mRNA_P-wetherbeei_contig6172.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
|
Overview
Homology
BLAST of mRNA_P-wetherbeei_contig6172.1.1 vs. uniprot
Match: D7FMI5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMI5_ECTSI) HSP 1 Score: 136 bits (343), Expect = 1.230e-33 Identity = 73/177 (41.24%), Postives = 106/177 (59.89%), Query Frame = 1
Query: 175 MSGTPAWLRPEPQAAER-------VGLSPVESQQHSYGG---PPSPGGPWRLGFRICSITIAVLMIIASFVALGNLSVSDGFTTFFLCIYIWLFSGILMTYEMQGFVRCEGVDSSLRKYFGLVYGTLGRGIFMIFIAFLNFALENTNGWGVAVGILTLIEAAAMITVFLQRPHLLDD 675
M+ P+W++ + E +G SYG + R GFR+ S+ + ++MIIA+F L NLS FTTFF+ +Y LF+G+L+ +E QG + C+GVD ++R+YFGLVYG +GR +F+IFIAFLNFAL + + G+L L+ AMI VF + PHLLD+
Sbjct: 1 MASGPSWMQRDQLQGEGLTATDGGIGADGTNEPNASYGAIKAEMTDTNAVRFGFRVASLALGLMMIIAAFTELWNLS---SFTTFFIALYNLLFAGVLILHESQGLIMCDGVDYTMRRYFGLVYGHMGRALFIIFIAFLNFALTDAGWFATFTGLLLLLHGGAMIVVFTKYPHLLDE 174
BLAST of mRNA_P-wetherbeei_contig6172.1.1 vs. uniprot
Match: A0A7S2SJU5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SJU5_9STRA) HSP 1 Score: 88.6 bits (218), Expect = 1.220e-16 Identity = 54/169 (31.95%), Postives = 84/169 (49.70%), Query Frame = 1
Query: 187 PAWLRPEPQAAERVGLSPVESQQHSYGGPPSPGGPWRLGFRICSITIAVLMIIASFVALGNLSVSDGFTT-FFLCIYIWLFSGILMTYEMQGFVRCEGVDSSLRKYFGLVYGTLGRGIFMIFIAFLNFALENTNGWGVAVGILTLIEAAAMITVFLQRPHLLDDTLAPA 690
PAW+ P A + +P S S + R R+ + + V+M A ++L NL S+ T + Y+ LF+ +L +E+ R E V+S LRK FG ++ LG+G FM+FIAFLNF L ++ G+A GI I + ++L+ P D P+
Sbjct: 10 PAWMNTPPAAPPQSAYAPPPSNYGSMESSSNARLYVRAAIRLVVVGMCVMMSAAGALSLANLDNSNSVVTDVIVSCYVMLFASVLFLHEVNEMRRIELVESILRKNFGFLFKPLGKGCFMVFIAFLNFGLTDSGELGLATGICLCIVGFGYVGLYLRNPEYFDTPKEPS 178
BLAST of mRNA_P-wetherbeei_contig6172.1.1 vs. uniprot
Match: A0A7S3NGQ3_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NGQ3_9STRA) HSP 1 Score: 67.4 bits (163), Expect = 2.140e-9 Identity = 40/124 (32.26%), Postives = 69/124 (55.65%), Query Frame = 1
Query: 301 GFRICSITIAVLMI---IASFVALGNLSVSDGFTTFFLCIYIWLFSGILMTYEMQGFVRCEGVDSSLRKYFGLVYGTLGRGIFMIFIAFLNFALENTNGWGVAVGILTLIEAAAMITVFLQRPH 663
GFRI +A +M I S G ++ + + F + Y+ LF+ + +E + + L++ FG ++ LG+ IF+IF+AFLNF ++ + G+A GIL LI+ A ++ +FL+ PH
Sbjct: 50 GFRIVHFGLATMMAATGILSLTEFGRVN-RNQLSAFVISFYLILFAVVWFAFETMFIMPIDYFIFHLKRNFGFLFHPLGKAIFIIFVAFLNFGVQEES-LGLATGILCLIDGALLVLLFLKYPH 171
BLAST of mRNA_P-wetherbeei_contig6172.1.1 vs. uniprot
Match: A0A4D9DAG1_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DAG1_9STRA) HSP 1 Score: 67.0 bits (162), Expect = 4.280e-9 Identity = 51/169 (30.18%), Postives = 83/169 (49.11%), Query Frame = 1
Query: 187 PAWLRPEPQAAERVGLSPVE--------SQQHSYGGPPSPGGPWRLGFRICSITIAVLMIIASFVALGNLSVSD-GFTTFFLCIYIWLFSGILMTYEMQGFVRCEGVDSSLRKYFGLVYGTLGRGIFMIFIAFLNFALENTNGWGVAVGILTLIEAAAMITVFLQRPHL 666
P+WL E Q A SP E SQ H+ PS R ++ +A LM ++ G L ++ TFF+ +Y+++ + IL +E+ F +D+ R+ FG +YG+ G+ +++IFIAFLNF L +T A GI+ ++ M+ + P L
Sbjct: 8 PSWLDNEQQPAVVRSSSPPEGSSQATAASQLHAESILPSCAKYVVPLSRFVNMGLACLMAFSA--VNGILKIAQLQLDTFFVALYMFISAAILFFFELCQFKYVAFIDNVFRRNFGFMYGSRGKALYIIFIAFLNFGLVSTGILQFATGIVLAVDGGLMLFATFKYPTL 174
BLAST of mRNA_P-wetherbeei_contig6172.1.1 vs. uniprot
Match: A0A7S0GII7_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GII7_9STRA) HSP 1 Score: 64.7 bits (156), Expect = 3.320e-8 Identity = 54/195 (27.69%), Postives = 89/195 (45.64%), Query Frame = 1
Query: 172 TMS--GTPAWLRPEPQAAERVGLSPVESQQHSYGGPPSPGGPWRLGFRICSITI----AVLMIIASFVALG-----NLSVSDGFTTFFLCIYIWLFSGILMTYEMQGFVRCEGVDSSLRKYFGLVYGTLGRGIFMIFIAFLNFALENTNG----------WGVAVGILTLIEAAAMITVFLQRPHLLDDTLAPAA 693
TMS G P W P +A V + + P G + +I S+ + +++M++A F + +S SD F + IY+ +F+ +L+ YE+ + V+ SLRK FG +YG G+ +F+IF+AFL F LE G+ GI +T++ +P LL+ A +A
Sbjct: 8 TMSAFGEPDWTTPGVSSAAAVPTGATSKARLNSNSPSKCCGAGCVQ-KILSLFVVGIGSMMMVLAIFGLISFKWEKAVSYSDAFVS----IYMIIFATLLLAYELTWWASTAFVNKSLRKNFGFLYGIRGKSLFIIFVAFLTFGLEQQTNEVIYGVSLKMLGLGTGISFFAVGVLHLTLYFLKPDLLESYKASSA 197
BLAST of mRNA_P-wetherbeei_contig6172.1.1 vs. uniprot
Match: D8LM03_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LM03_ECTSI) HSP 1 Score: 62.8 bits (151), Expect = 7.330e-8 Identity = 49/164 (29.88%), Postives = 79/164 (48.17%), Query Frame = 1
Query: 187 PAWLRPEPQAAERVGLSPVESQ-QHSYGGPPSPGGPWRLGFRICSITIAVLMIIASFVALGNLSVSDGFTTFFLCIYIWLFSGILMTYEMQGFVR----CEGVDSSLRKYFGLVYGTLGRGIFMIFIAFLNFALENTNGWGVAVGILTLIEAAAMITVFLQRPH 663
P+W++ QAA G S + Q + G R F +I +AV+M A+ A G + + F L +Y+ +F+ +L YE FVR CE + K FG +G GRG++++F+ FLNF L+ T + G++TL + ++ RP
Sbjct: 4 PSWMQNTGQAAAPPGTSSGGAPAQQNAGSRSGDATVVRSVFHFVNIGVAVMM--AASAAFGLIDFRN-FENVVLSVYLMIFAVLLFMYE---FVRVMGNCERPKQIMTKNFGFFFGAKGRGLYLVFVGFLNFPLDLTLSFWT--GVVTLGWGVLTVLAYMTRPE 159
BLAST of mRNA_P-wetherbeei_contig6172.1.1 vs. uniprot
Match: A0A7S2W1J8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2W1J8_9STRA) HSP 1 Score: 60.8 bits (146), Expect = 4.720e-7 Identity = 36/130 (27.69%), Postives = 69/130 (53.08%), Query Frame = 1
Query: 310 ICSITIAVLMIIASFVALGNLSVSDGFTTFFLCIYIWLFSGILMTYEMQGFVRCEGVDSSLRKYFGLVYGTLGRGIFMIFIAFLNFALENTNGWGVAVGILTLIEAAAMITVFLQ--RPHLLDDTLAPAA 693
+C + VL ++S + ++ S+ F +C Y+ +FS +L TYE+ ++ ++ +RK FG +YG G+G+++IF+AFL L+N + + ++ +FL RP +++ AP A
Sbjct: 62 VCMCALGVLGFLSSLKSSSIVNASEVF----ICFYMVMFSLLLFTYELMWWISVPTINRIVRKNFGFMYGFKGKGLYLIFVAFLCVGLDNGGEEWLRYFTGVAFLSGGILHLFLVCFRPEIVETYQAPTA 187
BLAST of mRNA_P-wetherbeei_contig6172.1.1 vs. uniprot
Match: A0A482RNX0_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RNX0_9ARCH) HSP 1 Score: 57.4 bits (137), Expect = 3.440e-6 Identity = 30/121 (24.79%), Postives = 59/121 (48.76%), Query Frame = 1
Query: 304 FRICSITIAVLMIIASFVALGNLSVSDGFTTFFLCIYIWLFSGILMTYEMQGFVRCEGVDSSLRKYFGLVYGTLGRGIFMIFIAFLNFAL----ENTNGWGVAVGILTLIEAAAMITVFLQ 654
F + ++ V M + + N + F+ IY+ LF+ + +E+ +++ ++K FG +YGT+G+G+FM+F+ L F L + +A GIL +I ++L+
Sbjct: 5 FLVVNMGAMVFMAATGAIGIANTDSINDTGVIFVGIYMLLFASVQFVFEISQLCPSSSLNTVMKKNFGFLYGTIGKGLFMLFMGILAFGLNPSGKQAKSMAIACGILVSAWGVLLILIYLK 125
BLAST of mRNA_P-wetherbeei_contig6172.1.1 vs. uniprot
Match: A0A7S1GLT3_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GLT3_CYCTE) HSP 1 Score: 57.8 bits (138), Expect = 5.630e-6 Identity = 40/135 (29.63%), Postives = 66/135 (48.89%), Query Frame = 1
Query: 298 LGFRICSITIAVLMIIASFVALGNLSVSDGFTTFFLCIYIWLFSGILMTYEMQGFVRCEGVDSSLRKYFGLVYGTLGRGIFMIFIAFLNFALEN---TNGWGVAVGILTLIEAAAMITVFLQRPHLLDDTLAPAA 693
+G + ++ VL I+ SF +S+GF L Y+ +F+ +L YE+ + ++ SLRK FG +YG G+G+++IF+AFL L + A GI L + V +P + + AP A
Sbjct: 56 IGLSLLMASLGVLTIL-SFKTFAARDISEGF----LAGYMIIFALLLFAYEIMWWSAIPSINKSLRKNFGFLYGLRGKGLYLIFVAFLCLGLGSDPAVTAVTYATGIAFLTVGVLHLLVAFCQPEVSERYAAPTA 185 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6172.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig6172.1.1 >prot_P-wetherbeei_contig6172.1.1 ID=prot_P-wetherbeei_contig6172.1.1|Name=mRNA_P-wetherbeei_contig6172.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=239bp MSGTPAWLRPEPQAAERVGLSPVESQQHSYGGPPSPGGPWRLGFRICSITback to top mRNA from alignment at P-wetherbeei_contig6172:895..3349+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig6172.1.1 ID=mRNA_P-wetherbeei_contig6172.1.1|Name=mRNA_P-wetherbeei_contig6172.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2455bp|location=Sequence derived from alignment at P-wetherbeei_contig6172:895..3349+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig6172:895..3349+ >mRNA_P-wetherbeei_contig6172.1.1 ID=mRNA_P-wetherbeei_contig6172.1.1|Name=mRNA_P-wetherbeei_contig6172.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=717bp|location=Sequence derived from alignment at P-wetherbeei_contig6172:895..3349+ (Phaeothamnion wetherbeei SAG_119_79)back to top |