mRNA_P-wetherbeei_contig6162.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6162.3.1
Unique NamemRNA_P-wetherbeei_contig6162.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6162.3.1 vs. uniprot
Match: F0WMZ2_9STRA (COX assembly mitochondrial protein n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WMZ2_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 5.060e-21
Identity = 39/58 (67.24%), Postives = 46/58 (79.31%), Query Frame = 1
Query:    1 MHPPLDRPHPLCQKEIEEIIRCHQEHPYAKWWGRCNAAKSALDRCFYLEKEEKRKANL 174
            MHPPLDRPHPLCQ+ I+ + +CH E+P AK+ G CN AK ALD CF +EKEEKRK NL
Sbjct:    1 MHPPLDRPHPLCQQVIKNLKQCHTENPRAKFLGACNEAKRALDDCFRMEKEEKRKQNL 58          
BLAST of mRNA_P-wetherbeei_contig6162.3.1 vs. uniprot
Match: A0A835ZCC5_9STRA (COX assembly mitochondrial protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCC5_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 2.560e-20
Identity = 35/63 (55.56%), Postives = 50/63 (79.37%), Query Frame = 1
Query:    1 MHPPLDRPHPLCQKEIEEIIRCHQEHPYAKWWGRCNAAKSALDRCFYLEKEEKRKANLEHARA 189
            MHPPL +PHP+CQ+ +E++++CH E+PY K+ G CN AK+ALD+CF  EK  + KAN+E A+A
Sbjct:    1 MHPPLFKPHPMCQEMVEQLVKCHDENPYGKFLGACNEAKTALDKCFRQEKIARYKANMESAKA 63          
BLAST of mRNA_P-wetherbeei_contig6162.3.1 vs. uniprot
Match: A0A6H5L128_9PHAE (COX assembly mitochondrial protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L128_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 4.620e-20
Identity = 37/62 (59.68%), Postives = 47/62 (75.81%), Query Frame = 1
Query:    1 MHPPLDRPHPLCQKEIEEIIRCHQEHPYAKWWGRCNAAKSALDRCFYLEKEEKRKANLEHAR 186
            MHPPL RPHP C +E++ ++ CH+E+PY K++G CN  K ALD CF LEKEEKR+ NL  AR
Sbjct:    1 MHPPLLRPHPSCHEEVKMLMACHEENPYGKFFGACNDLKLALDSCFVLEKEEKRRKNLAKAR 62          
BLAST of mRNA_P-wetherbeei_contig6162.3.1 vs. uniprot
Match: A0A024FTV6_9STRA (COX assembly mitochondrial protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024FTV6_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 7.550e-20
Identity = 37/58 (63.79%), Postives = 44/58 (75.86%), Query Frame = 1
Query:    1 MHPPLDRPHPLCQKEIEEIIRCHQEHPYAKWWGRCNAAKSALDRCFYLEKEEKRKANL 174
            MHPPLDRPHPLCQK I+ + +CH ++P  K+ G CN AK ALD CF  EKEEKR+ NL
Sbjct:    1 MHPPLDRPHPLCQKVIQNLKKCHADNPRRKFIGACNEAKRALDECFRKEKEEKRRQNL 58          
BLAST of mRNA_P-wetherbeei_contig6162.3.1 vs. uniprot
Match: A0A0P1AB85_PLAHL (COX assembly mitochondrial protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AB85_PLAHL)

HSP 1 Score: 82.0 bits (201), Expect = 7.220e-19
Identity = 37/63 (58.73%), Postives = 46/63 (73.02%), Query Frame = 1
Query:    1 MHPPLDRPHPLCQKEIEEIIRCHQEHPYAKWWGRCNAAKSALDRCFYLEKEEKRKANLEHARA 189
            MH PLDRPHP CQ EI+ ++ CH ++PYAK++G CN  KSALD+CF  EK   R  NL HA+A
Sbjct:    1 MHAPLDRPHPDCQIEIKALLDCHNDNPYAKFFGACNDVKSALDQCFKKEKIRIRSENLRHAKA 63          
BLAST of mRNA_P-wetherbeei_contig6162.3.1 vs. uniprot
Match: K3WST6_GLOUD (COX assembly mitochondrial protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WST6_GLOUD)

HSP 1 Score: 80.1 bits (196), Expect = 4.280e-18
Identity = 41/75 (54.67%), Postives = 50/75 (66.67%), Query Frame = 1
Query:    1 MHPPLDRPHPLCQKEIEEIIRCHQEHPYAKWWGRCNAAKSALDRCFYLEKEEKRKANLEHARAKRARWEETLKER 225
            MH PLDRPHP CQ+ I  +  CH+E+P  K++G CN AK ALD+CF  EKE KR  NL  ARA  A   + +KER
Sbjct:    1 MHAPLDRPHPDCQEVIMALNLCHEENPRMKFFGACNEAKVALDKCFKKEKERKRDENLRRARASDAYVRQKMKER 75          
BLAST of mRNA_P-wetherbeei_contig6162.3.1 vs. uniprot
Match: A0A225VCF9_9STRA (COX assembly mitochondrial protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VCF9_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 4.390e-18
Identity = 38/75 (50.67%), Postives = 51/75 (68.00%), Query Frame = 1
Query:    1 MHPPLDRPHPLCQKEIEEIIRCHQEHPYAKWWGRCNAAKSALDRCFYLEKEEKRKANLEHARAKRARWEETLKER 225
            MH PLDRPHP CQ EI+ ++ CH E+PYAK++G C   K+ALD CF  EK   R  N +HA+A  A  ++ ++ER
Sbjct:    1 MHTPLDRPHPDCQTEIKALLECHDENPYAKFFGACGEIKTALDICFREEKNRIRSENFKHAKASDAYVKQKMQER 75          
BLAST of mRNA_P-wetherbeei_contig6162.3.1 vs. uniprot
Match: A0A6A3SY18_9STRA (COX assembly mitochondrial protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A3SY18_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 7.520e-18
Identity = 35/63 (55.56%), Postives = 44/63 (69.84%), Query Frame = 1
Query:    1 MHPPLDRPHPLCQKEIEEIIRCHQEHPYAKWWGRCNAAKSALDRCFYLEKEEKRKANLEHARA 189
            MH PLDRPHP CQ EI+ ++ CH E+PYAK++G C   K+ALD CF  EK   R  N +HA+A
Sbjct:    1 MHTPLDRPHPDCQAEIKALLECHDENPYAKFFGACGEVKTALDWCFRQEKTRIRSENFKHAKA 63          
BLAST of mRNA_P-wetherbeei_contig6162.3.1 vs. uniprot
Match: W2G7J4_PHYPR (COX assembly mitochondrial protein n=16 Tax=Phytophthora TaxID=4783 RepID=W2G7J4_PHYPR)

HSP 1 Score: 79.7 bits (195), Expect = 7.720e-18
Identity = 37/75 (49.33%), Postives = 50/75 (66.67%), Query Frame = 1
Query:    1 MHPPLDRPHPLCQKEIEEIIRCHQEHPYAKWWGRCNAAKSALDRCFYLEKEEKRKANLEHARAKRARWEETLKER 225
            MH PLDRPHP CQ EI+ ++ CH+ +PYAK++G C   K+ALD CF  EK   R  N +HA+A  A   + ++ER
Sbjct:    1 MHAPLDRPHPDCQAEIKALLECHENNPYAKFFGACGEVKTALDHCFKNEKIRMRSENFKHAKASDAYVRQKMQER 75          
BLAST of mRNA_P-wetherbeei_contig6162.3.1 vs. uniprot
Match: A0A3M6VJT8_9STRA (COX assembly mitochondrial protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VJT8_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 1.160e-17
Identity = 38/75 (50.67%), Postives = 53/75 (70.67%), Query Frame = 1
Query:    1 MHPPLDRPHPLCQKEIEEIIRCHQEHPYAKWWGRCNAAKSALDRCFYLEKEEKRKANLEHARAKRARWEETLKER 225
            MH PLDRPHP CQ EI+ +++CH  +PYAK++G C+  K+ALD CF  EKE  R  NL+ A+A  A  ++ ++ER
Sbjct:    1 MHTPLDRPHPDCQSEIKALLQCHDNNPYAKFFGACSDVKTALDWCFKHEKERIRAENLKRAKASDAFVKQKMQER 75          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6162.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
F0WMZ2_9STRA5.060e-2167.24COX assembly mitochondrial protein n=1 Tax=Albugo ... [more]
A0A835ZCC5_9STRA2.560e-2055.56COX assembly mitochondrial protein n=1 Tax=Tribone... [more]
A0A6H5L128_9PHAE4.620e-2059.68COX assembly mitochondrial protein n=1 Tax=Ectocar... [more]
A0A024FTV6_9STRA7.550e-2063.79COX assembly mitochondrial protein n=1 Tax=Albugo ... [more]
A0A0P1AB85_PLAHL7.220e-1958.73COX assembly mitochondrial protein n=1 Tax=Plasmop... [more]
K3WST6_GLOUD4.280e-1854.67COX assembly mitochondrial protein n=1 Tax=Globisp... [more]
A0A225VCF9_9STRA4.390e-1850.67COX assembly mitochondrial protein n=1 Tax=Phytoph... [more]
A0A6A3SY18_9STRA7.520e-1855.56COX assembly mitochondrial protein n=2 Tax=Phytoph... [more]
W2G7J4_PHYPR7.720e-1849.33COX assembly mitochondrial protein n=16 Tax=Phytop... [more]
A0A3M6VJT8_9STRA1.160e-1750.67COX assembly mitochondrial protein n=1 Tax=Peronos... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6162contigP-wetherbeei_contig6162:2656..3019 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog42099.EPrPV00000021554
PFAMsCmc1
Model size225
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryother localisation
Exons2
Evalue5.72e-20
EggNOG OGs2CZWX@1|root,2SBZE@2759|Eukaryota,1MI5Q@121069|Pythiales
DescriptionCNPV141 HAL3-like domain protein (ISS). Source PGD
Cds size225
COG categoryO
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186893.3044338-CDS-P-wetherbeei_contig6162:2655..28381683186893.3044338-CDS-P-wetherbeei_contig6162:2655..2838Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6162 2656..2838 -
1683186893.3164454-CDS-P-wetherbeei_contig6162:2977..30191683186893.3164454-CDS-P-wetherbeei_contig6162:2977..3019Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6162 2978..3019 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6162.3.1prot_P-wetherbeei_contig6162.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6162 2656..3019 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6162.3.1

>prot_P-wetherbeei_contig6162.3.1 ID=prot_P-wetherbeei_contig6162.3.1|Name=mRNA_P-wetherbeei_contig6162.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=75bp
MHPPLDRPHPLCQKEIEEIIRCHQEHPYAKWWGRCNAAKSALDRCFYLEK
EEKRKANLEHARAKRARWEETLKER
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mRNA from alignment at P-wetherbeei_contig6162:2656..3019-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6162.3.1 ID=mRNA_P-wetherbeei_contig6162.3.1|Name=mRNA_P-wetherbeei_contig6162.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=364bp|location=Sequence derived from alignment at P-wetherbeei_contig6162:2656..3019- (Phaeothamnion wetherbeei SAG_119_79)
ATGCATCCGCCCTTGGATCGGCCGCATCCTCTCTGCCAGAAGGTACGCCC ATTTTTTCCATCTTCTCCCTCTTGTCAAATTCTTCTCGCCTCTGGTGCCC CTTGTTCTAAAAGACGCTTGCCTTAGGCCATTTGAGCACCCAAATGTTCA TTATTTCCTACATTTTCGTCCCCCCTCACAGGAGATTGAAGAGATCATTC GCTGCCACCAGGAGCACCCATACGCCAAGTGGTGGGGGCGGTGCAACGCG GCCAAGAGCGCGCTCGACCGCTGCTTCTACCTCGAAAAGGAGGAGAAGCG GAAGGCGAACCTGGAGCACGCCCGGGCGAAGCGCGCGCGGTGGGAGGAGA CGTTGAAGGAGCGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6162:2656..3019-

>mRNA_P-wetherbeei_contig6162.3.1 ID=mRNA_P-wetherbeei_contig6162.3.1|Name=mRNA_P-wetherbeei_contig6162.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=225bp|location=Sequence derived from alignment at P-wetherbeei_contig6162:2656..3019- (Phaeothamnion wetherbeei SAG_119_79)
ATGCATCCGCCCTTGGATCGGCCGCATCCTCTCTGCCAGAAGGAGATTGA
AGAGATCATTCGCTGCCACCAGGAGCACCCATACGCCAAGTGGTGGGGGC
GGTGCAACGCGGCCAAGAGCGCGCTCGACCGCTGCTTCTACCTCGAAAAG
GAGGAGAAGCGGAAGGCGAACCTGGAGCACGCCCGGGCGAAGCGCGCGCG
GTGGGAGGAGACGTTGAAGGAGCGC
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