mRNA_P-wetherbeei_contig6154.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6154.3.1
Unique NamemRNA_P-wetherbeei_contig6154.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig6154.3.1 vs. uniprot
Match: A0A835YI97_9STRA (PRELI/MSF1 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YI97_9STRA)

HSP 1 Score: 109 bits (272), Expect = 2.210e-27
Identity = 50/113 (44.25%), Postives = 70/113 (61.95%), Query Frame = 1 
Query:    4 YPFPWPVVADFVLSEKAKGPPDDNVRLQMDETRYFYHVRMPWYARLVLGKEVIWVDDIIKNKQRQVLLEIGQNFSNTDKGTITDLSEWFADPRDPANATLYTKIIEIHITYGW 342
            YPFPW  VADFVLSEK KGPPDD ++L  +   + Y + MPWYARL+LG  V+W D I  +  ++ + E G+N +    G +TD S W A   +P   TLY+K ++ ++   W
Sbjct:   68 YPFPWERVADFVLSEKTKGPPDDQIKLITEGLTFHYSIPMPWYARLLLGPVVLWDDVITVDYVKREMTERGRNTNLLSHGLVTDTSHWVASKENPQE-TLYSKTVDFNVKATW 179
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BLAST of mRNA_P-wetherbeei_contig6154.3.1 vs. uniprot
Match: D8LBI5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBI5_ECTSI)

HSP 1 Score: 110 bits (275), Expect = 3.230e-27
Identity = 55/110 (50.00%), Postives = 68/110 (61.82%), Query Frame = 1 
Query:    1 RYPFPWPVVADFVLSEKAKGPPDDNVRLQMDETRYFYHVRMPWYARLVLGKEVIWVDDIIKNKQRQVLLEIGQNFSNTDKGTITDLSEWFADPRDPANATLYTKIIEIHI 330
            RYPFPW   A FVL  KAKGPPD+ V L++D   + Y+V MPWYARLVLGK +IW D +  N   + L E G N S    GT+ D S W A   DP N T+Y+K ++  I
Sbjct:   21 RYPFPWETTAAFVLRVKAKGPPDEMVTLEVDRNVFKYNVHMPWYARLVLGKNIIWHDVLHANPTTKTLSEDGINMSLQRLGTVRDCSSWRACEDDP-NVTMYSKRVDFDI 129
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6154.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835YI97_9STRA2.210e-2744.25PRELI/MSF1 domain-containing protein n=1 Tax=Tribo... [more]
D8LBI5_ECTSI3.230e-2750.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6154contigP-wetherbeei_contig6154:2325..3350 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size345
Hectar predicted targeting categoryother localisation
Exons3
Cds size345
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186892.8496633-CDS-P-wetherbeei_contig6154:2324..24251683186892.8496633-CDS-P-wetherbeei_contig6154:2324..2425Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6154 2325..2425 +
1683186892.8619823-CDS-P-wetherbeei_contig6154:2592..26891683186892.8619823-CDS-P-wetherbeei_contig6154:2592..2689Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6154 2593..2689 +
1683186892.8703597-CDS-P-wetherbeei_contig6154:3203..33501683186892.8703597-CDS-P-wetherbeei_contig6154:3203..3350Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6154 3204..3350 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6154.3.1prot_P-wetherbeei_contig6154.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6154 2325..3350 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6154.3.1

>prot_P-wetherbeei_contig6154.3.1 ID=prot_P-wetherbeei_contig6154.3.1|Name=mRNA_P-wetherbeei_contig6154.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=115bp
RYPFPWPVVADFVLSEKAKGPPDDNVRLQMDETRYFYHVRMPWYARLVLG
KEVIWVDDIIKNKQRQVLLEIGQNFSNTDKGTITDLSEWFADPRDPANAT
LYTKIIEIHITYGW*
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mRNA from alignment at P-wetherbeei_contig6154:2325..3350+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6154.3.1 ID=mRNA_P-wetherbeei_contig6154.3.1|Name=mRNA_P-wetherbeei_contig6154.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1026bp|location=Sequence derived from alignment at P-wetherbeei_contig6154:2325..3350+ (Phaeothamnion wetherbeei SAG_119_79)
AGATACCCATTCCCGTGGCCCGTGGTTGCCGACTTCGTGCTGTCCGAGAA
GGCAAAAGGACCGCCTGACGATAATGTAAGGCTTCAGATGGACGAGACGA
GGTGAGGCACGGTTGCTCGATCCTCCTGAGAAAACGCGTGAATGTAGTAA
GTTTGTGTAGCGAACCCCTTGCCCCAACCCCGGTAATGGCCGTTTGCTAG
CCGGCCATTTGCTAGCTGAAGTCACAAACTACTCGTTGGCGGTCTGTATA
TCACGTTTTGCATCGCAGGTATTTCTACCACGTGCGAATGCCGTGGTACG
CCCGGCTGGTGCTCGGAAAGGAGGTGATTTGGGTGGACGACATCATTAAG
AACAAGCAGAGACAGGTGAGCCGCCCGCGCCGTTCGATCTGCTGCCGCAA
TCACCCGTTTCGTATTGGGTCGGGAATGTCTTCAACAGCGACTCCGAAGG
CTCGAGACGGGTTTGCCCTTCAATAGCGCGCAAGTTGAGCAAGAGAACCA
TGGAGTGCGTCGAACGCAAGCGCTAATAATAGCAAAGAATGACGGTTTCC
GCGCCTCTTTATCGGAAGTGGCATCGCAGAGCATGCAACTCGATCCTGTT
ATGTCAAATTCACTGGTTTTTTCCCCCCTTCGGAAGCATGTTTTTGAGCG
ACCATTTGCGACCCGGCTAGCTATGCGCTCACGTTATCCCTTTTTTTGGG
TGCAACGCTGCTCGTGGCTGTCGGTTTTTTCCTCGCTGGGGTTAGGTTGG
CACTTTCCTTTCTTCCTTGCCCTTCCTCCCAGTCAATCCGACCCACTGGT
CCGTCCTGGTTTAACTCATCCTAATTCATTCTTAGGGTTTTACGCGCTGC
CATAACGTTGCCGTTGCCATTGCCATCAGGTGCTGCTGGAGATTGGGCAG
AATTTCAGCAACACTGACAAGGGCACCATCACTGACCTCTCCGAGTGGTT
CGCCGACCCGCGCGACCCCGCCAACGCCACGCTTTACACGAAAATCATCG
AGATCCACATAACCTACGGATGGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6154:2325..3350+

>mRNA_P-wetherbeei_contig6154.3.1 ID=mRNA_P-wetherbeei_contig6154.3.1|Name=mRNA_P-wetherbeei_contig6154.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=345bp|location=Sequence derived from alignment at P-wetherbeei_contig6154:2325..3350+ (Phaeothamnion wetherbeei SAG_119_79)
AGATACCCATTCCCGTGGCCCGTGGTTGCCGACTTCGTGCTGTCCGAGAA
GGCAAAAGGACCGCCTGACGATAATGTAAGGCTTCAGATGGACGAGACGA
GGTATTTCTACCACGTGCGAATGCCGTGGTACGCCCGGCTGGTGCTCGGA
AAGGAGGTGATTTGGGTGGACGACATCATTAAGAACAAGCAGAGACAGGT
GCTGCTGGAGATTGGGCAGAATTTCAGCAACACTGACAAGGGCACCATCA
CTGACCTCTCCGAGTGGTTCGCCGACCCGCGCGACCCCGCCAACGCCACG
CTTTACACGAAAATCATCGAGATCCACATAACCTACGGATGGTGA
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