mRNA_P-wetherbeei_contig615.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig615.2.1
Unique NamemRNA_P-wetherbeei_contig615.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig615.2.1 vs. uniprot
Match: A0A835ZC16_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC16_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 1.900e-21
Identity = 58/170 (34.12%), Postives = 90/170 (52.94%), Query Frame = 1 
Query:  148 ELRFLFRLVDHNGSGTVERGELVELLKKMGTETDAGEIDTWLGSSDNDGDGVLSFEEFCQALTITKGERGKYTKDQMTSACRAFEGTRPVGK--------------------------LHRGVLFQALSEYGMQEGADFVTAEEAAALAAGMEADEK-GMVDYVKIVDSL 576
            EL+FLF + D +G G++E+ EL+++L+++G      EI+ WLG +D D DGV+SF EFC A+     +   YTK  M  A + FE     GK                          +H+GVL QAL+EYG+ E    +  EEA  LA  +   +K G++DY  +++++
Sbjct:   19 ELKFLFDMADTDGGGSIEKDELMDMLRRLGIIVSETEIEYWLGDNDQDSDGVISFPEFCYAMQRKVVDAAHYTKQDMLDAFKMFEHPDYRGKGLCSILGWYRPRDPAAWRLCARFGVQVHKGVLVQALTEYGLGER---MAKEEAVQLADCLSHGQKDGLIDYRALIENI 185
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BLAST of mRNA_P-wetherbeei_contig615.2.1 vs. uniprot
Match: A0A7S0SMS1_9CHLO (Hypothetical protein n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0SMS1_9CHLO)

HSP 1 Score: 73.2 bits (178), Expect = 1.100e-12
Identity = 48/143 (33.57%), Postives = 79/143 (55.24%), Query Frame = 1 
Query:  148 ELRFLFRLVDHNGSGTVERGELVELLKKMGTETDAGEIDTWLGSSDNDGDGVLSFEEFCQALTITKGERGKYTKDQMTSACRAFEGTR-PVGKLHRGVLFQALSEYGMQEGADFVTAEEAAALAAGMEADEKGMVDYVKIVDS 573
            E R +F+LVD +GSG ++ GE+ EL++ +G     GEI+  +   D DG+GV+ FEEF   + +   ++G Y K  +    R F   + P G +    L  AL ++      D +T + AA+L A +E D  G ++Y++ V+S
Sbjct:   48 EFREVFKLVDKDGSGEIDAGEVRELMRMLGMTPTVGEIEALVKEIDLDGNGVVDFEEFLLVM-VGGRQKGGYDKKSLLRGFRVFADKKMPNGFITPETLEAALVDHCR----DGLTLDAAASLVAQLERDTNGNINYLEKVNS 185
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BLAST of mRNA_P-wetherbeei_contig615.2.1 vs. uniprot
Match: A0A5J4VYI4_9EUKA (Putative calcium binding protein n=3 Tax=Streblomastix strix TaxID=222440 RepID=A0A5J4VYI4_9EUKA)

HSP 1 Score: 63.9 bits (154), Expect = 1.660e-9
Identity = 40/116 (34.48%), Postives = 61/116 (52.59%), Query Frame = 1 
Query:  115 SSKVNDDPLNLELRFLFRLVDHNGSGTVERGELVELLKKMGTETDAGEIDTWLGSSDNDGDGVLSFEEFCQALTITKGERGKYTKDQMTSACRAFEGTRPVGKLHRGVLFQALSEY 462
            SS+   +  + EL  LF +VD +  GT++R EL+ELLKK+G E D  EID  + S D+DG G +   EF         ++  Y   ++  A + F    P G +   +L + L+EY
Sbjct:    2 SSQKRQELTDQELLELFNIVDLDHGGTIDREELIELLKKLGFEDDKEEIDAIVASVDSDGSGDIDPYEFINGFQ----KKLVYNPKKLKRAFQFFAKGSPKGLIRTDLLIRVLNEY 113
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BLAST of mRNA_P-wetherbeei_contig615.2.1 vs. uniprot
Match: UPI0001EFB622 (calcium-binding protein p22 n=1 Tax=Trichinella spiralis TaxID=6334 RepID=UPI0001EFB622)

HSP 1 Score: 57.0 bits (136), Expect = 1.640e-6
Identity = 35/92 (38.04%), Postives = 50/92 (54.35%), Query Frame = 1 
Query:  103 RLPPSSKVNDDPLNL---ELRFLFRLVDHNGSGTVERGELVELLKKM-GTETDAGEIDT----WLGSSDNDGDGVLSFEEFCQALTITKGER 354
            R  P  K    PLN    +LRF F + D N  G + + EL+E+L  M G    A ++D      +  +D DGDG++SFEEFC+A+  T  E+
Sbjct:  124 RFRPIKKNKPHPLNRRRDKLRFAFSMYDLNHDGFITKNELLEILNMMVGAHISADQLDRIATRTITEADKDGDGMISFEEFCEAMEKTNIEQ 215
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BLAST of mRNA_P-wetherbeei_contig615.2.1 vs. uniprot
Match: A0A6A3CAQ1_HIBSY (Putative calcium-binding protein CML17 n=3 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3CAQ1_HIBSY)

HSP 1 Score: 55.1 bits (131), Expect = 3.860e-6
Identity = 25/63 (39.68%), Postives = 41/63 (65.08%), Query Frame = 1 
Query:  148 ELRFLFRLVDHNGSGTVERGELVELLKKMGTETDAGEIDTWLGSSDNDGDGVLSFEEFCQALT 336
            +LR LF+++D +G+G +   EL   + K+G    A E+   +  +D DGDG++SFEEF QA++
Sbjct:   94 QLRQLFKMLDRDGNGYITAAELAHSMAKLGHALTAEELTGMIKEADTDGDGMISFEEFSQAVS 156
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BLAST of mRNA_P-wetherbeei_contig615.2.1 vs. uniprot
Match: A0A0V1IE89_TRIPS (Polynucleotide adenylyltransferase n=1 Tax=Trichinella pseudospiralis TaxID=6337 RepID=A0A0V1IE89_TRIPS)

HSP 1 Score: 57.0 bits (136), Expect = 4.070e-6
Identity = 35/92 (38.04%), Postives = 50/92 (54.35%), Query Frame = 1 
Query:  103 RLPPSSKVNDDPLNL---ELRFLFRLVDHNGSGTVERGELVELLKKM-GTETDAGEIDT----WLGSSDNDGDGVLSFEEFCQALTITKGER 354
            R  P  K    PLN    +LRF F + D N  G + + EL+E+L  M G    A ++D      +  +D DGDG++SFEEFC+A+  T  E+
Sbjct:  569 RFRPIKKNKPHPLNRRRDKLRFAFSMYDLNHDGFITKNELLEILNMMVGAHISADQLDRIATRTITEADKDGDGMISFEEFCEAMEKTNIEQ 660
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BLAST of mRNA_P-wetherbeei_contig615.2.1 vs. uniprot
Match: A0A0V0XTA3_TRIPS (Polynucleotide adenylyltransferase n=4 Tax=Trichinella TaxID=6333 RepID=A0A0V0XTA3_TRIPS)

HSP 1 Score: 57.0 bits (136), Expect = 4.360e-6
Identity = 35/92 (38.04%), Postives = 50/92 (54.35%), Query Frame = 1 
Query:  103 RLPPSSKVNDDPLNL---ELRFLFRLVDHNGSGTVERGELVELLKKM-GTETDAGEIDT----WLGSSDNDGDGVLSFEEFCQALTITKGER 354
            R  P  K    PLN    +LRF F + D N  G + + EL+E+L  M G    A ++D      +  +D DGDG++SFEEFC+A+  T  E+
Sbjct:  894 RFRPIKKNKPHPLNRRRDKLRFAFSMYDLNHDGFITKNELLEILNMMVGAHISADQLDRIATRTITEADKDGDGMISFEEFCEAMEKTNIEQ 985
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BLAST of mRNA_P-wetherbeei_contig615.2.1 vs. uniprot
Match: A0A0V1J245_TRIPS (Polynucleotide adenylyltransferase n=23 Tax=Trichinella TaxID=6333 RepID=A0A0V1J245_TRIPS)

HSP 1 Score: 57.0 bits (136), Expect = 4.420e-6
Identity = 35/92 (38.04%), Postives = 50/92 (54.35%), Query Frame = 1 
Query:  103 RLPPSSKVNDDPLNL---ELRFLFRLVDHNGSGTVERGELVELLKKM-GTETDAGEIDT----WLGSSDNDGDGVLSFEEFCQALTITKGER 354
            R  P  K    PLN    +LRF F + D N  G + + EL+E+L  M G    A ++D      +  +D DGDG++SFEEFC+A+  T  E+
Sbjct: 1007 RFRPIKKNKPHPLNRRRDKLRFAFSMYDLNHDGFITKNELLEILNMMVGAHISADQLDRIATRTITEADKDGDGMISFEEFCEAMEKTNIEQ 1098
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BLAST of mRNA_P-wetherbeei_contig615.2.1 vs. uniprot
Match: A0A0V1F8K7_TRIPS (Polynucleotide adenylyltransferase n=2 Tax=Trichinella TaxID=6333 RepID=A0A0V1F8K7_TRIPS)

HSP 1 Score: 57.0 bits (136), Expect = 4.430e-6
Identity = 35/92 (38.04%), Postives = 50/92 (54.35%), Query Frame = 1 
Query:  103 RLPPSSKVNDDPLNL---ELRFLFRLVDHNGSGTVERGELVELLKKM-GTETDAGEIDT----WLGSSDNDGDGVLSFEEFCQALTITKGER 354
            R  P  K    PLN    +LRF F + D N  G + + EL+E+L  M G    A ++D      +  +D DGDG++SFEEFC+A+  T  E+
Sbjct: 1026 RFRPIKKNKPHPLNRRRDKLRFAFSMYDLNHDGFITKNELLEILNMMVGAHISADQLDRIATRTITEADKDGDGMISFEEFCEAMEKTNIEQ 1117
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BLAST of mRNA_P-wetherbeei_contig615.2.1 vs. uniprot
Match: A0A0V1EFS2_TRIPS (Polynucleotide adenylyltransferase (Fragment) n=9 Tax=Trichinella pseudospiralis TaxID=6337 RepID=A0A0V1EFS2_TRIPS)

HSP 1 Score: 57.0 bits (136), Expect = 4.450e-6
Identity = 35/92 (38.04%), Postives = 50/92 (54.35%), Query Frame = 1 
Query:  103 RLPPSSKVNDDPLNL---ELRFLFRLVDHNGSGTVERGELVELLKKM-GTETDAGEIDT----WLGSSDNDGDGVLSFEEFCQALTITKGER 354
            R  P  K    PLN    +LRF F + D N  G + + EL+E+L  M G    A ++D      +  +D DGDG++SFEEFC+A+  T  E+
Sbjct: 1028 RFRPIKKNKPHPLNRRRDKLRFAFSMYDLNHDGFITKNELLEILNMMVGAHISADQLDRIATRTITEADKDGDGMISFEEFCEAMEKTNIEQ 1119
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig615.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A835ZC16_9STRA1.900e-2134.12Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S0SMS1_9CHLO1.100e-1233.57Hypothetical protein n=1 Tax=Mantoniella antarctic... [more]
A0A5J4VYI4_9EUKA1.660e-934.48Putative calcium binding protein n=3 Tax=Strebloma... [more]
UPI0001EFB6221.640e-638.04calcium-binding protein p22 n=1 Tax=Trichinella sp... [more]
A0A6A3CAQ1_HIBSY3.860e-639.68Putative calcium-binding protein CML17 n=3 Tax=Hib... [more]
A0A0V1IE89_TRIPS4.070e-638.04Polynucleotide adenylyltransferase n=1 Tax=Trichin... [more]
A0A0V0XTA3_TRIPS4.360e-638.04Polynucleotide adenylyltransferase n=4 Tax=Trichin... [more]
A0A0V1J245_TRIPS4.420e-638.04Polynucleotide adenylyltransferase n=23 Tax=Trichi... [more]
A0A0V1F8K7_TRIPS4.430e-638.04Polynucleotide adenylyltransferase n=2 Tax=Trichin... [more]
A0A0V1EFS2_TRIPS4.450e-638.04Polynucleotide adenylyltransferase (Fragment) n=9 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig615contigP-wetherbeei_contig615:2327..3103 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LKJ0
PFAMsEF-hand_1,EF-hand_8
Model size593
Max annot lvl2759|Eukaryota
KEGG koko:K02183
KEGG Pathwayko04014,ko04015,ko04016,ko04020,ko04022,ko04024,ko04070,ko04114,ko04218,ko04261,ko04270,ko04371,ko04626,ko04713,ko04720,ko04722,ko04728,ko04740,ko04744,ko04745,ko04750,ko04910,ko04912,ko04915,ko04916,ko04921,ko04922,ko04924,ko04925,ko04970,ko04971,ko05010,ko05031,ko05034,ko05133,ko05152,ko05167,ko05200,ko05214,ko05418,map04014,map04015,map04016,map04020,map04022,map04024,map04070,map04114,map04218,map04261,map04270,map04371,map04626,map04713,map04720,map04722,map04728,map04740,map04744,map04745,map04750,map04910,map04912,map04915,map04916,map04921,map04922,map04924,map04925,map04970,map04971,map05010,map05031,map05034,map05133,map05152,map05167,map05200,map05214,map05418
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.19e-19
EggNOG OGsCOG5126@1|root,KOG0027@2759|Eukaryota
DescriptionCalcium-binding protein
Cds size591
COG categoryDTZ
BRITEko00000,ko00001,ko01009,ko03036,ko04131,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186892.5012522-CDS-P-wetherbeei_contig615:2326..24931683186892.5012522-CDS-P-wetherbeei_contig615:2326..2493Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig615 2327..2493 +
1683186892.5132792-CDS-P-wetherbeei_contig615:2679..31031683186892.5132792-CDS-P-wetherbeei_contig615:2679..3103Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig615 2680..3103 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig615.2.1prot_P-wetherbeei_contig615.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig615 2327..3103 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig615.2.1

>prot_P-wetherbeei_contig615.2.1 ID=prot_P-wetherbeei_contig615.2.1|Name=mRNA_P-wetherbeei_contig615.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=197bp
STKVTPLICRLLFCGQLSESTGMSRPASSTRNAKRLPPSSKVNDDPLNLE
LRFLFRLVDHNGSGTVERGELVELLKKMGTETDAGEIDTWLGSSDNDGDG
VLSFEEFCQALTITKGERGKYTKDQMTSACRAFEGTRPVGKLHRGVLFQA
LSEYGMQEGADFVTAEEAAALAAGMEADEKGMVDYVKIVDSLFIQA*
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mRNA from alignment at P-wetherbeei_contig615:2327..3103+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig615.2.1 ID=mRNA_P-wetherbeei_contig615.2.1|Name=mRNA_P-wetherbeei_contig615.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=777bp|location=Sequence derived from alignment at P-wetherbeei_contig615:2327..3103+ (Phaeothamnion wetherbeei SAG_119_79)
TCAACAAAGGTCACGCCTCTCATTTGCCGTCTGCTCTTCTGCGGCCAGCT
CTCTGAAAGCACCGGAATGTCCCGGCCCGCATCGTCTACCCGCAACGCGA
AGCGCTTACCCCCATCGAGCAAAGTGAATGACGATCCCTTGAATCTCGAA
CTAAGATTTCTCTTCCGGTAAGTCCACAAGGCCGGTTTATGAGACGCACA
CTGTGAATTTTTACAGTGCTAATCGCATTTAGTTGCCAGCGCAGCATCTG
TTAGAGACGATCATCTTGTAGAGTCGCCTTGGTGAAAATGACGAGTGGAC
ATTTTAACGCATATCCATCTATCCGCCGCTTCTATGTCTCGTTCATCATG
CAGATTAGTCGATCACAATGGCAGCGGGACGGTCGAGCGCGGAGAGCTGG
TAGAATTACTCAAGAAGATGGGAACGGAGACAGACGCCGGCGAGATTGAT
ACCTGGCTCGGCAGCAGCGACAATGACGGCGACGGCGTTCTCAGCTTTGA
GGAGTTCTGCCAAGCCCTGACAATCACGAAAGGGGAGCGCGGAAAGTACA
CCAAGGACCAGATGACCTCAGCGTGCCGCGCCTTCGAAGGCACCCGGCCC
GTGGGCAAGCTGCACCGGGGCGTCCTGTTCCAGGCGCTCTCCGAATACGG
GATGCAGGAAGGCGCCGACTTTGTGACCGCCGAGGAGGCGGCGGCACTGG
CAGCGGGCATGGAAGCGGACGAGAAGGGTATGGTCGACTACGTGAAAATT
GTCGATAGTCTGTTTATACAAGCATGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig615:2327..3103+

>mRNA_P-wetherbeei_contig615.2.1 ID=mRNA_P-wetherbeei_contig615.2.1|Name=mRNA_P-wetherbeei_contig615.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=591bp|location=Sequence derived from alignment at P-wetherbeei_contig615:2327..3103+ (Phaeothamnion wetherbeei SAG_119_79)
TCAACAAAGGTCACGCCTCTCATTTGCCGTCTGCTCTTCTGCGGCCAGCT
CTCTGAAAGCACCGGAATGTCCCGGCCCGCATCGTCTACCCGCAACGCGA
AGCGCTTACCCCCATCGAGCAAAGTGAATGACGATCCCTTGAATCTCGAA
CTAAGATTTCTCTTCCGATTAGTCGATCACAATGGCAGCGGGACGGTCGA
GCGCGGAGAGCTGGTAGAATTACTCAAGAAGATGGGAACGGAGACAGACG
CCGGCGAGATTGATACCTGGCTCGGCAGCAGCGACAATGACGGCGACGGC
GTTCTCAGCTTTGAGGAGTTCTGCCAAGCCCTGACAATCACGAAAGGGGA
GCGCGGAAAGTACACCAAGGACCAGATGACCTCAGCGTGCCGCGCCTTCG
AAGGCACCCGGCCCGTGGGCAAGCTGCACCGGGGCGTCCTGTTCCAGGCG
CTCTCCGAATACGGGATGCAGGAAGGCGCCGACTTTGTGACCGCCGAGGA
GGCGGCGGCACTGGCAGCGGGCATGGAAGCGGACGAGAAGGGTATGGTCG
ACTACGTGAAAATTGTCGATAGTCTGTTTATACAAGCATGA
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