mRNA_P-wetherbeei_contig6180.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6180.1.1
Unique NamemRNA_P-wetherbeei_contig6180.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6180.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6180contigP-wetherbeei_contig6180:2..3515 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2764
Hectar predicted targeting categoryother localisation
Exons5
Cds size2220
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6180.1.1prot_P-wetherbeei_contig6180.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6180 343..3312 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186894.4029975-UTR-P-wetherbeei_contig6180:1..3421683186894.4029975-UTR-P-wetherbeei_contig6180:1..342Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6180 2..342 -
1683186894.4553204-UTR-P-wetherbeei_contig6180:3312..35151683186894.4553204-UTR-P-wetherbeei_contig6180:3312..3515Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6180 3313..3515 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186894.4123986-CDS-P-wetherbeei_contig6180:342..4051683186894.4123986-CDS-P-wetherbeei_contig6180:342..405Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6180 343..405 -
1683186894.4215255-CDS-P-wetherbeei_contig6180:602..23991683186894.4215255-CDS-P-wetherbeei_contig6180:602..2399Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6180 603..2399 -
1683186894.4304216-CDS-P-wetherbeei_contig6180:2585..26401683186894.4304216-CDS-P-wetherbeei_contig6180:2585..2640Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6180 2586..2640 -
1683186894.4390879-CDS-P-wetherbeei_contig6180:2905..30721683186894.4390879-CDS-P-wetherbeei_contig6180:2905..3072Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6180 2906..3072 -
1683186894.4472284-CDS-P-wetherbeei_contig6180:3174..33121683186894.4472284-CDS-P-wetherbeei_contig6180:3174..3312Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6180 3175..3312 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6180.1.1

>prot_P-wetherbeei_contig6180.1.1 ID=prot_P-wetherbeei_contig6180.1.1|Name=mRNA_P-wetherbeei_contig6180.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=740bp
MTSGEDRELEGFMHSILRECAARLSGVQPEYSGTTGLRDQLELLAQIWRQ
KYVQKVTGGFAGVGRVHRRREEVFKKEDHEKGEGKVTLGDGVVPPTHRVV
FSPYPKPLWNPANRKPAAFMAPPRRPKSAASSLPSVGAQRNSKRPVVQVK
SVGGGPSAMAERAPKRPRDELGAGSDRGVSNGGATSFASGGAGVVSTAGG
NAGGGIGNGGTCNGGTCNGKPGNGGDSSSRNGVANNPDSGSNGDGDSSVP
GAGFSRNGGDGDGGDGGIAATRPRSGSFDAAAGAPLSWPLDGEPSGASAF
GDAGELCNGDVQPLKPLEQQPPPLPPSPPPLPPPPPAAAALAEPPSSGSP
LERRSPGTLSSGVYKAATNVTWMAGLGDEEFVGAFSGSGGSYGGIDPNEH
SEDDDVVNDADGNENDIEKLLMSDDDEENTYPAPPVAGSGVDAGGAMGSN
ATVTVTAAAAALVAAPADPTAAAAGSAAVAAAPAATSISPVVASPTLAAS
AVTTAINDGADGGMDVDVWDSSDARDIHETGSDPAALSNATVVGVAAGGG
TASGAATADERTFGGSGDSCGSGGSSSDVGGGNSGGGGNIGGGVSRSADG
GRDALKGGDDGGSGDGIRDNGGCSGAGGDLSGGAGGDLCVGAGGDLNSGG
NDPAEVDRDDNADADDSGGADDDIIDVERYVVRAGEPQPKNYIVGRFSRG
LVKAPNDMWRITLLAGNIKVGMAEGAFSRCVLSAAVDLD*
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mRNA from alignment at P-wetherbeei_contig6180:2..3515-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6180.1.1 ID=mRNA_P-wetherbeei_contig6180.1.1|Name=mRNA_P-wetherbeei_contig6180.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=3514bp|location=Sequence derived from alignment at P-wetherbeei_contig6180:2..3515- (Phaeothamnion wetherbeei SAG_119_79)
GCTAATTTGCCCAATTTTGTTTTGTGCATCCGGAACAGTTTTTCCGGCCG
CGATGCGCGCGCGGAAGGCGCCAAAGGGCTTTGAACGCTCAGTTGCTGTA
TACATCTCCCGTCAATAACGGATAAAAAGGCTTCGCATTGCGGCACAAGG
GTGAGCTGGACCTTTGCGTAAAGTTTTTGAACAAGACTACCTCCTCAGGC
GATATGACCTCTGGCGAAGACAGGGAGCTAGAAGGATTCATGCACAGCAT
CCTCCGCGAATGTGCTGCGCGATTAAGCGGCGTGCAGCCAGAATATTCGG
GGACGACTGGGCTGCGAGACCAACTGGAGCTCTTAGCACAGGTGAGGGTT
GCTTGCGGTTTCCGTGTAGAGTATATTTGTTGTCCTTAGCTTCTCCTGGC
TGAATGTTTCTCTCGATGCACCCCCGACCATCACTGGCTGCAGATATGGC
GCCAGAAATACGTTCAAAAGGTTACGGGCGGATTTGCTGGCGTCGGACGC
GTCCATCGTCGAAGGGAAGAGGTATTTAAGAAGGAGGACCACGAGAAAGG
AGAAGGAAAAGTTACGCTGGGGGATGGAGTCGTTCCTCCGACTCATCGAG
TCGTCTTCAGGTGAGCAGCTAGGCAAAACGTCCTTCTCTCTACGCTGCAT
CTTTTTCTTCCGAAAAAGCAGCCCTGGACCGATTGACGGGAATAATGAAA
AGGGGCCTTTCTTGTTCGGTGGGCCCTCACTTGTCTTGAATATTGAATGT
TTTGAAGGGCTGCAGTTACTCTCTCTCGGTACACATGAGAGGGCCGTCTT
TCCGTCAAGATTATCGATCCTCGCAGGTCTCACATGGTCTTTCTTTCCAC
TTTGTTCATTTGCCTCTCCAAGCAGTCCTTACCCGAAGCCGCTTTGGAAC
CCAGCAAACCGGAAGCCAGCAGCTTTCATGGTACGTTGCCACCTCGCGGA
CAGGAAGGACTGCCTCTCATTTTTCGGTGCATATAATAACAAGCTCCTGT
CGTTTGCGATGCGTCCATCTGCAAGTTTGGTCGGTGCGCATGGTTTCTCT
CCTTAACCTGACCGCTAACCCAATCATTTCGGCGACTTTCCTCGCTCTTT
CCTTGTGGCTTTGAAGGCGCCACCAAGACGGCCGAAGAGCGCCGCGTCGT
CGCTGCCCTCTGTGGGGGCCCAGCGGAACAGCAAGCGTCCTGTGGTCCAG
GTCAAGTCCGTCGGCGGGGGTCCCTCAGCGATGGCTGAGCGGGCTCCCAA
GCGCCCGCGGGACGAGTTGGGCGCCGGCAGTGATCGGGGCGTCAGCAACG
GCGGAGCCACATCGTTTGCCTCGGGCGGCGCAGGGGTTGTCTCCACTGCT
GGCGGCAATGCCGGTGGTGGTATTGGCAACGGCGGGACTTGCAACGGCGG
GACTTGCAACGGCAAGCCCGGCAACGGCGGCGACAGTAGCAGCCGCAATG
GCGTCGCCAACAACCCCGACAGCGGCAGTAACGGCGACGGCGACAGCAGC
GTTCCCGGAGCGGGCTTCAGCAGGAACGGTGGTGATGGTGACGGCGGTGA
CGGCGGCATTGCTGCAACACGGCCACGGTCGGGGAGCTTTGACGCTGCTG
CAGGTGCCCCATTGTCATGGCCCCTTGATGGGGAACCGTCAGGCGCGTCT
GCTTTTGGTGACGCGGGCGAGCTCTGCAATGGCGACGTTCAACCGCTTAA
GCCGCTAGAGCAGCAACCGCCGCCGCTGCCGCCGTCCCCGCCACCGCTGC
CGCCGCCGCCGCCGGCCGCGGCGGCACTTGCGGAACCGCCGTCATCCGGC
TCGCCTCTTGAGCGCCGTTCGCCGGGAACGCTGAGCTCCGGCGTGTATAA
GGCTGCGACGAACGTGACCTGGATGGCGGGCCTCGGTGATGAGGAATTCG
TCGGCGCTTTCAGCGGGTCCGGCGGGAGCTACGGTGGCATCGATCCCAAC
GAGCACTCGGAGGATGATGATGTCGTGAACGATGCGGACGGCAATGAAAA
TGACATCGAAAAGCTTTTGATGTCCGACGACGATGAGGAGAACACGTATC
CTGCGCCGCCAGTTGCCGGCAGCGGCGTCGACGCGGGCGGCGCCATGGGC
TCCAATGCCACTGTTACAGTCACCGCTGCTGCCGCCGCTTTGGTTGCGGC
TCCCGCCGACCCGACTGCTGCTGCGGCCGGCTCGGCTGCCGTTGCCGCTG
CGCCGGCCGCTACGTCCATCTCCCCCGTCGTTGCCTCTCCCACGCTCGCT
GCCTCCGCCGTCACGACCGCCATCAATGACGGCGCTGATGGCGGCATGGA
TGTCGACGTCTGGGACAGTAGTGACGCGCGTGACATCCATGAGACGGGAA
GTGATCCAGCCGCACTTTCGAACGCCACCGTTGTGGGCGTGGCGGCTGGT
GGGGGGACTGCGTCAGGCGCCGCGACAGCCGACGAAAGAACTTTTGGCGG
CAGCGGCGATAGCTGCGGATCTGGTGGCAGCAGTAGCGATGTCGGTGGCG
GCAATTCTGGCGGCGGTGGCAACATCGGGGGCGGCGTCAGCCGCAGCGCT
GATGGAGGCAGAGATGCTCTCAAAGGCGGCGACGATGGTGGAAGCGGCGA
TGGCATTAGGGACAACGGCGGCTGCAGCGGTGCTGGCGGCGACCTCAGCG
GCGGCGCTGGCGGCGACCTCTGTGTCGGCGCGGGCGGTGACCTCAACAGC
GGCGGCAACGACCCCGCCGAAGTGGACCGCGATGATAATGCCGATGCCGA
CGACAGTGGCGGAGCTGATGACGACATCATTGACGTTGAGCGGTACGTCG
TCCGGGCCGGCGAGCCGCAGCCGAAGAACTACATCGTCGGCAGGTTTTCC
AGGGGCTTGGTGAAGGCGCCCAACGACATGTGGCGCATCACGCTTTTGGC
AGGAAACATAAAGGTGTGGTACCGGCCGGTGGCGAATGCTTCAGTCTCTG
CCCATTTTGAATCGATACTGTCTTTGTCTATGTGTTCTTCGCATCGGCAG
GCACCCTGCCTTTGGCACGGCAGTTTTACGATTCCGTGCACAGAGTTTCT
GTTTGTGACTGCGAAGCCCGACCTGTCCCGCTGTCGTTGCCCTCTGCTTC
TCCCACGCAGGTGGGCATGGCCGAGGGCGCTTTCTCTCGATGCGTCCTTT
CGGCCGCTGTTGACCTGGACTGAGTGAGATTTCCGAGTCACTGCACCGCG
CGCCAGCTGGCAGCGGCGCCAATCTGCCATCATGTGAGCAGGCATGAAGC
CAGGGTGTCGTTATGGTGGGTGGCATTCCGCTTCAACGGGAGCCATCGCT
CTCGCTCGGCTGCTGCTTCGCGCACCTCGTCGCTCGGCGGCCTGACCTGG
TCGTATTAGGCTACGTTGTGCGGTGGAGAGTGGCAGCGGCTGAATCGATC
ACAAGCCATTTGTGGCTGATTCAAAGATGACGACGATAGTGCGAGGGAAA
AAGTCCAGAAAAGTACTATTTCGCGGTCTAATGATTAAATACTGGCGCAT
CTAAGGTAGAAGAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6180:2..3515-

>mRNA_P-wetherbeei_contig6180.1.1 ID=mRNA_P-wetherbeei_contig6180.1.1|Name=mRNA_P-wetherbeei_contig6180.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=2220bp|location=Sequence derived from alignment at P-wetherbeei_contig6180:2..3515- (Phaeothamnion wetherbeei SAG_119_79)
ATGACCTCTGGCGAAGACAGGGAGCTAGAAGGATTCATGCACAGCATCCT
CCGCGAATGTGCTGCGCGATTAAGCGGCGTGCAGCCAGAATATTCGGGGA
CGACTGGGCTGCGAGACCAACTGGAGCTCTTAGCACAGATATGGCGCCAG
AAATACGTTCAAAAGGTTACGGGCGGATTTGCTGGCGTCGGACGCGTCCA
TCGTCGAAGGGAAGAGGTATTTAAGAAGGAGGACCACGAGAAAGGAGAAG
GAAAAGTTACGCTGGGGGATGGAGTCGTTCCTCCGACTCATCGAGTCGTC
TTCAGTCCTTACCCGAAGCCGCTTTGGAACCCAGCAAACCGGAAGCCAGC
AGCTTTCATGGCGCCACCAAGACGGCCGAAGAGCGCCGCGTCGTCGCTGC
CCTCTGTGGGGGCCCAGCGGAACAGCAAGCGTCCTGTGGTCCAGGTCAAG
TCCGTCGGCGGGGGTCCCTCAGCGATGGCTGAGCGGGCTCCCAAGCGCCC
GCGGGACGAGTTGGGCGCCGGCAGTGATCGGGGCGTCAGCAACGGCGGAG
CCACATCGTTTGCCTCGGGCGGCGCAGGGGTTGTCTCCACTGCTGGCGGC
AATGCCGGTGGTGGTATTGGCAACGGCGGGACTTGCAACGGCGGGACTTG
CAACGGCAAGCCCGGCAACGGCGGCGACAGTAGCAGCCGCAATGGCGTCG
CCAACAACCCCGACAGCGGCAGTAACGGCGACGGCGACAGCAGCGTTCCC
GGAGCGGGCTTCAGCAGGAACGGTGGTGATGGTGACGGCGGTGACGGCGG
CATTGCTGCAACACGGCCACGGTCGGGGAGCTTTGACGCTGCTGCAGGTG
CCCCATTGTCATGGCCCCTTGATGGGGAACCGTCAGGCGCGTCTGCTTTT
GGTGACGCGGGCGAGCTCTGCAATGGCGACGTTCAACCGCTTAAGCCGCT
AGAGCAGCAACCGCCGCCGCTGCCGCCGTCCCCGCCACCGCTGCCGCCGC
CGCCGCCGGCCGCGGCGGCACTTGCGGAACCGCCGTCATCCGGCTCGCCT
CTTGAGCGCCGTTCGCCGGGAACGCTGAGCTCCGGCGTGTATAAGGCTGC
GACGAACGTGACCTGGATGGCGGGCCTCGGTGATGAGGAATTCGTCGGCG
CTTTCAGCGGGTCCGGCGGGAGCTACGGTGGCATCGATCCCAACGAGCAC
TCGGAGGATGATGATGTCGTGAACGATGCGGACGGCAATGAAAATGACAT
CGAAAAGCTTTTGATGTCCGACGACGATGAGGAGAACACGTATCCTGCGC
CGCCAGTTGCCGGCAGCGGCGTCGACGCGGGCGGCGCCATGGGCTCCAAT
GCCACTGTTACAGTCACCGCTGCTGCCGCCGCTTTGGTTGCGGCTCCCGC
CGACCCGACTGCTGCTGCGGCCGGCTCGGCTGCCGTTGCCGCTGCGCCGG
CCGCTACGTCCATCTCCCCCGTCGTTGCCTCTCCCACGCTCGCTGCCTCC
GCCGTCACGACCGCCATCAATGACGGCGCTGATGGCGGCATGGATGTCGA
CGTCTGGGACAGTAGTGACGCGCGTGACATCCATGAGACGGGAAGTGATC
CAGCCGCACTTTCGAACGCCACCGTTGTGGGCGTGGCGGCTGGTGGGGGG
ACTGCGTCAGGCGCCGCGACAGCCGACGAAAGAACTTTTGGCGGCAGCGG
CGATAGCTGCGGATCTGGTGGCAGCAGTAGCGATGTCGGTGGCGGCAATT
CTGGCGGCGGTGGCAACATCGGGGGCGGCGTCAGCCGCAGCGCTGATGGA
GGCAGAGATGCTCTCAAAGGCGGCGACGATGGTGGAAGCGGCGATGGCAT
TAGGGACAACGGCGGCTGCAGCGGTGCTGGCGGCGACCTCAGCGGCGGCG
CTGGCGGCGACCTCTGTGTCGGCGCGGGCGGTGACCTCAACAGCGGCGGC
AACGACCCCGCCGAAGTGGACCGCGATGATAATGCCGATGCCGACGACAG
TGGCGGAGCTGATGACGACATCATTGACGTTGAGCGGTACGTCGTCCGGG
CCGGCGAGCCGCAGCCGAAGAACTACATCGTCGGCAGGTTTTCCAGGGGC
TTGGTGAAGGCGCCCAACGACATGTGGCGCATCACGCTTTTGGCAGGAAA
CATAAAGGTGGGCATGGCCGAGGGCGCTTTCTCTCGATGCGTCCTTTCGG
CCGCTGTTGACCTGGACTGA
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