mRNA_P-wetherbeei_contig6168.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6168.1.1
Unique NamemRNA_P-wetherbeei_contig6168.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig6168.1.1 vs. uniprot
Match: A0A8J9SFT9_9CHLO (Uncharacterized protein n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9SFT9_9CHLO)

HSP 1 Score: 70.9 bits (172), Expect = 9.060e-13
Identity = 31/66 (46.97%), Postives = 45/66 (68.18%), Query Frame = 1 
Query:    1 YTWYTNFVVGWLGLYQSPELMQFAQHLYLWRDGMWKYRWGDQQFFPFAAGAFDNGTNIADFTWLRK 198
            Y + + FV GWLG+Y SPELM++A+    +   MW +RWGDQQF+  A G FD+G+ I D + L++
Sbjct:  357 YIYLSEFVGGWLGMYTSPELMEYARIWNYYPYSMWTWRWGDQQFWTKANGMFDDGSGILDLSHLKQ 422
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BLAST of mRNA_P-wetherbeei_contig6168.1.1 vs. uniprot
Match: I0YSN6_COCSC (Uncharacterized protein n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YSN6_COCSC)

HSP 1 Score: 70.9 bits (172), Expect = 9.060e-13
Identity = 30/66 (45.45%), Postives = 45/66 (68.18%), Query Frame = 1 
Query:    1 YTWYTNFVVGWLGLYQSPELMQFAQHLYLWRDGMWKYRWGDQQFFPFAAGAFDNGTNIADFTWLRK 198
            Y + + FV GWLG+Y SPELM++ +    +   MW +RWGDQQF+  A G FD+G+ I D ++L++
Sbjct:  357 YIYLSEFVGGWLGMYTSPELMEYGRIWNYYPYSMWTWRWGDQQFWTKANGMFDDGSGILDLSYLKQ 422
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BLAST of mRNA_P-wetherbeei_contig6168.1.1 vs. uniprot
Match: A0A8J9SFW5_9CHLO (Uncharacterized protein n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9SFW5_9CHLO)

HSP 1 Score: 67.4 bits (163), Expect = 1.520e-11
Identity = 29/66 (43.94%), Postives = 43/66 (65.15%), Query Frame = 1 
Query:    1 YTWYTNFVVGWLGLYQSPELMQFAQHLYLWRDGMWKYRWGDQQFFPFAAGAFDNGTNIADFTWLRK 198
            Y + + FV GWLG+Y SPEL+++ +    +   MW +RWGDQQF+  A G FD+G  I D + L++
Sbjct:  349 YIYLSEFVGGWLGMYTSPELIEYGRIWNYYPYAMWTWRWGDQQFWTKANGLFDDGAGILDLSHLKQ 414
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BLAST of mRNA_P-wetherbeei_contig6168.1.1 vs. uniprot
Match: A0A7S0J5M7_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0J5M7_9EUKA)

HSP 1 Score: 53.1 bits (126), Expect = 1.570e-6
Identity = 24/41 (58.54%), Postives = 29/41 (70.73%), Query Frame = 1 
Query:   10 YTNFVVGWLGLYQSPELMQFAQHLYLWRDGMWKYRWGDQQF 132
            Y NF+  WLGL+QSPEL+ FAQH + W  G W+ RW DQ F
Sbjct:  234 YGNFLGMWLGLFQSPELLLFAQHWWAWPGG-WQNRWTDQPF 273
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BLAST of mRNA_P-wetherbeei_contig6168.1.1 vs. uniprot
Match: A0A7S2G2E1_9DINO (Hypothetical protein n=1 Tax=Alexandrium andersonii TaxID=327968 RepID=A0A7S2G2E1_9DINO)

HSP 1 Score: 52.4 bits (124), Expect = 2.850e-6
Identity = 24/49 (48.98%), Postives = 32/49 (65.31%), Query Frame = 1 
Query:   10 YTNFVVGWLGLYQSPELMQFAQHLYLWRDGMWKYRWGDQQFFPFAAGAF 156
            Y+NFV G LG +QSPE+M  A     ++DGMW +RW DQQ++    G F
Sbjct:  204 YSNFVGGALGFWQSPEVMALASRYEKFKDGMWVHRWTDQQWWRNVLGFF 252
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BLAST of mRNA_P-wetherbeei_contig6168.1.1 vs. uniprot
Match: A0A7S2VP70_9DINO (Hypothetical protein n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2VP70_9DINO)

HSP 1 Score: 48.9 bits (115), Expect = 5.160e-5
Identity = 26/65 (40.00%), Postives = 36/65 (55.38%), Query Frame = 1 
Query:   10 YTNFVVGWLGLYQSPELMQFAQHLYLWRDGMWKYRWGDQQFFP------FAAGAFDN-GTNIADF 183
            Y  F  G +  +QSPE+++  +    + +GMWK+RWGDQQF+       F    FDN   NI DF
Sbjct:  476 YAEFTGGTMDFWQSPEMVRLGRSFEKFPNGMWKHRWGDQQFWIPAMAIFFTPEEFDNVAFNINDF 540
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6168.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A8J9SFT9_9CHLO9.060e-1346.97Uncharacterized protein n=1 Tax=Coccomyxa sp. Obi ... [more]
I0YSN6_COCSC9.060e-1345.45Uncharacterized protein n=1 Tax=Coccomyxa subellip... [more]
A0A8J9SFW5_9CHLO1.520e-1143.94Uncharacterized protein n=1 Tax=Coccomyxa sp. Obi ... [more]
A0A7S0J5M7_9EUKA1.570e-658.54Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
A0A7S2G2E1_9DINO2.850e-648.98Hypothetical protein n=1 Tax=Alexandrium andersoni... [more]
A0A7S2VP70_9DINO5.160e-540.00Hypothetical protein n=1 Tax=Brandtodinium nutricu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6168contigP-wetherbeei_contig6168:3118..3538 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size198
Hectar predicted targeting categoryother localisation
Exons2
Cds size198
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186893.6936233-CDS-P-wetherbeei_contig6168:3117..31971683186893.6936233-CDS-P-wetherbeei_contig6168:3117..3197Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6168 3118..3197 -
1683186893.705443-CDS-P-wetherbeei_contig6168:3420..35381683186893.705443-CDS-P-wetherbeei_contig6168:3420..3538Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6168 3421..3538 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6168.1.1prot_P-wetherbeei_contig6168.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6168 3118..3538 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6168.1.1

>prot_P-wetherbeei_contig6168.1.1 ID=prot_P-wetherbeei_contig6168.1.1|Name=mRNA_P-wetherbeei_contig6168.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=66bp
YTWYTNFVVGWLGLYQSPELMQFAQHLYLWRDGMWKYRWGDQQFFPFAAG
AFDNGTNIADFTWLRK
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mRNA from alignment at P-wetherbeei_contig6168:3118..3538-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6168.1.1 ID=mRNA_P-wetherbeei_contig6168.1.1|Name=mRNA_P-wetherbeei_contig6168.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=421bp|location=Sequence derived from alignment at P-wetherbeei_contig6168:3118..3538- (Phaeothamnion wetherbeei SAG_119_79)
TACACATGGTACACCAACTTCGTCGTGGGGTGGCTCGGGCTCTACCAATC
GCCGGAGCTCATGCAGTTTGCGCAGCACCTTTACCTGTGGCGGGACGGCA
TGTGGAAGTACCGCTGGGGTGAGCCAATCGTCATTTTGATCAACCGATTA
ATCTGCGTGTCACAGGCGGGCCAGTTTGGTGGTTCTCCTTTTGTCTGAGG
CGCTACTCGCGGCTTCGGCACCACCCAGATCGCCTTCTTTCAGTATACTT
CGGCCGGCGGTAGCTGGCAGCGTTAGTTGAGTCGGCAGCCTTAGTCAACG
TTTTACTGCCCATTGAACTTACCATTCCGCTCGCGAAACAGGAGACCAGC
AGTTCTTTCCTTTCGCTGCGGGCGCGTTCGACAATGGCACCAACATCGCT
GACTTTACGTGGCTGCGCAAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6168:3118..3538-

>mRNA_P-wetherbeei_contig6168.1.1 ID=mRNA_P-wetherbeei_contig6168.1.1|Name=mRNA_P-wetherbeei_contig6168.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=198bp|location=Sequence derived from alignment at P-wetherbeei_contig6168:3118..3538- (Phaeothamnion wetherbeei SAG_119_79)
TACACATGGTACACCAACTTCGTCGTGGGGTGGCTCGGGCTCTACCAATC
GCCGGAGCTCATGCAGTTTGCGCAGCACCTTTACCTGTGGCGGGACGGCA
TGTGGAAGTACCGCTGGGGAGACCAGCAGTTCTTTCCTTTCGCTGCGGGC
GCGTTCGACAATGGCACCAACATCGCTGACTTTACGTGGCTGCGCAAG
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