mRNA_P-wetherbeei_contig6197.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6197.1.1
Unique NamemRNA_P-wetherbeei_contig6197.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6197.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6197contigP-wetherbeei_contig6197:118..1372 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size590
Hectar predicted targeting categoryother localisation
Exons2
Cds size537
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186895.6561742-UTR-P-wetherbeei_contig6197:117..1691683186895.6561742-UTR-P-wetherbeei_contig6197:117..169Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6197 118..169 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186895.6649148-CDS-P-wetherbeei_contig6197:169..6141683186895.6649148-CDS-P-wetherbeei_contig6197:169..614Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6197 170..614 -
1683186895.673248-CDS-P-wetherbeei_contig6197:1280..13721683186895.673248-CDS-P-wetherbeei_contig6197:1280..1372Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6197 1281..1372 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6197.1.1prot_P-wetherbeei_contig6197.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6197 170..1372 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6197.1.1

>prot_P-wetherbeei_contig6197.1.1 ID=prot_P-wetherbeei_contig6197.1.1|Name=mRNA_P-wetherbeei_contig6197.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=179bp
GASGRRRQSKVRCSIRWTRTRYSTRSTSTRRGGHDADDDANDDTDADADI
NAGGEEEETEDKDASEKKEAASAVAGGDASATTPKAARRRRRAESSEDVA
AEAPVPESAAAQEGDPVEAAVRGKAAGVKAKKAGGSSNVNVGPGSTEKLV
SKRTKLHEAAAREKDSVTTPGRKKKRSK*
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mRNA from alignment at P-wetherbeei_contig6197:118..1372-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6197.1.1 ID=mRNA_P-wetherbeei_contig6197.1.1|Name=mRNA_P-wetherbeei_contig6197.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1255bp|location=Sequence derived from alignment at P-wetherbeei_contig6197:118..1372- (Phaeothamnion wetherbeei SAG_119_79)
GGCGCGAGTGGGCGGCGGCGACAGTCGAAGGTGCGCTGCTCTATTCGCTG
GACGAGGACACGCTATTCGACCCGTTCGACATCGACGAGGCGCTGACGCC
GGCGGCGGTGGTGGCGGCGTTGGGGCGGCGGGAGTGGGGGCGGGCGCTGA
CGGCGGCACTGCACCTCAACGAGGAGGGGCTGGTGTGCGAGGCGCTGGCA
GCGGTGCCGGCGGATCAAGTGCCGCTGACGGCGGCGGCGGTGCCGGACCA
GTACGCGTCGCGGCTGTTGGCGGTGCTGGCCGGGCGGCTGCAGAAGTCGC
GGCGGCTCGAGTACCACCTCGTCTGGTGCCAGGTGAGAGATTGGCAGAAA
GGGAGGATGGGAACGGGTTGTACGGGCGAGATTGGAACGGTAGGCCACGA
AATCTGCGGAATTCCTCAAGCTCAGCTCCGGTGAATCGCTTGCTTTCTTT
GATTGGCACACGTGGGAGAAATAGGCTTGTCAATGCTTCTTACCGTGGTC
TTCATCGCTAAACCATTTGCTTTCTTGCTGCACTTATCTTTCTGCGACAT
GAAATCGATTGCAGGCGGTGCTCCAAGCCCACGGGTGCCACATCCGCGAC
CGCAGCCGCGGCTCGCGCATGCTCGGCGCGCTGCGCTCCGTGCAGAGGGC
CCTCGCGCAGTGCCAGACGGATCTCATGAAGCTCGTCAACGACAACCTCT
ACACGCTGCGCTTCCTCGGAGCGCCGGCGCCGGGGGGGGCAGCCGCCGTC
GCCGACGCCGGTGGTCACGATGCGGATGACGATGCGAACGATGACACCGA
CGCCGATGCTGACATCAACGCCGGCGGCGAAGAGGAGGAGACAGAGGATA
AGGATGCGTCAGAGAAAAAGGAAGCTGCCTCAGCGGTTGCCGGAGGCGAT
GCGTCGGCGACTACGCCGAAAGCGGCGCGACGACGGCGGCGTGCGGAAAG
CTCGGAAGACGTTGCGGCCGAGGCGCCTGTTCCGGAATCGGCAGCAGCGC
AAGAAGGAGACCCCGTTGAAGCTGCAGTGAGGGGGAAGGCGGCTGGCGTT
AAGGCGAAGAAAGCGGGCGGATCGTCAAATGTGAATGTTGGCCCGGGCAG
CACTGAAAAGCTTGTCTCGAAGCGTACAAAGCTGCACGAGGCTGCCGCGA
GGGAGAAAGACTCCGTCACCACTCCCGGGCGGAAGAAAAAGCGGAGTAAA
TAAAAAAGCACCTCGCGGGAAACCAGCCAACATGTGGTTCCGCCTCGCCC
TCGAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6197:118..1372-

>mRNA_P-wetherbeei_contig6197.1.1 ID=mRNA_P-wetherbeei_contig6197.1.1|Name=mRNA_P-wetherbeei_contig6197.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=537bp|location=Sequence derived from alignment at P-wetherbeei_contig6197:118..1372- (Phaeothamnion wetherbeei SAG_119_79)
GGCGCGAGTGGGCGGCGGCGACAGTCGAAGGTGCGCTGCTCTATTCGCTG
GACGAGGACACGCTATTCGACCCGTTCGACATCGACGAGGCGCGGTGGTC
ACGATGCGGATGACGATGCGAACGATGACACCGACGCCGATGCTGACATC
AACGCCGGCGGCGAAGAGGAGGAGACAGAGGATAAGGATGCGTCAGAGAA
AAAGGAAGCTGCCTCAGCGGTTGCCGGAGGCGATGCGTCGGCGACTACGC
CGAAAGCGGCGCGACGACGGCGGCGTGCGGAAAGCTCGGAAGACGTTGCG
GCCGAGGCGCCTGTTCCGGAATCGGCAGCAGCGCAAGAAGGAGACCCCGT
TGAAGCTGCAGTGAGGGGGAAGGCGGCTGGCGTTAAGGCGAAGAAAGCGG
GCGGATCGTCAAATGTGAATGTTGGCCCGGGCAGCACTGAAAAGCTTGTC
TCGAAGCGTACAAAGCTGCACGAGGCTGCCGCGAGGGAGAAAGACTCCGT
CACCACTCCCGGGCGGAAGAAAAAGCGGAGTAAATAA
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