG CCGCCCACCTCGCTGCCGCTGCCGGCAGCGCCGCGCCGGGGGTCGCCGAT GCCGTCCGCAAGGCAGCCGGTGGAACCCTGATAGGAACTGTGCTGGATGG AGAGCTGGTGCACCATCGCGGCCGGAACCGGGCGGTGTTCATGGCATTCG ACCTGCTGGCGCTTGGCCAGACGAGCGAGATGGGGAGCGTCTTCGCCATG CGCTTCGGCCTCGCCAGGTGCGTGAGTGTGGGCCTTTCGTTTCGTTTTCG TGGTGTTGGTGGTGTTTGCAGTTGCATGGGGCAATGGTATTGGCGGAAGA AGTGACGGCGGCGGAGCTGGTGGTGGCGGTGGCATGACAGTGGCGGCGGT AGCGTCTGTAACGGTTACGGCAGCAGCGGCGACGAAACTATGGCAGCGGT CCCTTGATGGTTCTTTTCTGAACGAAATGCGCTGCCTTTATCCAACTGTG CTCTTTCTTGTCTTAGTTTTTCCTAAATAAGTTGGCTTCTCCCTCTCATG AGCCAAGTTTGCCTCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6201:581..1646-

>mRNA_P-wetherbeei_contig6201.1.1 ID=mRNA_P-wetherbeei_contig6201.1.1|Name=mRNA_P-wetherbeei_contig6201.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=558bp|location=Sequence derived from alignment at P-wetherbeei_contig6201:581..1646- (Phaeothamnion wetherbeei SAG_119_79)
CGGCGTAGAGGGCGGGGAGGTGCGGTTTCCGGGGGCGATGCCGTCGAATT
TGTGCCGGGCGCACGTGGCGGCAGTGCAGGAGGGGAGCTACTTCGTGAGC
GAGAAGACGGACGGCGTACGTTACCTGATGGTCGTCTGCCAATCTGCGGA
TGGGCGAAAGGGCTGCGTCCTCGTCGACCGCAAGATGCACGCATTCGCGG
TGGAGGGCGGCGATGTCATCGCCGCCCACCTCGCTGCCGCTGCCGGCAGC
GCCGCGCCGGGGGTCGCCGATGCCGTCCGCAAGGCAGCCGGTGGAACCCT
GATAGGAACTGTGCTGGATGGAGAGCTGGTGCACCATCGCGGCCGGAACC
GGGCGGTGTTCATGGCATTCGACCTGCTGGCGCTTGGCCAGACGAGCGAG
ATGGGGAGCGTCTTCGCCATGCGCTTCGGCCTCGCCAGGTGCGTGAGTGT
GGGCCTTTCGTTTCGTTTTCGTGGTGTTGGTGGTGTTTGCAGTTGCATGG
GGCAATGGTATTGGCGGAAGAAGTGACGGCGGCGGAGCTGGTGGTGGCGG
TGGCATGA
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