mRNA_P-wetherbeei_contig6184.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6184.1.1
Unique NamemRNA_P-wetherbeei_contig6184.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6184.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6184contigP-wetherbeei_contig6184:2206..3275 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1070
Hectar predicted targeting categoryother localisation
Exons1
Cds size708
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186894.6278958-UTR-P-wetherbeei_contig6184:2205..25601683186894.6278958-UTR-P-wetherbeei_contig6184:2205..2560Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6184 2206..2560 +
1683186894.6493077-UTR-P-wetherbeei_contig6184:3268..32751683186894.6493077-UTR-P-wetherbeei_contig6184:3268..3275Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6184 3269..3275 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186894.6386323-CDS-P-wetherbeei_contig6184:2560..32681683186894.6386323-CDS-P-wetherbeei_contig6184:2560..3268Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6184 2561..3268 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6184.1.1prot_P-wetherbeei_contig6184.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6184 2561..3268 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6184.1.1

>prot_P-wetherbeei_contig6184.1.1 ID=prot_P-wetherbeei_contig6184.1.1|Name=mRNA_P-wetherbeei_contig6184.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=236bp
MSRFISARPGRLVVTWLGGCPDLTGGGSPRIVCYVQPTSLRSAANAGGRQ
RRQRWAGRITGLRGTQGKAPHQSESTHPLGSETVLWVSGGRHQHQVASTA
TTMVVIARAGSGVGYGRRRRQRLQGRRRIVAIHGGGRLAHGWGRARPCGV
RMGVESLDGANISIGECSHPASTRIPSHGRGSVQCSSLRTVQLPANSGHV
GAVALKGAKGQTAESSVGDRAAGLGQVTRPRFHNT*
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mRNA from alignment at P-wetherbeei_contig6184:2206..3275+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6184.1.1 ID=mRNA_P-wetherbeei_contig6184.1.1|Name=mRNA_P-wetherbeei_contig6184.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1070bp|location=Sequence derived from alignment at P-wetherbeei_contig6184:2206..3275+ (Phaeothamnion wetherbeei SAG_119_79)
ATCGCCGCCGCTGTTGTGGCCGCTGCTCTGTTCGCGCTTTGCTAAGCGGC
AGGCGCGGGCGACAGGGCCGCTCAGCAGGCGGGCGGCTGCGACTGCGGGT
AGTCGTATTATGTCTTCGCCGTTTGTCCGCGCATTCCCGGAAGCGCTGCC
AGGCAGCGGCGGCGATGCCAAGTTATCTCCCCGTTTGCTTCTCCCCCTTA
AGGAAAAAGAGTCATCAAACGGGGAAAATGGGCAACAGAACAACCCGGGC
GCCCATCTCGCCGGCCGCTCCATGCGGTTCGCCTTTTCGGCGACTGCGCT
GTGGCTAGAGTGATCGGCGGGCGCTCCGGCAGGGAAAAGGCACAAAACGG
GGCGAATGTCCAGATTTATATCCGCAAGGCCGGGTCGACTCGTCGTTACA
TGGCTCGGCGGTTGCCCTGATTTGACGGGCGGCGGTTCGCCGCGGATTGT
ATGTTACGTGCAGCCCACCTCTCTCCGTTCCGCCGCGAACGCCGGTGGAC
GGCAGCGGCGGCAGCGGTGGGCCGGACGCATCACGGGATTGAGAGGTACA
CAAGGGAAAGCACCGCATCAGAGCGAAAGCACACACCCCTTGGGGTCGGA
GACGGTCCTATGGGTAAGCGGAGGGCGACATCAACACCAGGTGGCCTCTA
CCGCAACGACAATGGTGGTCATAGCGCGGGCCGGCAGCGGCGTCGGCTAC
GGTCGTCGGCGGCGGCAGCGTCTGCAGGGACGGCGGCGGATAGTGGCTAT
ACATGGCGGCGGGCGGCTCGCTCACGGCTGGGGCCGGGCCCGCCCTTGCG
GCGTTCGGATGGGCGTAGAAAGCCTAGATGGAGCAAATATCAGCATCGGG
GAATGCAGCCATCCCGCATCGACGCGGATCCCTTCTCACGGTCGCGGAAG
CGTACAGTGCAGCTCCCTGCGTACAGTGCAGCTCCCTGCGAACAGCGGGC
ACGTGGGCGCGGTGGCGCTTAAGGGGGCGAAAGGGCAAACCGCCGAGAGC
AGCGTCGGAGACCGTGCCGCTGGGCTTGGGCAAGTTACTCGCCCGCGGTT
TCACAATACATAGAACCCGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6184:2206..3275+

>mRNA_P-wetherbeei_contig6184.1.1 ID=mRNA_P-wetherbeei_contig6184.1.1|Name=mRNA_P-wetherbeei_contig6184.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=708bp|location=Sequence derived from alignment at P-wetherbeei_contig6184:2206..3275+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTCCAGATTTATATCCGCAAGGCCGGGTCGACTCGTCGTTACATGGCT
CGGCGGTTGCCCTGATTTGACGGGCGGCGGTTCGCCGCGGATTGTATGTT
ACGTGCAGCCCACCTCTCTCCGTTCCGCCGCGAACGCCGGTGGACGGCAG
CGGCGGCAGCGGTGGGCCGGACGCATCACGGGATTGAGAGGTACACAAGG
GAAAGCACCGCATCAGAGCGAAAGCACACACCCCTTGGGGTCGGAGACGG
TCCTATGGGTAAGCGGAGGGCGACATCAACACCAGGTGGCCTCTACCGCA
ACGACAATGGTGGTCATAGCGCGGGCCGGCAGCGGCGTCGGCTACGGTCG
TCGGCGGCGGCAGCGTCTGCAGGGACGGCGGCGGATAGTGGCTATACATG
GCGGCGGGCGGCTCGCTCACGGCTGGGGCCGGGCCCGCCCTTGCGGCGTT
CGGATGGGCGTAGAAAGCCTAGATGGAGCAAATATCAGCATCGGGGAATG
CAGCCATCCCGCATCGACGCGGATCCCTTCTCACGGTCGCGGAAGCGTAC
AGTGCAGCTCCCTGCGTACAGTGCAGCTCCCTGCGAACAGCGGGCACGTG
GGCGCGGTGGCGCTTAAGGGGGCGAAAGGGCAAACCGCCGAGAGCAGCGT
CGGAGACCGTGCCGCTGGGCTTGGGCAAGTTACTCGCCCGCGGTTTCACA
ATACATAG
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